mRNA_F-serratus_M_contig911.20539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig911.20539.1
Unique NamemRNA_F-serratus_M_contig911.20539.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A0H5RDG4_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RDG4_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 1.370e-15
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  309 MDPELERTFRDHGASVNAVSYSPNMKQLVSAADSKLM-LWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            +DP +ERTFR    SV +V+++PNMKQ+V+A+D  ++ +W+F+  +RA  F GHT  V  V+FS  G L+ASAS+D T+R W P  +G S++
Sbjct:    6 LDPCVERTFRGIRGSVTSVAFNPNMKQVVTASDDNIVTVWNFKPDMRAFRFVGHTAAVLGVDFSSSGRLVASASKDGTLRFWQPRVKGTSTL 97          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: D8UD37_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UD37_VOLCA)

HSP 1 Score: 91.7 bits (226), Expect = 2.230e-15
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQLVSAA-DSKLMLWSFRSQLRALPFKGHTGT--------VHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            DP LER+FR H  +V +V ++ NMKQLVS + D+ +M+W+F+ QLRA  F GH  +        V+ V FSP  AL+AS S+DRTVRLW P+  G S+V
Sbjct:    2 DPTLERSFRGHKDAVTSVCFNHNMKQLVSGSLDNCVMVWNFKPQLRAFRFAGHKASHMYRTLAGVYSVAFSPVHALIASGSKDRTVRLWQPTVEGKSTV 100          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A7S1HG56_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HG56_HEMAN)

HSP 1 Score: 85.1 bits (209), Expect = 7.640e-14
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQLVSAADS-KLMLWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMP--SARGGSSV 581
            DP LER+FR H  +V +V ++PNMKQL+S AD   LM+W+F+  LR++    H G V  V  + +  ++AS S+DRTVRLW P  S++G S+V
Sbjct:   37 DPTLERSFRGHQDAVRSVVFNPNMKQLLSGADDGDLMVWNFKPTLRSIRCSDHQGPVLSVAIAQEKGIIASGSKDRTVRLWAPHISSKGKSTV 129          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A814CXG2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814CXG2_9BILA)

HSP 1 Score: 83.6 bits (205), Expect = 5.510e-13
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQLVSAA-DSKLMLWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPS 560
            DP+LE+ F+ H ++V  +S+SPN KQLVS + D+ L LW F+ Q+RA  F      VH V FSP G L+AS S+D+ VRLW+PS
Sbjct:    3 DPKLEKHFKSHRSAVTCLSFSPNTKQLVSGSLDACLFLWPFKPQVRAYRFDA----VHSVCFSPSGHLIASGSKDKKVRLWIPS 82          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A7L1EBV4_OENON (POC1B protein (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7L1EBV4_OENON)

HSP 1 Score: 78.6 bits (192), Expect = 1.280e-11
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQL--------VSAADSKLMLWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            DP L R F  H A+V  V+++ N   L          + D  L+LW   +Q RA  F+GH   V  V++SPDG ++ASAS D TVRLW+P   G SSV
Sbjct:    7 DPILIRPFHGHTAAVTGVAFNANAAGLGEGGPGAVTCSVDRLLILWKLTTQCRAYRFEGHAEAVTSVDYSPDGQVLASASHDHTVRLWIPCIHGESSV 104          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A0K2TYU8_LEPSM (Uncharacterized protein n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TYU8_LEPSM)

