mRNA_F-serratus_M_contig913.20549.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig913.20549.1
Unique NamemRNA_F-serratus_M_contig913.20549.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig913.20549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig913contigF-serratus_M_contig913:6611..8708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932655.3751996-CDS-F-serratus_M_contig913:6610..66911622932655.3751996-CDS-F-serratus_M_contig913:6610..6691Fucus serratus maleCDSF-serratus_M_contig913 6611..6691 +
1690964406.6255589-CDS-F-serratus_M_contig913:6610..66911690964406.6255589-CDS-F-serratus_M_contig913:6610..6691Fucus serratus maleCDSF-serratus_M_contig913 6611..6691 +
1622932655.4168477-CDS-F-serratus_M_contig913:8630..87081622932655.4168477-CDS-F-serratus_M_contig913:8630..8708Fucus serratus maleCDSF-serratus_M_contig913 8631..8708 +
1690964406.6461024-CDS-F-serratus_M_contig913:8630..87081690964406.6461024-CDS-F-serratus_M_contig913:8630..8708Fucus serratus maleCDSF-serratus_M_contig913 8631..8708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig913.20549.1prot_F-serratus_M_contig913.20549.1Fucus serratus malepolypeptideF-serratus_M_contig913 6611..8708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig913.20549.1

>prot_F-serratus_M_contig913.20549.1 ID=prot_F-serratus_M_contig913.20549.1|Name=mRNA_F-serratus_M_contig913.20549.1|organism=Fucus serratus male|type=polypeptide|length=53bp
MNPYESSCESPDLLPPSKRRRAPSFVKGVSIRPQSSQARGEAQKMMVMAS
VAV
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mRNA from alignment at F-serratus_M_contig913:6611..8708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig913.20549.1 ID=mRNA_F-serratus_M_contig913.20549.1|Name=mRNA_F-serratus_M_contig913.20549.1|organism=Fucus serratus male|type=mRNA|length=2098bp|location=Sequence derived from alignment at F-serratus_M_contig913:6611..8708+ (Fucus serratus male)
ATGAACCCCTACGAGTCATCGTGCGAGTCGCCGGATTTGCTTCCTCCGTC
AAAAAGGCGGAGAGCCCCTTCCTTCGTGAAGGTTAGTATACTAGTACTGA
AAATGCATTGTTAACACTACGAACAAGTCACAAAAAAGGCCCTCGGTCAT
TATCTTAGCATACGCCCTAGGACGTATGACTGTTTTACTGTTAGATAGAC
TATACTCCCCATGATCCACAAAGCAATGTGTTATTTCTCCTGTGTCGCCG
TTGAAAGTGAAATAGATTTGCCGACCCTCTTCCGTCCCACCCTAACGCTT
CCCCGCACCGTTGCGTAATCTGGACCTTACTCTCACGGCGTTCCTACTAC
GTACGTATAAAGTAAAGTCTGAACGTATTTAAACCTTCTTAAGACTGTGG
TAAACGAAAAATTTCCTTCGCCCTATGTCCTTGAAAAGTGAAGCCAACCA
