mRNA_F-serratus_M_contig915.20559.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig915.20559.1
Unique NamemRNA_F-serratus_M_contig915.20559.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig915.20559.1 vs. uniprot
Match: A0A6P8U4Y6_GYMAC (LOW QUALITY PROTEIN: uncharacterized protein LOC117545945 n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8U4Y6_GYMAC)

HSP 1 Score: 54.3 bits (129), Expect = 4.640e-6
Identity = 29/98 (29.59%), Postives = 46/98 (46.94%), Query Frame = 1 
Query:   10 YPEVLLRTDCECIEATVMKRILHYAGRVARMHDDRFPNIVMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDRKCWMRAAQDAPEWYRKVETGAEIF 303
            + EVL +T C  IEAT+ +  L + G V RM  +R P  V+ G++  G+R  G   KR + ++        I  +    AA D   W +    G ++ 
Sbjct:  876 HSEVLSKTSCRSIEATITQHQLRWLGHVVRMPSNRLPRRVLYGQLHHGRRSAGGQKKRYKDQLKTALKKCKIRPEALEDAAADRNTWRQLCRDGTQML 973
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig915.20559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P8U4Y6_GYMAC4.640e-629.59LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig915contigF-serratus_M_contig915:177335..177691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue2e-08
Seed eggNOG ortholog7739.XP_002599408.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932657.5696285-CDS-F-serratus_M_contig915:177334..1776911622932657.5696285-CDS-F-serratus_M_contig915:177334..177691Fucus serratus maleCDSF-serratus_M_contig915 177335..177691 +
1690964407.7252138-CDS-F-serratus_M_contig915:177334..1776911690964407.7252138-CDS-F-serratus_M_contig915:177334..177691Fucus serratus maleCDSF-serratus_M_contig915 177335..177691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig915.20559.1prot_F-serratus_M_contig915.20559.1Fucus serratus malepolypeptideF-serratus_M_contig915 177335..177691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig915.20559.1

>prot_F-serratus_M_contig915.20559.1 ID=prot_F-serratus_M_contig915.20559.1|Name=mRNA_F-serratus_M_contig915.20559.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MLSYPEVLLRTDCECIEATVMKRILHYAGRVARMHDDRFPNIVMRGEMVG
GKRKRGQPAKRLEHRVTEYCTAFGIDRKCWMRAAQDAPEWYRKVETGAEI
FMSAWSTKRVNETNARHAR
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mRNA from alignment at F-serratus_M_contig915:177335..177691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig915.20559.1 ID=mRNA_F-serratus_M_contig915.20559.1|Name=mRNA_F-serratus_M_contig915.20559.1|organism=Fucus serratus male|type=mRNA|length=357bp|location=Sequence derived from alignment at F-serratus_M_contig915:177335..177691+ (Fucus serratus male)
ATGCTCTCATACCCCGAGGTCCTCCTCAGGACTGACTGTGAGTGCATTGA
GGCTACTGTGATGAAGCGTATCCTCCATTACGCCGGCCGCGTCGCGCGCA
TGCACGACGATCGCTTCCCCAACATCGTCATGCGTGGCGAAATGGTCGGG
GGAAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATCGTGTCAC
GGAATACTGCACTGCCTTCGGAATCGACCGCAAGTGTTGGATGAGGGCCG
CCCAAGATGCACCTGAGTGGTACCGCAAAGTAGAGACGGGGGCTGAAATC
TTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCAACGCCCGCCA
CGCAAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig915:177335..177691+

>mRNA_F-serratus_M_contig915.20559.1 ID=mRNA_F-serratus_M_contig915.20559.1|Name=mRNA_F-serratus_M_contig915.20559.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig915:177335..177691+ (Fucus serratus male)
ATGCTCTCATACCCCGAGGTCCTCCTCAGGACTGACTGTGAGTGCATTGA
GGCTACTGTGATGAAGCGTATCCTCCATTACGCCGGCCGCGTCGCGCGCA
TGCACGACGATCGCTTCCCCAACATCGTCATGCGTGGCGAAATGGTCGGG
GGAAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATCGTGTCAC
GGAATACTGCACTGCCTTCGGAATCGACCGCAAGTGTTGGATGAGGGCCG
CCCAAGATGCACCTGAGTGGTACCGCAAAGTAGAGACGGGGGCTGAAATC
TTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCAACGCCCGCCA
CGCAAGGATGCTCTCATACCCCGAGGTCCTCCTCAGGACTGACTGTGAGT
GCATTGAGGCTACTGTGATGAAGCGTATCCTCCATTACGCCGGCCGCGTC
GCGCGCATGCACGACGATCGCTTCCCCAACATCGTCATGCGTGGCGAAAT
GGTCGGGGGAAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATC
GTGTCACGGAATACTGCACTGCCTTCGGAATCGACCGCAAGTGTTGGATG
AGGGCCGCCCAAGATGCACCTGAGTGGTACCGCAAAGTAGAGACGGGGGC
TGAAATCTTCATGTCGGCCTGGTCCACCAAGCGTGTGAACGAGACCAACG
CCCGCCACGCAAGG
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