HSP 1 Score: 79.0 bits (193), Expect = 1.500e-11
Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQLV-SAADSKLMLWSFRSQ--LRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSS 578
            +P+L   FR     V  +S+ P++KQ+  S+ DS +M+W+F S+  L+AL + GHT  V  +++SP G+L+AS+S+DRT+R+W+  +  G S
Sbjct:    3 EPQLAHQFRGLKGGVTGLSFHPHIKQVAASSLDSNIMVWNFSSENNLKALRYSGHTDAVLDIQYSPSGSLLASSSKDRTIRIWVVKSVKGQS 94          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-11
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  303 FPMDPELERTFRDHGASVNAVSYSPNMKQLVSAA-DSKLMLWSFRSQLRALPFKG 464
            FP+DPELERTFR  GA+V  VSYSP+MKQLVS+A D+ LM+W+FR+QLRAL  KG
Sbjct:   42 FPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLKG 96          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A5E4R852_9NEOP (ANAPC4_WD40 domain-containing protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4R852_9NEOP)

HSP 1 Score: 76.3 bits (186), Expect = 6.120e-11
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  309 MDPELERTFRDHGASV-NAVSYSPNMKQLVSAA-DSKLMLWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            ++P LE+    H  S+ ++++++PN KQ+     DS ++LW      +   F+GH   V  V FSPDG  MASASRDRT+RLW+P+  G + V
Sbjct:    4 LEPSLEKVLNGHHKSIISSLAFNPNEKQIACGCLDSSVLLWDLNGT-KNYRFQGHNEAVTDVVFSPDGRYMASASRDRTIRLWVPTVTGSTGV 95          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A7K9BRJ1_9PICI (POC1B protein (Fragment) n=1 Tax=Psilopogon haemacephalus TaxID=2585815 RepID=A0A7K9BRJ1_9PICI)

HSP 1 Score: 75.5 bits (184), Expect = 8.560e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  396 SAADSKLMLWSFRSQLRALPFKGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            S+ D  LM+W  ++Q RA  F GH   V  V+FSPDG L+ASASRDRTVRLW+P   G SSV
Sbjct:    3 SSLDGLLMVWKLKAQSRAYKFVGHEEAVSSVQFSPDGQLLASASRDRTVRLWIPCIHGESSV 64          
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Match: A0A821T6F2_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821T6F2_9BILA)

HSP 1 Score: 76.6 bits (187), Expect = 8.670e-11
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  312 DPELERTFRDHGASVNAVSYSPNMKQLVSAA-DSKLMLWSFRSQLRALPFKGHT------------------------------------------------GTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSV 581
            DP+LE+ FR H ++V ++S+SPN KQ+VS + DS L +W F+ Q+RA  F GH                                                   V+ V FSP G L+AS S+D+T+R+W+PS +G S+V
Sbjct:    3 DPKLEKQFRSHRSTVTSLSFSPNTKQIVSGSLDSCLFVWPFKPQVRAYRFVGHNVSNSILKNRDSHIYRYELKVETFYFQLNSSLTLLLNIAAVLFRLCLTQDAVYSVCFSPSGHLIASGSKDKTIRVWIPSVKGESTV 141          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig911.20539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5RDG4_9EUKA1.370e-1546.74Uncharacterized protein n=1 Tax=Spongospora subter... [more]
D8UD37_VOLCA2.230e-1549.49Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A7S1HG56_HEMAN7.640e-1447.31Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A814CXG2_9BILA5.510e-1351.19Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A7L1EBV4_OENON1.280e-1142.86POC1B protein (Fragment) n=3 Tax=Passeriformes Tax... [more]
