mRNA_F-serratus_M_contig918.20571.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig918.20571.1
Unique NamemRNA_F-serratus_M_contig918.20571.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig918.20571.1 vs. uniprot
Match: D8LND4_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND4_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.450e-59
Identity = 104/182 (57.14%), Postives = 122/182 (67.03%), Query Frame = 3 
Query:    3 GMLGTPPRLPRPLADGMIVGAAKEAARWLAVDDRTWHQAKKFMDDCMADCPNERILNRRKMTPDQWQESKVAAIEAALRADSSLATSRHINRSAFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELCLLLKERMETESADTIVGINAPIDLAGMTPLAWS 548
            G+LGTPPRLPRPLADGMIV AA EAARWLA+DDRTWHQ KKFMD+C+ADCPNE+ L RRK+TPDQW+ESK+ +I+A++ AD SLATSRH+N+SAFP                                                 L+LCLLLK RME ESADTIVG+NAP+DL+G TPLAWS
Sbjct:  170 GVLGTPPRLPRPLADGMIVEAATEAARWLAIDDRTWHQGKKFMDECIADCPNEKNLIRRKLTPDQWRESKIKSIKASIAADPSLATSRHVNKSAFPMDGWTPLHAAAAKGNVEFVKVLLEVPGVSAWAVDLQGRTALALAAAEGHLDLCLLLKARMEMESADTIVGVNAPVDLSGRTPLAWS 351
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BLAST of mRNA_F-serratus_M_contig918.20571.1 vs. uniprot
Match: A0A6H5KI44_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI44_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.880e-57
Identity = 103/182 (56.59%), Postives = 120/182 (65.93%), Query Frame = 3 
Query:    3 GMLGTPPRLPRPLADGMIVGAAKEAARWLAVDDRTWHQAKKFMDDCMADCPNERILNRRKMTPDQWQESKVAAIEAALRADSSLATSRHINRSAFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELCLLLKERMETESADTIVGINAPIDLAGMTPLAWS 548
            G+L TPPRLPRP ADGMIV AA EAARWLAVDD TWHQ KKFMD+C+ADCPNE+ LNRRK+TP+QW+ESK+ +I+A++ AD SLATSRH+N+SAFP                                                 L+LCLLLK RME ESADTIVGINAP+DL+G TPLAWS
Sbjct:  390 GVLVTPPRLPRPQADGMIVEAATEAARWLAVDDHTWHQGKKFMDECIADCPNEKNLNRRKLTPEQWRESKIKSIKASIAADPSLATSRHVNKSAFPMDGWTPLHAAAAKGNVEFVKVLLEVPGVSAWAVDLQGRTALALAAAEGHLDLCLLLKARMEMESADTIVGINAPVDLSGRTPLAWS 571
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig918.20571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LND4_ECTSI1.450e-5957.14PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KI44_9PHAE1.880e-5756.59PPM-type phosphatase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig918contigF-serratus_M_contig918:5004..7985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.8e-51
Seed eggNOG ortholog2880.D8LND4
Preferred namePP2C
KEGG koko:K01090,ko:K04457,ko:K04461,ko:K17499,ko:K17506
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0631@1,KOG0697@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons5
