mRNA_F-serratus_M_contig917.20570.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig917.20570.1
Unique NamemRNA_F-serratus_M_contig917.20570.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig917.20570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig917contigF-serratus_M_contig917:336832..337405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog160860.XP_007341190.1
Hectar predicted targeting categoryother localisation
EggNOG OGs227J7@155619,2EDYD@1,2SJG5@2759,3AGS2@33154,3H6U8@355688,3PCCT@4751,3V3YR@5204
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.2018657-CDS-F-serratus_M_contig917:336831..3369881622932659.2018657-CDS-F-serratus_M_contig917:336831..336988Fucus serratus maleCDSF-serratus_M_contig917 336832..336988 -
1690964408.745127-CDS-F-serratus_M_contig917:336831..3369881690964408.745127-CDS-F-serratus_M_contig917:336831..336988Fucus serratus maleCDSF-serratus_M_contig917 336832..336988 -
1622932659.2244697-CDS-F-serratus_M_contig917:337160..3374051622932659.2244697-CDS-F-serratus_M_contig917:337160..337405Fucus serratus maleCDSF-serratus_M_contig917 337161..337405 -
1690964408.7580788-CDS-F-serratus_M_contig917:337160..3374051690964408.7580788-CDS-F-serratus_M_contig917:337160..337405Fucus serratus maleCDSF-serratus_M_contig917 337161..337405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig917.20570.1prot_F-serratus_M_contig917.20570.1Fucus serratus malepolypeptideF-serratus_M_contig917 336832..337405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig917.20570.1

>prot_F-serratus_M_contig917.20570.1 ID=prot_F-serratus_M_contig917.20570.1|Name=mRNA_F-serratus_M_contig917.20570.1|organism=Fucus serratus male|type=polypeptide|length=134bp
MRSRRSSYGHLVASYTCGVVCGVQPLWETEGQREVARCLDVIWPDSTRRP
AIIFFDLACKRRAHLRTHPDPNWAGTLNVVDRFHFIGHNDSECNEYCSPA
NVSNPALWAAEPGGGVRLIWNSSISESNNSFLHG
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mRNA from alignment at F-serratus_M_contig917:336832..337405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig917.20570.1 ID=mRNA_F-serratus_M_contig917.20570.1|Name=mRNA_F-serratus_M_contig917.20570.1|organism=Fucus serratus male|type=mRNA|length=574bp|location=Sequence derived from alignment at F-serratus_M_contig917:336832..337405- (Fucus serratus male)
ATGCGGTCCCGGCGATCATCGTATGGCCACCTCGTGGCAAGCTATACTTG
TGGTGTCGTCTGTGGCGTACAACCTTTGTGGGAGACGGAGGGGCAGCGCG
AAGTTGCCCGGTGTCTTGACGTGATATGGCCAGACTCTACGCGCCGCCCT
GCAATTATTTTCTTCGACTTAGCGTGTAAACGTCGAGCCCATCTCCGCAC
ACACCCGGATCCCAACTGGGCTGGTACACTTAACGTGGTCGACAGGTAAA
GTTAGGTCTATAACAAAATGAAAATAATCCACGCCACCCCCACCCCCTCT
CCCCGCCGTTATGTGCAGGACTGTTAGAGGACAGGCTTGAAAACTCATGT
CGATCTCGTTGACCCTTCGTGTACGACTTGAACACTGTCGTGTTTCTCAA
TATTCTTTCGTTAACAGGTTTCATTTCATTGGTCACAACGACAGCGAGTG
CAACGAGTACTGTTCTCCAGCGAATGTTTCCAACCCAGCTTTATGGGCGG
CAGAACCGGGCGGAGGTGTGCGACTCATCTGGAACTCCAGCATCAGCGAG
AGTAACAATTCATTCCTACATGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig917:336832..337405-

>mRNA_F-serratus_M_contig917.20570.1 ID=mRNA_F-serratus_M_contig917.20570.1|Name=mRNA_F-serratus_M_contig917.20570.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig917:336832..337405- (Fucus serratus male)
ATGCGGTCCCGGCGATCATCGTATGGCCACCTCGTGGCAAGCTATACTTG
TGGTGTCGTCTGTGGCGTACAACCTTTGTGGGAGACGGAGGGGCAGCGCG
AAGTTGCCCGGTGTCTTGACGTGATATGGCCAGACTCTACGCGCCGCCCT
GCAATTATTTTCTTCGACTTAGCGTGTAAACGTCGAGCCCATCTCCGCAC
ACACCCGGATCCCAACTGGGCTGGTACACTTAACGTGGTCGACAGATGCG
GTCCCGGCGATCATCGTATGGCCACCTCGTGGCAAGCTATACTTGTGGTG
TCGTCTGTGGCGTACAACCTTTGTGGGAGACGGAGGGGCAGCGCGAAGTT
GCCCGGTGTCTTGACGTGATATGGCCAGACTCTACGCGCCGCCCTGCAAT
TATTTTCTTCGACTTAGCGTGTAAACGTCGAGCCCATCTCCGCACACACC
CGGATCCCAACTGGGCTGGTACACTTAACGTGGTCGACAGGTTTCATTTC
ATTGGTCACAACGACAGCGAGTGCAACGAGTACTGTTCTCCAGCGAATGT
TTCCAACCCAGCTTTATGGGCGGCAGAACCGGGCGGAGGTGTGCGACTCA
TCTGGAACTCCAGCATCAGCGAGAGTAACAATTCATTCCTACATGGAGTT
TCATTTCATTGGTCACAACGACAGCGAGTGCAACGAGTACTGTTCTCCAG
CGAATGTTTCCAACCCAGCTTTATGGGCGGCAGAACCGGGCGGAGGTGTG
CGACTCATCTGGAACTCCAGCATCAGCGAGAGTAACAATTCATTCCTACA
TGGA
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