A0A0K2TYU8_LEPSM1.500e-1140.22Uncharacterized protein n=2 Tax=Lepeophtheirus sal... [more]
D8LSH2_ECTSI2.170e-1170.91Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A5E4R852_9NEOP6.120e-1140.86ANAPC4_WD40 domain-containing protein n=1 Tax=Lept... [more]
A0A7K9BRJ1_9PICI8.560e-1158.06POC1B protein (Fragment) n=1 Tax=Psilopogon haemac... [more]
A0A821T6F2_9BILA8.670e-1133.09Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig911contigF-serratus_M_contig911:140295..147366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog3067.XP_002956559.1
KEGG koko:K16482
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs2CMZ3@1,2QSVJ@2759,34HDY@3041,37RBQ@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons9
Model size3543
Cds size1953
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932653.6692972-UTR-F-serratus_M_contig911:140294..1406021622932653.6692972-UTR-F-serratus_M_contig911:140294..140602Fucus serratus maleUTRF-serratus_M_contig911 140295..140602 +
1690964405.859456-UTR-F-serratus_M_contig911:140294..1406021690964405.859456-UTR-F-serratus_M_contig911:140294..140602Fucus serratus maleUTRF-serratus_M_contig911 140295..140602 +
1622932653.8218641-UTR-F-serratus_M_contig911:146010..1462011622932653.8218641-UTR-F-serratus_M_contig911:146010..146201Fucus serratus maleUTRF-serratus_M_contig911 146011..146201 +
1690964405.9800293-UTR-F-serratus_M_contig911:146010..1462011690964405.9800293-UTR-F-serratus_M_contig911:146010..146201Fucus serratus maleUTRF-serratus_M_contig911 146011..146201 +
1622932653.844454-UTR-F-serratus_M_contig911:146275..1473661622932653.844454-UTR-F-serratus_M_contig911:146275..147366Fucus serratus maleUTRF-serratus_M_contig911 146276..147366 +
1690964405.9903042-UTR-F-serratus_M_contig911:146275..1473661690964405.9903042-UTR-F-serratus_M_contig911:146275..147366Fucus serratus maleUTRF-serratus_M_contig911 146276..147366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932653.6875725-CDS-F-serratus_M_contig911:140602..1407401622932653.6875725-CDS-F-serratus_M_contig911:140602..140740Fucus serratus maleCDSF-serratus_M_contig911 140603..140740 +
1690964405.8761086-CDS-F-serratus_M_contig911:140602..1407401690964405.8761086-CDS-F-serratus_M_contig911:140602..140740Fucus serratus maleCDSF-serratus_M_contig911 140603..140740 +
1622932653.704926-CDS-F-serratus_M_contig911:141176..1414011622932653.704926-CDS-F-serratus_M_contig911:141176..141401Fucus serratus maleCDSF-serratus_M_contig911 141177..141401 +
1690964405.902377-CDS-F-serratus_M_contig911:141176..1414011690964405.902377-CDS-F-serratus_M_contig911:141176..141401Fucus serratus maleCDSF-serratus_M_contig911 141177..141401 +
1622932653.7205732-CDS-F-serratus_M_contig911:141844..1419211622932653.7205732-CDS-F-serratus_M_contig911:141844..141921Fucus serratus maleCDSF-serratus_M_contig911 141845..141921 +