Model size550
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig918.20571.1prot_F-serratus_M_contig918.20571.1Fucus serratus malepolypeptideF-serratus_M_contig918 5004..7980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.4333456-CDS-F-serratus_M_contig918:5003..50901622932659.4333456-CDS-F-serratus_M_contig918:5003..5090Fucus serratus maleCDSF-serratus_M_contig918 5004..5090 -
1690964408.8605344-CDS-F-serratus_M_contig918:5003..50901690964408.8605344-CDS-F-serratus_M_contig918:5003..5090Fucus serratus maleCDSF-serratus_M_contig918 5004..5090 -
1622932659.45435-CDS-F-serratus_M_contig918:5515..56261622932659.45435-CDS-F-serratus_M_contig918:5515..5626Fucus serratus maleCDSF-serratus_M_contig918 5516..5626 -
1690964408.8917394-CDS-F-serratus_M_contig918:5515..56261690964408.8917394-CDS-F-serratus_M_contig918:5515..5626Fucus serratus maleCDSF-serratus_M_contig918 5516..5626 -
1622932659.4728198-CDS-F-serratus_M_contig918:5979..61021622932659.4728198-CDS-F-serratus_M_contig918:5979..6102Fucus serratus maleCDSF-serratus_M_contig918 5980..6102 -
1690964408.9045732-CDS-F-serratus_M_contig918:5979..61021690964408.9045732-CDS-F-serratus_M_contig918:5979..6102Fucus serratus maleCDSF-serratus_M_contig918 5980..6102 -
1622932659.4915197-CDS-F-serratus_M_contig918:7241..73521622932659.4915197-CDS-F-serratus_M_contig918:7241..7352Fucus serratus maleCDSF-serratus_M_contig918 7242..7352 -
1690964408.9149098-CDS-F-serratus_M_contig918:7241..73521690964408.9149098-CDS-F-serratus_M_contig918:7241..7352Fucus serratus maleCDSF-serratus_M_contig918 7242..7352 -
1622932659.5145519-CDS-F-serratus_M_contig918:7869..79801622932659.5145519-CDS-F-serratus_M_contig918:7869..7980Fucus serratus maleCDSF-serratus_M_contig918 7870..7980 -
1690964408.9347522-CDS-F-serratus_M_contig918:7869..79801690964408.9347522-CDS-F-serratus_M_contig918:7869..7980Fucus serratus maleCDSF-serratus_M_contig918 7870..7980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.5319345-UTR-F-serratus_M_contig918:7980..79851622932659.5319345-UTR-F-serratus_M_contig918:7980..7985Fucus serratus maleUTRF-serratus_M_contig918 7981..7985 -
1690964408.945011-UTR-F-serratus_M_contig918:7980..79851690964408.945011-UTR-F-serratus_M_contig918:7980..7985Fucus serratus maleUTRF-serratus_M_contig918 7981..7985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig918.20571.1

>prot_F-serratus_M_contig918.20571.1 ID=prot_F-serratus_M_contig918.20571.1|Name=mRNA_F-serratus_M_contig918.20571.1|organism=Fucus serratus male|type=polypeptide|length=181bp