AATTGTGATACGCGGGACCTAGGCCCTTAGTTTTAACGAGGCCCCGCGCG
TTTTTTTCAAAAACATATGTTGCAATGACAGACCATGGAGAGATATTTGT
CCCTGCAGCCACGTTCCCACCTACCGCTGGTAAAACGTTTGACTGATCAG
AAGGTTTGGATGCGTTCAGATTTTCTTTGAACAGTAGTACTGAATCGGAT
GCACATGGTGCTGTAATTGTTTTGACTATCAATACAACATTTCAGCCTAT
ACCCTCGTACGTATAAGTATATTCTAGATACATTGGTTCGTTGAGAGTAC
TAGTGATACCGATATAATAAAAGCAACAGCTGCTGCCTACTTGAAACAGT
ATAGGTGATGCCTTGTGTTTCGAGTACTAACTGTAGTAGTACTATAACTT
TCTCGAAGATATTACGTACAGCTTCGTCGCATGAGGCTTAAAACCTCATG
AACATGCCGGCACCATATCATTGTTTTGGAAACGTTTACCTAGCACGTGC
TGTCGTCTTTCATGCAGTCCGCGTCCAATCACCAGCCCTGGTGCAAGAAA
AAAAGCACCAGCCAGAGAAACGCCTCCAGATCCACACCTAACCCTAACCC
AGACCCCTACCCTAGTTGACTGCGAGGTCCCAATTCATGGCTGGGTCCAT
TCATGCCCCGTCTGCGAAAAATAATAAACAAAACTAAGCAACCTTGTATT
TTATAAGTTTTAAATTATAAAATAAGGTGCAGATCTGGAGGCGTTTCTCT
GGCCCTGGCGCATTTTTTTCTTGCACCAGGGCTGGTGATTGGAGTACTCT
TTATTTCATCAATTTACTCGTTTTTTTCCCATCGCGTTAAAAAAATACTC
AATGTATCCCAAACTCGTACTCTATAACTTTAATGCAGTATCCTCCCTAT
CTTGAATCCCTTGTCGTTTCCAACGCGCCCAGCGGAGTGGAGCGGCTCCT
AGGAGGTCACCGCGCAAGCACCCGGGTTCACCAACGACCCCTGACTCCAA
GGCTCGTAATCGACGGGATGAAACAACTCCATTCAGTCGACGAGCGTCAG
GCTCCATTGGCCACATGTACGAGGCCGCGACTCCCTCGACGTCGCCGGGG
AACGTCGACCCGACAGATAGCCGTTCATCGACTCCTTGGAGTCCAGTAGA
GGGATCTGACGAGGTTTCACGTACAGCGGTGTTGGCCCCGGAGACCCCGG
ATGACTCCGACCAATGCGCGATTTTGAACAAACTTAAGCCCGGAAAGGGA
CCCTCGCCGGCGTGCCCCTGCTGGGTTACATCCGGTATAATATAGACCTC
TCCGACGACCAGTGCCTCTCCTCGTGGGGCCAATCGTACGTCTGTCGAAG
GATCCCATTGGGGTGCTGCAGAATACACCCGCCGAGGTAAGCCATACCCG
CCGTACCTTGTTCGTTAAAAGCACTGCTTACGTTGCTGTTGAGTCCAAAC
GCCGCTTTCCATAGCATGTTCCCCTCCCTCATCTGTCGCTTTCCATAATC
TGTTTTCTCTCCGCTCTTCTTTTCACCGCTCCCACCTGCACCCCAAACCC
ACTTTGCGTGAAAACAATAGGGAGTTAGCATTCGGCCGCAGAGCAGTCAG
GCGAGAGGGGAGGCGCAAAAAATGATGGTGATGGCGTCGGTAGCTGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig913:6611..8708+

>mRNA_F-serratus_M_contig913.20549.1 ID=mRNA_F-serratus_M_contig913.20549.1|Name=mRNA_F-serratus_M_contig913.20549.1|organism=Fucus serratus male|type=CDS|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig913:6611..8708+ (Fucus serratus male)
ATGAACCCCTACGAGTCATCGTGCGAGTCGCCGGATTTGCTTCCTCCGTC
AAAAAGGCGGAGAGCCCCTTCCTTCGTGAAGATGAACCCCTACGAGTCAT
CGTGCGAGTCGCCGGATTTGCTTCCTCCGTCAAAAAGGCGGAGAGCCCCT
TCCTTCGTGAAGGGAGTTAGCATTCGGCCGCAGAGCAGTCAGGCGAGAGG
GGAGGCGCAAAAAATGATGGTGATGGCGTCGGTAGCTGTCGGAGTTAGCA
TTCGGCCGCAGAGCAGTCAGGCGAGAGGGGAGGCGCAAAAAATGATGGTG
ATGGCGTCGGTAGCTGTC
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