mRNA_F-serratus_M_contig915.20562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig915.20562.1
Unique NamemRNA_F-serratus_M_contig915.20562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig915.20562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig915contigF-serratus_M_contig915:224884..228072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size326
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig915.20562.1prot_F-serratus_M_contig915.20562.1Fucus serratus malepolypeptideF-serratus_M_contig915 224884..227913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932656.2250264-CDS-F-serratus_M_contig915:224883..2249581622932656.2250264-CDS-F-serratus_M_contig915:224883..224958Fucus serratus maleCDSF-serratus_M_contig915 224884..224958 -
1690964406.9593031-CDS-F-serratus_M_contig915:224883..2249581690964406.9593031-CDS-F-serratus_M_contig915:224883..224958Fucus serratus maleCDSF-serratus_M_contig915 224884..224958 -
1622932656.2409348-CDS-F-serratus_M_contig915:227823..2279131622932656.2409348-CDS-F-serratus_M_contig915:227823..227913Fucus serratus maleCDSF-serratus_M_contig915 227824..227913 -
1690964406.9711802-CDS-F-serratus_M_contig915:227823..2279131690964406.9711802-CDS-F-serratus_M_contig915:227823..227913Fucus serratus maleCDSF-serratus_M_contig915 227824..227913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932656.255264-UTR-F-serratus_M_contig915:227913..2280721622932656.255264-UTR-F-serratus_M_contig915:227913..228072Fucus serratus maleUTRF-serratus_M_contig915 227914..228072 -
1690964406.989486-UTR-F-serratus_M_contig915:227913..2280721690964406.989486-UTR-F-serratus_M_contig915:227913..228072Fucus serratus maleUTRF-serratus_M_contig915 227914..228072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig915.20562.1

>prot_F-serratus_M_contig915.20562.1 ID=prot_F-serratus_M_contig915.20562.1|Name=mRNA_F-serratus_M_contig915.20562.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MHLLALRGLVVLYASCVCDRVCSFVDPSPKGISPRAVHWGTSATKTTFSL
GLKQI
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mRNA from alignment at F-serratus_M_contig915:224884..228072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig915.20562.1 ID=mRNA_F-serratus_M_contig915.20562.1|Name=mRNA_F-serratus_M_contig915.20562.1|organism=Fucus serratus male|type=mRNA|length=3189bp|location=Sequence derived from alignment at F-serratus_M_contig915:224884..228072- (Fucus serratus male)
TGTCCATTATTGTCTGCGCTCAACTGCCTGTAGACCGCAGGCGTTAGCGG
CGTTAGCACTCGACGACAATATTTCTGAGAGTTTCTAAGCCACGACTCTA
TACCTGGCAATTGGTGAGCTAAAGAGACCTCAAAAATCCACAGGGCCTTT
GAATTCAGAATGCATCTTCTTGCTCTACGGGGTCTGGTTGTCCTCTACGC
CTCATGTGTATGCGACAGGGTCTGTAGCTTCGTCGATCCCTCTCCGAAGG
TGAGTGGCGTCTTGTGAGCGATGCAGCAGTAGTCCGCCATACGTCCACAA
TTTTTTCCGATTTTGTAACGGCTTCCCGAGTTCGACTCGAGGAGCACGGC
GAAGTTGAAGCATGACCCGAGGGTCGTCCTGTTTGCAGCATCATCCCATC
ATGAATGACGGGGTGTCTGATTTCCAATGAGAGCGAGTCTTACTTATTTA
CAAGTGTTCGCCAACGCGATGCGTACCCACCAGCCTAAAACACTTGCACG
GAACACGTCGAACCGAACGTATTCGAGCATGACAATATCAGCGTGATTTT
TGCACGGGAAAACGTCTAGCGAGCGCTTTCATGAACCTGTTCTTATTTTT
CAGTCAAGAGTTTGGAGGTTGACATTTCCCCCACAACTCAGAACACAATG
CCCACGACGCGAGCAAGCGCACAACGCCAAGAGAAATGCGCTTCAGGCGT
ACAATCCGAGAGCATCGAACCAGCAAAGGGCGCGCACGCTATGCGCGGGC