1690964405.9138608-CDS-F-serratus_M_contig911:141844..1419211690964405.9138608-CDS-F-serratus_M_contig911:141844..141921Fucus serratus maleCDSF-serratus_M_contig911 141845..141921 +
1622932653.7325795-CDS-F-serratus_M_contig911:142437..1426121622932653.7325795-CDS-F-serratus_M_contig911:142437..142612Fucus serratus maleCDSF-serratus_M_contig911 142438..142612 +
1690964405.9271476-CDS-F-serratus_M_contig911:142437..1426121690964405.9271476-CDS-F-serratus_M_contig911:142437..142612Fucus serratus maleCDSF-serratus_M_contig911 142438..142612 +
1622932653.7483413-CDS-F-serratus_M_contig911:143440..1435661622932653.7483413-CDS-F-serratus_M_contig911:143440..143566Fucus serratus maleCDSF-serratus_M_contig911 143441..143566 +
1690964405.940398-CDS-F-serratus_M_contig911:143440..1435661690964405.940398-CDS-F-serratus_M_contig911:143440..143566Fucus serratus maleCDSF-serratus_M_contig911 143441..143566 +
1622932653.7656577-CDS-F-serratus_M_contig911:143980..1443121622932653.7656577-CDS-F-serratus_M_contig911:143980..144312Fucus serratus maleCDSF-serratus_M_contig911 143981..144312 +
1690964405.9496908-CDS-F-serratus_M_contig911:143980..1443121690964405.9496908-CDS-F-serratus_M_contig911:143980..144312Fucus serratus maleCDSF-serratus_M_contig911 143981..144312 +
1622932653.7814443-CDS-F-serratus_M_contig911:144702..1448851622932653.7814443-CDS-F-serratus_M_contig911:144702..144885Fucus serratus maleCDSF-serratus_M_contig911 144703..144885 +
1690964405.9596004-CDS-F-serratus_M_contig911:144702..1448851690964405.9596004-CDS-F-serratus_M_contig911:144702..144885Fucus serratus maleCDSF-serratus_M_contig911 144703..144885 +
1622932653.8042476-CDS-F-serratus_M_contig911:145313..1460101622932653.8042476-CDS-F-serratus_M_contig911:145313..146010Fucus serratus maleCDSF-serratus_M_contig911 145314..146010 +
1690964405.9695818-CDS-F-serratus_M_contig911:145313..1460101690964405.9695818-CDS-F-serratus_M_contig911:145313..146010Fucus serratus maleCDSF-serratus_M_contig911 145314..146010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig911.20539.1prot_F-serratus_M_contig911.20539.1Fucus serratus malepolypeptideF-serratus_M_contig911 140603..146010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig911.20539.1

>prot_F-serratus_M_contig911.20539.1 ID=prot_F-serratus_M_contig911.20539.1|Name=mRNA_F-serratus_M_contig911.20539.1|organism=Fucus serratus male|type=polypeptide|length=651bp
MDPELERTFRDHGASVNAVSYSPNMKQLVSAADSKLMLWSFRSQLRALPF
KGHTGTVHHVEFSPDGALMASASRDRTVRLWMPSARGGSSVLKSHMGGVR
HASFARSGRLLITASDDKTIKIWSVPSKKFMCTLTGHNNWVRCATFSPDS
RLATSCGDDKTVRLWDVQTRKCLHTFFDHDGSVRQTRFSPDGTCVASCSA
DKTIKLWDTRSHKLLQHYRAHDDDVTSLSFHESGNFLLSSSADASIKIWD
LREGRLAYTLKGHSGSVRACAFSPDGTLFASGGRDGVVMSWRSHLATKFV
GVGEGSGASKEATVPKGDFDVSGEGNGHGRLANGAGRGVTQEGGRRRTAL
GVRTTNSRSPGESVRERRRGSGGRARQPESAHPTGDGTLGRTPRVRDEDY
FLGEKPPAMDAAGTSDAFEYTASSYSRDDSHREFPPFGDIDSSGGGSSQR
RFVDDQQVRLDIGDLDETPRGVAFLSEATAVRGTSRLSVGYRPSLRETTV
APVDTMREAGAAVGWDTGIHGEWRAERNAPVNDPIGGDEVAVAAAAALDG
KSSGMALDERVGSTVSEEVKRYERTRGFVSNDRGGVAEGDAYHRGALPEG