MLGTPPRLPRPLADGMIVGAAKEAARWLAVDDRTWHQAKKFMDDCMADCP
NERILNRRKMTPDQWQESKVAAIEAALRADSSLATSRHINRSAFPMDGWT
PLHAAAARGNLEFVKTLLKVPGVSVWSVDLQGRTALALAAEGGHLELCLL
LKERMETESADTIVGINAPIDLAGMTPLAWS
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mRNA from alignment at F-serratus_M_contig918:5004..7985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig918.20571.1 ID=mRNA_F-serratus_M_contig918.20571.1|Name=mRNA_F-serratus_M_contig918.20571.1|organism=Fucus serratus male|type=mRNA|length=2982bp|location=Sequence derived from alignment at F-serratus_M_contig918:5004..7985- (Fucus serratus male)
AGGGGATGCTGGGGACGCCTCCGAGGCTGCCAAGGCCTCTGGCAGACGGA
ATGATCGTGGGCGCCGCGAAGGAAGCGGCCAGGTGGCTGGCGGTGGATGA
TCGCACGTGGCATCAGGTACGAGGTGCAGCGCAGTTGTTTGCTCAGCCCA
ATCCATCCCAAGAACTTTGGCTCTTGTTGTATCTATCTGCCCTTGTACCG
TACTGTACCGTGCCGTCTACTGGTCTCAATTTGATGTGAAAATAACGGGG
GTATGCAAAAAACGCCTGCCGATGGCGGAGACGTGGGCGAGGCTCGTCCT
CCTGAGCGGCGTTTGCGATCTTCGCGTGAACGGAGAAGAATTGTGTTTCG
CGCCACCCCAGCTTTCCGCCGCCGCCGCCGCCTTTCTTGGCGCTGGCAGA
GGGACAGACAAGCCCAGCTGCAAGCTAGTGTCGCGACCGACCTGACGCGA
CCACACGATACCGTATCGTCGTTTTTTTTCATGGTATAATATAATAGAGG
GGAATGAAAACGACATTGCAATGGTATGGACCAGCCGTTGTCGATCCCTT
TTTGACCGTGTCCTGTCTGGGCTGATTATCCCCCCCCCCCCTCCCCGACA
CACACCCCTATTGTTGTATTGTTGCGTTCGCAGGCGAAAAAGTTCATGGA
CGATTGCATGGCGGATTGCCCGAACGAGAGGATCCTCAACCGGAGAAAAA
TGACGCCCGATCAGTGGCAGGAGTCCAAGGTCGCTGCAATCGAGGTGCGG
GTCGCGCCGGGATGGGGAATGGTGATTTCCGTTGAGGTCATCGTGTACCA
GGATGTTTTTGGCAGAGGGAAGGAAGCGAGGTACAGTGGCGCACTATTTT
TTTTAGGTGGCGTTATGAGTGCCTGCAGCCCTGCAGCAAGTGGGCGACAT
GGGGAGGGGGGGGCAGCAATTGTCAGGGAACGACGGTCTCGTTATATCTT
CACCTTAAGCGCTCTTTCACAACCCCCCCTCCGCCCCCCCCCCCCCCCCC
CGACATTGCGCTTCCGGCAGCCCGTCCTCCTGCCCTATGTATGGTCACAC
ATATAGCAAGAGTATGGATCAACCTGTTAAGGTTGCCAATCCTGCTCGTG
GTCAGCTAAACAGAAAAATAATATTCCCCTGTCCGCGTTCGCGCCTGGGA
ATTTGGTCTCGCGAGACGGTTTCCGCAGTCCCGTCCCGCGTCAGCCTGCT
CATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCG
AGTTCCGCGGCGGCGTCCATATAATAATATTAAACCGCCATACGCCATCG
GGTCAGTCCCGAGTAAATCGGGTCACGCAATTGCGTACCGATGGCGTTCA
CTGCCGAGAATCCGCCGGCACAGGGCCAGCATACCTCAAGGTAGTTTCGA
ACGAGTGCTGCCTTCGCAGGTCACTATGGACCAATTAATATACGCCTTTC
TTTCCCACACCCACTATTGGTTATGAAGTGGGCATGTTGAAAGCAACGGC
CCTATACAGTATATTAAAGTGACATTTATTAATGTATCTCTTCTATGTGG
TCTTGTTCACGCGAAGGAGAAGCGACGAACGTACCTTCGAAACGAGCAGC
TACCATGCTATTATTTCGCACCACCGTTGCGAAAGTATGTCTGTCCCCTT
TTGTCGCGTCTGATGAGAGGTTTTCTTTGCAAGTATCATTGATCCCTTAA
TACCCTATCCTTGGGAGGACCAATGCGAGTGGCATAGAATGACTATTAAT
AGGATGACAGGGCTAGATTGCGCGGTTATGTGCAATTTATTAAAGGCACA
TACATACACACGCAACTGCCCCTCCCCCCACACACACATATTTCTGTCCT
CATTTCGGGGTGCGCACTTTTGTTTTAAAACAGGCCGCTCTCAGGGCAGA
TTCGTCCCTGGCGACCAGCCGGCACATCAACAGATCCGCGTTTCCAATGG