GGGGATCCGATACCTGGGACGCATGACACATATTTTGTAATGGTATAGGG
GTGGGAGCCGAATGATTTTGTGGAGGAGACGGAGGACCTTGGTCATGAGG
ATTACCCCGTGATAGTTGTCAAATGGGTAGTGACCTTACGAGAGTGGCGT
CAACGGTAGGACGGGGTTCTAATCCCGCTGGGCTATTATTCCTCATCGGT
TGGAGGTGATAATGGTGCAGAATGCTATAATGCCCCTACTGGTATAAGTT
TGAACCCGAGACCCTAATTTGATTTACATGCACTCGAACCCTTATCGAAC
CAGCCTAGTCCGCTTAGGCACCGGATAGTATTATAGGACTAATGTTTGCT
CGTCGCCCGAGTGGTCCAGTCTATTAATAGTAGGTAACCAGCACACCTGC
CAGTAAGGAAGTCTTGAGTTCGATTCTTGTCAAAGCATGGTTTGCATTAT
TTCTTCCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAAGTAAACCAT
TGGTTGACGAAAGTTAAGATTGTTGAACTTGCATCGCGATAAAAATCCGT
AAGGTGTGAACCGGGGAGAGATGGGAAGATCCTTAGTGACCACAGGCAGC
ATGGTAATGATGAGGTCCATCGGCTACAAGTCAAATGGAAAAGAAAAAGA
AAAAAAGGCATCACCCCCTGGTGGTATTTGTCAATTTACCTCAACCCTGT
GGTCTGATTGTAAGCTAGGTCCCCACTCTATTACTATTATATACGGTAGC
ACCTTTCGTTGCTCGAAAAGTGGATGCTTCGCACACCTCTCTCTGGTATA
CAGAGGAAGGAACCATGGCTGAGGTCCCAGAAGATAGTAACGGCGGCCGA
CTGATGCCGCTTTATAGAGTTGCTGCGATTATTCACGTTTCTGTCGTCGC
AGTTCTTTGAAGCATAATACTGTATAATAGTGACTATGAGTAGGTCAGCC
GCAGAACACCGACTGCGCGCTCTTGTTACAAGTACACCACCATTTAACCC
GTTTTTCTCGCTGTTTACTCAAGCTGTAAATCATGGCTTCCCGCTTACTC
GTTGATGGCATTATAGCTCGCTTATATCTTGTGGCCTTATACTTCTTCCT
CGAAGCCGCAGCTGCTGCTCTTTGAGTGGCACTTACTGTATAGCAGGAAG
GCGGTAGCAGCACGTTCCCTACAACTATTACTACTATATTAATATTTGCA
CTATTATTAGAAAACATTTGAGCCAGAAAGTTGCAGAAGGTTGCAATCGT
CCTGAGGTCGAAATGACCATTACCGCGAGGAAGAAAGAAGATACTACAGC
TGTAGGATTGCCGCCTCTTAGAGCTATCCCTAGCGGAACATCTTCAACCT
ATGTTCTTGTGCTTTACGGGCATTAATTGGTCTACGGAGTTACCGGAATA
GGTCGCAAACGTTTCCGGAGCGACCTAGAGGAATAATGGCCCTATGTCGG
CGGAGTCTCGGCGGTGAACGTCATCGGTGCAATTCCGCGACCTGACAAAC
TCGGCCCGATGGCGGTTGACGATGAAGATGAACACCTTCACAGAACGTAG
GAGGAATCCCGCGAGAAAGCCCTAGATCCAGCCTGTATGCGGAGAATGAG
CAGGCTGATGCGGGACGGGACGGCCTAACCTGTCTCGCGAGATCAAATTT
TCAGGCGCGGACGGGGACAGGGAAACGTAATTTTCCCTGTCAAGCTGACC
ACAAGGAGGATTGGTATCAAACCTCAACGGTTGCTGCCTAATCTGCTGAA
CGCGATGACCAACAACTCTTCACCTTACAGCCTTTGTTCCCACTTAAACG
TTTCGACAATCGACAGTTTCGCCATTGATTGGATGCATCCTCAGAAGATT
TAGAGAGTTGATAGAGAGATAGATGTATTAATAGATGCCTTCAGATTTTT
CTTTGAACAGCAACCTCCCTGAAGACAGTTCTGTGGGTCTTGAAACGTAT
TTATTTGATCGCGTTATACCCACTGCAAATGAAGAATACCCAGATATAGT
CTACTCAGACCCGGGTTTTTACTGCGTAAGTAGCACATTGAAAAATGCGC
GAATCCTTTCCCAGTCCTATTGTAATCCCCATCATCGATCATCCATCATC
GATCATCCATATCATCCATCATCGATCATCACTCGTATGGGTATGGGCAC
CTTACCTTCTTTTCCAGCTACAGTATTGAACCACATGAACCACACAGGGT
AGTCAGTCTGAATGCGGTGTACGAACTAGGCAGCGTTTCAAGTGGGGGAG
GGCCCTGATTGTGTACTACGTAAAAAATATGTAATGAAAGGGTGCGATAT
TGTCTCGGACACCTGGGTGGCCGCGTGGCAAATCTCGCTTCCCCATATCG
AAAACCTCTCGCAGGGCATCTCTCCACGGGCTGTTCATTGGGGCACCAGT
GCCACCAAGACGACTTTCAGCCTAGGACTAAAACAAATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig915:224884..228072-

>mRNA_F-serratus_M_contig915.20562.1 ID=mRNA_F-serratus_M_contig915.20562.1|Name=mRNA_F-serratus_M_contig915.20562.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig915:224884..228072- (Fucus serratus male)
ATGCATCTTCTTGCTCTACGGGGTCTGGTTGTCCTCTACGCCTCATGTGT
ATGCGACAGGGTCTGTAGCTTCGTCGATCCCTCTCCGAAGATGCATCTTC
TTGCTCTACGGGGTCTGGTTGTCCTCTACGCCTCATGTGTATGCGACAGG
GTCTGTAGCTTCGTCGATCCCTCTCCGAAGGGCATCTCTCCACGGGCTGT
TCATTGGGGCACCAGTGCCACCAAGACGACTTTCAGCCTAGGACTAAAAC
AAATAGGCATCTCTCCACGGGCTGTTCATTGGGGCACCAGTGCCACCAAG
ACGACTTTCAGCCTAGGACTAAAACAAATA
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