LAGTLEHIVGQLDMLTRTVEVLEKRLAFTEDRLQSGGVGCACGSAVDRGV
*
back to top

mRNA from alignment at F-serratus_M_contig911:140295..147366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig911.20539.1 ID=mRNA_F-serratus_M_contig911.20539.1|Name=mRNA_F-serratus_M_contig911.20539.1|organism=Fucus serratus male|type=mRNA|length=7072bp|location=Sequence derived from alignment at F-serratus_M_contig911:140295..147366+ (Fucus serratus male)
TTTCCTCAACAGCTTCAGTGACTCGGCAAGGCTACTGGCGAAAGCCATAT CATTTCTCAACGGGACGGCTTGTCTCGTCCAGTGATCCTTTTCCCGTTGT TGCTACACAGACCCCTCCCTCTCACGCAAGTAAAAATGAGTCGTCCTTCG ATGGCGAGGGCGTGCGTGACACGTTAAAGGTGACCCTCTCAACAAAGTCC CAATAACTCCTGACAAGCACGCGTTTCCGCTGGGCGAAAGCAGGTAGCTC CCCGCATCCTTCTGTTACAAGCGCAAGCCGAAGCGTGCAGGCCCCGCACT CCTTTCCGATGGATCCTGAGCTGGAGCGTACTTTCCGTGATCACGGTGCC TCGGTGAACGCTGTATCGTACTCCCCGAATATGAAGCAGCTCGTGTCGGC GGCAGACAGCAAACTCATGCTTTGGAGTTTTCGCAGCCAGCTGAGGGTGA GTTTTTCGATAGCGGCTATTGGAGCTCGGCCAGACAAGGCGGGCTGAAAA ACTCTCTTGAATGATTGTGTTTTTTTGTTTAACGGATATGCCGCCGTCGT TGCTCCAGTCTCTCATTGCGGCCCATTTATTTTCTGCAAAACATCGAGTC ATATTCTCGCTTCTGCCAGTGTATACACGTAAGGGCCATACCTACCTGGT GCTGTAGTTGGCAGTACACCCCACCGCTCCTGGCGAACGGGGTGGCTTTT ACATACATATATAAATAGTTTCGCGCCATCCTTATCACCAACCCCTTGGG CAACATAAAGATGCTTGTGAGTACGCTCTCGTGTGTTGTGCACTAACAGC TTTACGGTGGCGACGAACTGACAAACACCGCAACACTCGTTTGTGCGTGG TGGCCGTGCCGATCCTGTCGCGTACCTGATAGGCGTTACCGTTCAAGGGT CACACGGGAACTGTTCATCACGTGGAGTTCTCCCCAGATGGCGCATTGAT GGCCTCGGCTTCCAGGGATCGAACCGTGAGGCTGTGGATGCCTTCAGCAC GGGGAGGGTCGAGCGTTCTCAAGAGTCACATGGGCGGCGTAAGGCACGCC TCCTTTGCGCGTAGCGGACGACTGCTCATCACGGCCTCCGACGACAAAAC CATTAAGGTAATACACCGCACAGTGGAGCATCCGTGATGTAATACGGCGC TCGCGGCCTTTCCTAGCCGCCTTCTATCCCCATCTCCGTGTACAGCTTCA TGCGGCCCCTTGTGCGCCTAAGTCTCTGCGATAAGTGCGTTGCGTCTGAC TCGGATGAAGATGCTTCCTGTATTTTTGACCCTGCGTGAGTACTATAACT CCTTTTTATCTTCGACTTTGACTTTTTGTACGGTAAAAGCGGCGACACTT GCATTCGTCCCTGAATCCTTATTGATCGCTTATGCCCCACGTTCTCGACG AAACCAAGCCCTGAGCGAGTTTTCTCAAAGCGTCAATAACGGGTGCGACG AAGACACAGGAGAGAGTGGGTAATGCGACTTCCGGCCATGCTCATTCCCC CCTGTCCGCATCCGTGCTATATTCTCCCTGTCTGTATCTCCTGTTTCCAG ATATGGTCGGTGCCGTCGAAGAAGTTCATGTGTACCCTTACCGGACACAA CAACTGGGTCCGGTGTGCGACCTTCAGGTGTTGACTGACTCCCGCGCGCG ATCGCAACTTAAGCCTGGTTCGCGTGACACAACCGCGCACCCACACCGGC CATATCGTTCCCCTTCCACAGTGGAGCTGTTGCGGCTCCTATATTATTAC GTGCGACGACATGTGTCTTAAAATGAACAATCATCGACTTTTAGAGAAGA GTCTCAAGCCGATCAAGCCTGGGCAAAAATGGATGGGTATCAGATAGCGG TTCGCTTCGTATAAGTTTGCAAATCCTTGTACAAGGTGTGTGTTTGACCT CGTTTTACGTTCGGGCGAACACAAAAAAAAACACATATAAATGTACATCT ATGATATACAAAGACGGTGGGGTGAAAAGCGATTATTATCAATTCCTTAT CTTTTATTTTCGCAGTAGCGGATCTTACCGTGTTTCCACGACCGCCTGCA AGGCGTCATTTAACCACCGTGCGACTCACCCTATGTGTGTGTACGCGCGT GTGTTTGGGGGGGGTTCTGTACCTTTTTTTTTTTTCTATTTAGCCCCGAC TCGCGCCTTGCTACTTCCTGTGGAGATGACAAGACGGTCCGGCTCTGGGA CGTCCAGACACGCAAGTGCCTGCACACGTTTTTCGATCACGACGGGTCGG TGCGTCAGACGCGTTTCAGCCCGGACGGGACTTGTGTGGCGTCGTGCTCG GCAGACAAGACGATCAAGGCGAGCTCGTGCTGTCGATATACATACGCATA CCTGGTATATTGTTTCTGTGGGTTTGTGAGTTTTTCCGTTAGCAAGGAAA CCGTAAGTAAGGCGTGCGGGACTTCCTCTGGGTGACTCCCTTCCCAACTG TCTTTTTCTCTCAACTCTGTCGAAAAATTTAATGTGCCATAAAGCATTAA