ACGGTTGGACCCCTCTGCACGCGGCCGCGGCCAGGGGAAACCTCGAGTTT
GTAAAGGTAACTTGTTTTTCGCTCGTGCCGGCGGCGTTGTCGTCAAGGAA
TCAAGGGCGGTAATCGCAATCCACGGGGTCAGTCAGGTCTTTGGTGGACT
CCTTCGATGGACTAATTGGAACAAGGTTCATTTTCCGATAAAATACAAGA
TTGTGGAAATACTGGCTTTTCTTAAGAGTTAAGAGATGGTGCAAATGCTG
GAATGGCCCGCTCTAATCGATCTGATTTCATGATGGAAATGCTACAACGT
ATTTTCCGACAATTTGCGGCGCCACGCGTGCCTATCCGCTCGTCCCTCCC
CCCCCCACCATCTCCTCTCCTTGCACCGTTTTTGACCCCGCTTGCGGACG
ACCTGGCAGACTCTGTTAAAGGTACCCGGAGTGAGCGTGTGGTCGGTGGA
CCTGCAAGGAAGAACGGCGTTGGCTCTCGCCGCGGAAGGTGGACATCTAG
AGCTGTGCCTGCTCCTTAAGGTGCGCTGTTGTAGGTATTGACCACGTAGA
CTATAATCTCATTACACGAAACGTGTCACATATGCGTGCCGTCATGTCCA
TGCCTTACACCTTTGCCGCACCGCTTTCATTACCTTACCTTTGAAAAACA
AAGCGCGCCTCTCGGGGGGAAAACAAACAAAAAAACTAAACCCAGAATGT
GGAGTGCAAGGCGCAGTCGTCGAGGAGAACGCCTTGGTGGTGTGATCATA
CCCCGCTTTCCTCCGCGCGCCCTTTCGTTTTGGCACGTTACTTTTTTGAT
CGGCTCTCGGGCGATCGTTTCCCTATTAATAGCCTGTCGAGTTTTGTGGT
TTTGTTGATGCGTGCGCGGCGTTACGCGTCAGACTTGAACCCGCGCCGAC
GCCCAACGCTGAGGCCGCAACGCCCACCCGTGAAACCCTTACCAGGAGCG
CATGGAGACGGAGTCGGCCGACACGATCGTGGGGATCAACGCCCCCATCG
ACTTGGCGGGAATGACTCCATTGGCCTGGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig918:5004..7985-

>mRNA_F-serratus_M_contig918.20571.1 ID=mRNA_F-serratus_M_contig918.20571.1|Name=mRNA_F-serratus_M_contig918.20571.1|organism=Fucus serratus male|type=CDS|length=1086bp|location=Sequence derived from alignment at F-serratus_M_contig918:5004..7985- (Fucus serratus male)
ATGCTGGGGACGCCTCCGAGGCTGCCAAGGCCTCTGGCAGACGGAATGAT
CGTGGGCGCCGCGAAGGAAGCGGCCAGGTGGCTGGCGGTGGATGATCGCA
CGTGGCATCAGATGCTGGGGACGCCTCCGAGGCTGCCAAGGCCTCTGGCA
GACGGAATGATCGTGGGCGCCGCGAAGGAAGCGGCCAGGTGGCTGGCGGT
GGATGATCGCACGTGGCATCAGGCGAAAAAGTTCATGGACGATTGCATGG
CGGATTGCCCGAACGAGAGGATCCTCAACCGGAGAAAAATGACGCCCGAT
CAGTGGCAGGAGTCCAAGGTCGCTGCAATCGAGGCGAAAAAGTTCATGGA
CGATTGCATGGCGGATTGCCCGAACGAGAGGATCCTCAACCGGAGAAAAA
TGACGCCCGATCAGTGGCAGGAGTCCAAGGTCGCTGCAATCGAGGCCGCT
CTCAGGGCAGATTCGTCCCTGGCGACCAGCCGGCACATCAACAGATCCGC
GTTTCCAATGGACGGTTGGACCCCTCTGCACGCGGCCGCGGCCAGGGGAA
ACCTCGAGTTTGTAAAGGCCGCTCTCAGGGCAGATTCGTCCCTGGCGACC
AGCCGGCACATCAACAGATCCGCGTTTCCAATGGACGGTTGGACCCCTCT
GCACGCGGCCGCGGCCAGGGGAAACCTCGAGTTTGTAAAGACTCTGTTAA
AGGTACCCGGAGTGAGCGTGTGGTCGGTGGACCTGCAAGGAAGAACGGCG
TTGGCTCTCGCCGCGGAAGGTGGACATCTAGAGCTGTGCCTGCTCCTTAA
GACTCTGTTAAAGGTACCCGGAGTGAGCGTGTGGTCGGTGGACCTGCAAG
GAAGAACGGCGTTGGCTCTCGCCGCGGAAGGTGGACATCTAGAGCTGTGC
CTGCTCCTTAAGGAGCGCATGGAGACGGAGTCGGCCGACACGATCGTGGG
GATCAACGCCCCCATCGACTTGGCGGGAATGACTCCATTGGCCTGGAGCG
AGCGCATGGAGACGGAGTCGGCCGACACGATCGTGGGGATCAACGCCCCC
ATCGACTTGGCGGGAATGACTCCATTGGCCTGGAGC
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