CTCAGCCTGAAGCGCACTGCTTTCTCTACGGCACTTCCATTAACTGGAGC TAGTGCTAGGACCTCTAATTACCATCCTGCCTGTGGTCACAAAGGATCTT CCCATCTCTCCCCGGTTCACGCCTTACAATTTTTATCGCGATGCAAGTTC AGCACTCTTACAACTCGTCAACCACTGGTTGAATTTTATTTACTTACGTT CCCACGCTTTCCGTTACGAAAGAAATAACACAAATTCTGCTTAAGCTAAG AATCGAACTCACGACTTCCGCACTAGCAGGAATGCAGGTTACCTACTAGA CCACTCGGGCAAAACCTGTTGGAGAGGGATGAAACCCCTGGTCGTTACAG CCGAACGCCGTGAATTTCATAAGCCCGTGCATCGGTTCCTCAATCCCAAT CCTCTTTCCCCTCTATCGACGCATTTCAATCCCAATACTCTCTACGGCAC TTACAGTAACTGGAGCTAGAGCTAGTATTGGAATTGGAAAATATATCCGA GTGGGATGAAACCCCTGGTCGTTGCAGCCGAACGGCGTGAATTTCATAAA CCCGTGCATTGGTTTCCCAATCCCAATCCTCTTCCCCCTTTATCTACGCG TTTCAACGTCGGCTCCTTGGGCACCGTACGCTGCGTCTCCTCCCAGCTCT GGGACACTCGATCGCACAAGCTTCTGCAGCACTACCGCGCTCACGACGAC GACGTGACCTCGCTAAGCTTCCACGAGTCGGGAAACTTCCTGTTGTCTTC GTCCGCGGACGCCAGCATCAAGGTAAGACCCAAGCACACACAATTAACAT GTGGCTACGTACCGTATTGTAATGTAGCGTTGTAACGATCTGCTATTTTA GTGGAAAAAGAAGGCGGAATCCGAACAATACCAGGTTATAAGTATAGACT GACGCGACGCCCGTGCTGCCCGGTTGTTGTTTTTTTATTCAGCCCCTTCC GTTGATGATTGCTCGTTCAATGGCTAGGCTATAGGCTAGGCTAGGCTAGG CGCGCTACAGGCTCTTTCCTTCCAACACTCCGGTGGATGAGGGATGTTCT TGAGTCCCGCTCACCCGGCGCATCCCCGCTTGATTGAGTGGGGCGCCTCA AATGATTCAAGCTTCTGTCGGGGTTTCCCCCCCGTTTTTTGTTTTTTGCT TTTCCCTCACCATCCCGCATTGGGTGCGCCCCCAAGATCTGGGACCTGCG CGAGGGACGGTTGGCGTACACCCTGAAGGGTCACTCTGGTTCCGTGAGAG CTTGCGCCTTCAGCCCTGACGGCACCCTCTTCGCCTCTGGAGGTCGCGAT GGGGTGGTGATGTCCTGGCGGAGCCATCTCGCCACGAAATTCGTTGGCGT AGGAGAAGGCTCCGGAGCGTCGAAGGAAGCGACAGTTCCGAAGGGAGATT TCGATGTATCAGGGGAGGGGAACGGTCATGGGCGTTTGGCAAATGGCGCT GGAAGAGGAGTAACGCAAGAGGGAGGAAGGAGACGCACAGCCCTCGGTGT CCGCACGACAAACTCACGGTGAGTAGTTTTTCCGTCACACATTCGCGCCA TTCGTTGTGCGGCGCTCCCAGATACCAGCCCTGCCCCGTTATCTTGAGAG CGTGCGAGGAAGGTGCGGAGTGACCGTTTATGCCGGGAAATGTTGTTGTG TGCTCTTGCTATTTTTACGCAATTATCGGAGACTATCGCGTCTCTCACCA CACACAAGGGTTCACCTAAACTAAAAAAATTACTGTATAGGCCGGGCATT TTGGTCGAGTTTATCCCAGTAAGAGCGTAATATGTCTGTTTCATTCGAGA GAGAAAAAAATGTCCGCAACTCCGCACGGTTTAGTCGTCTAAAAGCTGCT TTCACCCGGCACACGAGCGGAACTGATGCGCGTCATATCTTCGTCGTCTC ACGACCAGTTCTCCCGGGGAAAGCGTCAGAGAGCGTAGGCGCGGCTCCGG CGGGCGGGCAAGGCAGCCGGAATCGGCGCATCCTACGGGAGATGGTACCC TTGGAAGAACGCCTCGCGTCAGGGATGAAGATTATTTTCTAGGAGAGAAG CCACCCGCGATGGATGCTGCTGGCACGAGCGATGCGTTCGAGTGAGAATA TGACGTTTTCTACTTATATCTTGACCCGTGGCGTTGCTATTTTACTTTAG CATTAAAATGTGGATGTCGTGTCCCCAACAGCGCGTGACATTCTGCCGCG TGTGGGGTCAGAGGTGGCGGTTACTCGCGATCCCCGACTCACAGGGGGGG AAACTAATATGCCACTTAACGATGCCCGTGCGTTGATGGTGGAGAAGCTG CCTCGTCCGCCGTGTTGTATTTCCCCTGCCAACCTCACGCACTGTCATGG TGCAAACCTCGTTGCGCGTGGCGGACGCTGGCTGGGTGCGCGGTGATACT AACGACGTTCTGTACGTCTATCGACAATGCTCTCTGTGGAGAGCAATCGG CCTCCTTGCCTTGCTCTTTCGATTAAAAGCGAACCCTGCTTATGTTTGTG ATCACCCCCAAAATCTTAGGTACACGGCCTCATCTTATTCCCGTGACGAC TCCCACCGAGAGTTCCCTCCGTTTGGCGACATTGACAGTAGCGGCGGCGG CTCCAGCCAGCGCAGATTTGTCGATGACCAGCAAGTTCGCCTCGATATCG GCGACCTCGACGAAACGCCGCGTGGCGTTGCCTTCTTGTCGGAGGCGACC GCGGTTCGTGGGACGTCGCGGCTTTCAGTAGGTTATAGGCCATCGCTCCG TGAGACCACTGTTGCGCCCGTTGATACCATGCGGGAAGCTGGGGCTGCTG TGGGGTGGGACACCGGAATCCACGGCGAGTGGAGAGCTGAAAGAAACGCT CCCGTGAATGACCCAATCGGAGGCGACGAGGTTGCCGTTGCTGCTGCTGC TGCACTAGATGGGAAGTCGTCCGGAATGGCCCTCGACGAAAGGGTGGGGA GTACCGTGTCTGAAGAGGTAAAGAGGTACGAACGGACGCGCGGTTTCGTT TCTAATGATCGAGGAGGCGTCGCGGAGGGTGATGCTTATCATCGGGGAGC CCTGCCTGAAGGGTTGGCCGGAACGCTAGAGCATATTGTGGGACAGCTGG ACATGCTCACGCGCACCGTAGAGGTGCTAGAGAAGCGCTTGGCCTTCACA GAGGACCGTTTACAGTCCGGGGGTGTTGGCTGTGCATGCGGGAGCGCGGT AGATCGCGGAGTGTAGTCTTCATGAGGCTTGGGTTGACGTTCACGGTATA TGTTCGCTTCCTTGCTCTCCTGGCTGACCGTGATACTCCTGTAATAGGGA AAACACAACTAAAAAATAAGTCGCTTGCTTTTTTTTTTATACCAGGGTAC ATTCTAGTCACCGTATCTTGACTACTATTAATACTATTATCCACGTGACG ACTGGAGGTCGGTGTATTGTAGCCGTTGTCGTCAAAAACGGATGCGGCGA GAATGCACATGCCGCTGTGTAACACTGATAGCTGTACTGGTATTTACCAT GCCGATTGAATGACGCCTCTGTAGGCGCTTCAAGGATAGGGTGTAGCACT GTGGCATCGAAAAGGGTCGTTCGTTAAATGAGTGCTCGAATATGTCGCCC TCAAGTTTCCAACGCCGTGCAGAACAGATCCACGTGTAATCCGCCGTGGT TCCTGTGTGGAAACTCCTTGGGTCCGACCGACCGACTTGAGGCGATTCTT GCAATCTTCTCTTGAGGTATAGCACGGTAGCACGGTAGAGAGAGCTAGCT GCACATGTACCAGGTAGGAATCAAGAGGATTTTTTACTTGCGTATTTTAT TTTTTAAATCAGGGCAGCTCATCTTCCTATAAATGAGGAGAATGCGTTGT TCATGCACACGTCGCCTATTAATAGCTGTGGTCGGATCCGTCTGTAAACC GCTCGACGATACCGGATATTCGTGCATATCGTCTCGTTGAGAAATATTTT TTTTCGAGGGAAAGGAGGGAGAGTGCTTTAGAGGTTGTATCATGGCTAAA TATACGGTATACACAACAGTGTAGTCTCTTGTACCAGGTACAtTTTTTTT TTTTTTTAGGTGGCGCTTGTGTTTTTTGTTCCTTCTTTCAGGAGACACGA TGACCGAACAGTAGGTTATTGGTGGTGCAAGGATCGGAACCTGTAGGGTG TTGCGTACTCGTGGCCCATGCCCGATTCTGTGACTTTTCGTTTGCGACGG TAATAACGATGGTTCCTTTTTCTATACAGCATGCACTCTGTATATTATAT TATACGGTATTAAATCGCCTCCGATATGCGGTCTGTCTTTATCGTACACA CATGTCCACTAATAATAACTGTACCAGCCAGCAGTGGATGTTGAAAAAGA GGGGCGCAAAAAAATGGTACTTGGTACATAGTAAAGTTTCCTGAGTAGGC AGCACCGGTTATTAAAGCTACTTTGGAGACAGCTGGCCTTGTGCCCGCGG ACTCTCGGCAATGAACGCGATCGGTACGCAAAATTGCGTGACCCGATAAA CTCGGGACTGACCCGTTAGCGGTTGACGGTAATATTAATAGTCATAGTCG CGGAAAGCGAGAGGAAGGAGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig911:140295..147366+

>mRNA_F-serratus_M_contig911.20539.1 ID=mRNA_F-serratus_M_contig911.20539.1|Name=mRNA_F-serratus_M_contig911.20539.1|organism=Fucus serratus male|type=CDS|length=3906bp|location=Sequence derived from alignment at F-serratus_M_contig911:140295..147366+ (Fucus serratus male)
ATGGATCCTGAGCTGGAGCGTACTTTCCGTGATCACGGTGCCTCGGTGAA
CGCTGTATCGTACTCCCCGAATATGAAGCAGCTCGTGTCGGCGGCAGACA
GCAAACTCATGCTTTGGAGTTTTCGCAGCCAGCTGAGGATGGATCCTGAG
CTGGAGCGTACTTTCCGTGATCACGGTGCCTCGGTGAACGCTGTATCGTA
CTCCCCGAATATGAAGCAGCTCGTGTCGGCGGCAGACAGCAAACTCATGC
TTTGGAGTTTTCGCAGCCAGCTGAGGGCGTTACCGTTCAAGGGTCACACG
GGAACTGTTCATCACGTGGAGTTCTCCCCAGATGGCGCATTGATGGCCTC
GGCTTCCAGGGATCGAACCGTGAGGCTGTGGATGCCTTCAGCACGGGGAG
GGTCGAGCGTTCTCAAGAGTCACATGGGCGGCGTAAGGCACGCCTCCTTT
GCGCGTAGCGGACGACTGCTCATCACGGCCTCCGACGACAAAACCATTAA
GGCGTTACCGTTCAAGGGTCACACGGGAACTGTTCATCACGTGGAGTTCT
CCCCAGATGGCGCATTGATGGCCTCGGCTTCCAGGGATCGAACCGTGAGG
CTGTGGATGCCTTCAGCACGGGGAGGGTCGAGCGTTCTCAAGAGTCACAT
GGGCGGCGTAAGGCACGCCTCCTTTGCGCGTAGCGGACGACTGCTCATCA
CGGCCTCCGACGACAAAACCATTAAGATATGGTCGGTGCCGTCGAAGAAG
TTCATGTGTACCCTTACCGGACACAACAACTGGGTCCGGTGTGCGACCTT
CAGATATGGTCGGTGCCGTCGAAGAAGTTCATGTGTACCCTTACCGGACA
CAACAACTGGGTCCGGTGTGCGACCTTCAGCCCCGACTCGCGCCTTGCTA
CTTCCTGTGGAGATGACAAGACGGTCCGGCTCTGGGACGTCCAGACACGC
AAGTGCCTGCACACGTTTTTCGATCACGACGGGTCGGTGCGTCAGACGCG
TTTCAGCCCGGACGGGACTTGTGTGGCGTCGTGCTCGGCAGACAAGACGA
TCAAGCCCCGACTCGCGCCTTGCTACTTCCTGTGGAGATGACAAGACGGT
CCGGCTCTGGGACGTCCAGACACGCAAGTGCCTGCACACGTTTTTCGATC
ACGACGGGTCGGTGCGTCAGACGCGTTTCAGCCCGGACGGGACTTGTGTG
GCGTCGTGCTCGGCAGACAAGACGATCAAGCTCTGGGACACTCGATCGCA
CAAGCTTCTGCAGCACTACCGCGCTCACGACGACGACGTGACCTCGCTAA
GCTTCCACGAGTCGGGAAACTTCCTGTTGTCTTCGTCCGCGGACGCCAGC
ATCAAGCTCTGGGACACTCGATCGCACAAGCTTCTGCAGCACTACCGCGC
TCACGACGACGACGTGACCTCGCTAAGCTTCCACGAGTCGGGAAACTTCC
TGTTGTCTTCGTCCGCGGACGCCAGCATCAAGATCTGGGACCTGCGCGAG
GGACGGTTGGCGTACACCCTGAAGGGTCACTCTGGTTCCGTGAGAGCTTG
CGCCTTCAGCCCTGACGGCACCCTCTTCGCCTCTGGAGGTCGCGATGGGG
TGGTGATGTCCTGGCGGAGCCATCTCGCCACGAAATTCGTTGGCGTAGGA
GAAGGCTCCGGAGCGTCGAAGGAAGCGACAGTTCCGAAGGGAGATTTCGA
TGTATCAGGGGAGGGGAACGGTCATGGGCGTTTGGCAAATGGCGCTGGAA
GAGGAGTAACGCAAGAGGGAGGAAGGAGACGCACAGCCCTCGGTGTCCGC
ACGACAAACTCACGATCTGGGACCTGCGCGAGGGACGGTTGGCGTACACC
CTGAAGGGTCACTCTGGTTCCGTGAGAGCTTGCGCCTTCAGCCCTGACGG
CACCCTCTTCGCCTCTGGAGGTCGCGATGGGGTGGTGATGTCCTGGCGGA
GCCATCTCGCCACGAAATTCGTTGGCGTAGGAGAAGGCTCCGGAGCGTCG
AAGGAAGCGACAGTTCCGAAGGGAGATTTCGATGTATCAGGGGAGGGGAA
CGGTCATGGGCGTTTGGCAAATGGCGCTGGAAGAGGAGTAACGCAAGAGG
GAGGAAGGAGACGCACAGCCCTCGGTGTCCGCACGACAAACTCACGTTCT
CCCGGGGAAAGCGTCAGAGAGCGTAGGCGCGGCTCCGGCGGGCGGGCAAG
GCAGCCGGAATCGGCGCATCCTACGGGAGATGGTACCCTTGGAAGAACGC
CTCGCGTCAGGGATGAAGATTATTTTCTAGGAGAGAAGCCACCCGCGATG
GATGCTGCTGGCACGAGCGATGCGTTCGATTCTCCCGGGGAAAGCGTCAG
AGAGCGTAGGCGCGGCTCCGGCGGGCGGGCAAGGCAGCCGGAATCGGCGC
ATCCTACGGGAGATGGTACCCTTGGAAGAACGCCTCGCGTCAGGGATGAA
GATTATTTTCTAGGAGAGAAGCCACCCGCGATGGATGCTGCTGGCACGAG
CGATGCGTTCGAGTACACGGCCTCATCTTATTCCCGTGACGACTCCCACC
GAGAGTTCCCTCCGTTTGGCGACATTGACAGTAGCGGCGGCGGCTCCAGC
CAGCGCAGATTTGTCGATGACCAGCAAGTTCGCCTCGATATCGGCGACCT
CGACGAAACGCCGCGTGGCGTTGCCTTCTTGTCGGAGGCGACCGCGGTTC
GTGGGACGTCGCGGCTTTCAGTAGGTTATAGGCCATCGCTCCGTGAGACC
ACTGTTGCGCCCGTTGATACCATGCGGGAAGCTGGGGCTGCTGTGGGGTG
GGACACCGGAATCCACGGCGAGTGGAGAGCTGAAAGAAACGCTCCCGTGA
ATGACCCAATCGGAGGCGACGAGGTTGCCGTTGCTGCTGCTGCTGCACTA
GATGGGAAGTCGTCCGGAATGGCCCTCGACGAAAGGGTGGGGAGTACCGT
GTCTGAAGAGGTAAAGAGGTACGAACGGACGCGCGGTTTCGTTTCTAATG
ATCGAGGAGGCGTCGCGGAGGGTGATGCTTATCATCGGGGAGCCCTGCCT
GAAGGGTTGGCCGGAACGCTAGAGCATATTGTGGGACAGCTGGACATGCT
CACGCGCACCGTAGAGGTGCTAGAGAAGCGCTTGGCCTTCACAGAGGACC
GTTTACAGTCCGGGGGTGTTGGCTGTGCATGCGGGAGCGCGGTAGATCGC
GGAGTGTAGGTACACGGCCTCATCTTATTCCCGTGACGACTCCCACCGAG
AGTTCCCTCCGTTTGGCGACATTGACAGTAGCGGCGGCGGCTCCAGCCAG
CGCAGATTTGTCGATGACCAGCAAGTTCGCCTCGATATCGGCGACCTCGA
CGAAACGCCGCGTGGCGTTGCCTTCTTGTCGGAGGCGACCGCGGTTCGTG
GGACGTCGCGGCTTTCAGTAGGTTATAGGCCATCGCTCCGTGAGACCACT
GTTGCGCCCGTTGATACCATGCGGGAAGCTGGGGCTGCTGTGGGGTGGGA
CACCGGAATCCACGGCGAGTGGAGAGCTGAAAGAAACGCTCCCGTGAATG
ACCCAATCGGAGGCGACGAGGTTGCCGTTGCTGCTGCTGCTGCACTAGAT
GGGAAGTCGTCCGGAATGGCCCTCGACGAAAGGGTGGGGAGTACCGTGTC
TGAAGAGGTAAAGAGGTACGAACGGACGCGCGGTTTCGTTTCTAATGATC
GAGGAGGCGTCGCGGAGGGTGATGCTTATCATCGGGGAGCCCTGCCTGAA
GGGTTGGCCGGAACGCTAGAGCATATTGTGGGACAGCTGGACATGCTCAC
GCGCACCGTAGAGGTGCTAGAGAAGCGCTTGGCCTTCACAGAGGACCGTT
TACAGTCCGGGGGTGTTGGCTGTGCATGCGGGAGCGCGGTAGATCGCGGA
GTGTAG
back to top