mRNA_F-serratus_M_contig911.20540.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig911.20540.1
Unique NamemRNA_F-serratus_M_contig911.20540.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig911.20540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig911contigF-serratus_M_contig911:204432..205137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size707
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932652.664327-CDS-F-serratus_M_contig911:204431..2051361622932652.664327-CDS-F-serratus_M_contig911:204431..205136Fucus serratus maleCDSF-serratus_M_contig911 204432..205136 +
1690964405.284307-CDS-F-serratus_M_contig911:204431..2051361690964405.284307-CDS-F-serratus_M_contig911:204431..205136Fucus serratus maleCDSF-serratus_M_contig911 204432..205136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig911.20540.1prot_F-serratus_M_contig911.20540.1Fucus serratus malepolypeptideF-serratus_M_contig911 204432..205136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig911.20540.1

>prot_F-serratus_M_contig911.20540.1 ID=prot_F-serratus_M_contig911.20540.1|Name=mRNA_F-serratus_M_contig911.20540.1|organism=Fucus serratus male|type=polypeptide|length=235bp
APPTLTGDAIEAVARTEAQPESPLSPSQVGGVPLITKTISSPSPSPLPAE
PGGVGDDTPSLTILSPALESPSIAAPTVTSLLRGPSFGAHGNRLRRSSLY
ATDQLMAAAETAAAEMAAVAAVGGTMETEAEARATMGAKATEVRAEEHRS
RRYKRRRARSLPPTWDNDKKQGYPPRAPRRPRLESRPCMQGATAVIENLA
LDEDCAVEDDAALNAWLHEVGERVGPGAGARSLGE
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mRNA from alignment at F-serratus_M_contig911:204432..205137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig911.20540.1 ID=mRNA_F-serratus_M_contig911.20540.1|Name=mRNA_F-serratus_M_contig911.20540.1|organism=Fucus serratus male|type=mRNA|length=706bp|location=Sequence derived from alignment at F-serratus_M_contig911:204432..205137+ (Fucus serratus male)
GCTCCTCCGACGCTGACAGGAGATGCAATTGAGGCGGTGGCGAGGACAGA
GGCTCAGCCAGAATCACCGCTTTCGCCGTCACAAGTTGGTGGTGTACCTC
TGATAACGAAGACGATCTCTTCTCCCTCGCCTTCTCCTCTTCCGGCAGAG
CCCGGCGGCGTTGGCGATGACACACCATCGCTGACGATCTTGAGCCCTGC
TCTAGAGAGCCCAAGTATCGCCGCGCCGACCGTGACCAGTCTGCTGAGGG
GTCCGTCCTTCGGCGCGCATGGGAATCGCCTACGCCGTTCTTCTCTTTAC
GCGACGGATCAACTAATGGCGGCAGCAGAAACGGCGGCAGCAGAAATGGC
GGCAGTGGCAGCGGTGGGAGGAACGATGGAAACGGAAGCGGAAGCGAGAG
CGACGATGGGAGCGAAAGCAACCGAAGTTAGGGCAGAAGAGCACCGAAGC
CGCAGGTACAAGAGGCGACGAGCGAGGTCGCTCCCCCCAACCTGGGACAA
TGACAAGAAGCAGGGTTATCCACCCCGCGCTCCTCGAAGGCCGCGGCTGG
AGTCACGGCCCTGTATGCAAGGCGCCACGGCCGTGATCGAGAATCTCGCA
CTGGACGAAGACTGCGCCGTAGAAGACGACGCGGCGTTAAATGCCTGGCT
ACATGAGGTGGGAGAGAGGGTCGGACCGGGGGCCGGAGCGAGGTCTTTGG
GAGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig911:204432..205137+

>mRNA_F-serratus_M_contig911.20540.1 ID=mRNA_F-serratus_M_contig911.20540.1|Name=mRNA_F-serratus_M_contig911.20540.1|organism=Fucus serratus male|type=CDS|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig911:204432..205137+ (Fucus serratus male)
GCTCCTCCGACGCTGACAGGAGATGCAATTGAGGCGGTGGCGAGGACAGA
GGCTCAGCCAGAATCACCGCTTTCGCCGTCACAAGTTGGTGGTGTACCTC
TGATAACGAAGACGATCTCTTCTCCCTCGCCTTCTCCTCTTCCGGCAGAG
CCCGGCGGCGTTGGCGATGACACACCATCGCTGACGATCTTGAGCCCTGC
TCTAGAGAGCCCAAGTATCGCCGCGCCGACCGTGACCAGTCTGCTGAGGG
GTCCGTCCTTCGGCGCGCATGGGAATCGCCTACGCCGTTCTTCTCTTTAC
GCGACGGATCAACTAATGGCGGCAGCAGAAACGGCGGCAGCAGAAATGGC
GGCAGTGGCAGCGGTGGGAGGAACGATGGAAACGGAAGCGGAAGCGAGAG
CGACGATGGGAGCGAAAGCAACCGAAGTTAGGGCAGAAGAGCACCGAAGC
CGCAGGTACAAGAGGCGACGAGCGAGGTCGCTCCCCCCAACCTGGGACAA
TGACAAGAAGCAGGGTTATCCACCCCGCGCTCCTCGAAGGCCGCGGCTGG
AGTCACGGCCCTGTATGCAAGGCGCCACGGCCGTGATCGAGAATCTCGCA
CTGGACGAAGACTGCGCCGTAGAAGACGACGCGGCGTTAAATGCCTGGCT
ACATGAGGTGGGAGAGAGGGTCGGACCGGGGGCCGGAGCGAGGTCTTTGG
GAGAAGCTCCTCCGACGCTGACAGGAGATGCAATTGAGGCGGTGGCGAGG
ACAGAGGCTCAGCCAGAATCACCGCTTTCGCCGTCACAAGTTGGTGGTGT
ACCTCTGATAACGAAGACGATCTCTTCTCCCTCGCCTTCTCCTCTTCCGG
CAGAGCCCGGCGGCGTTGGCGATGACACACCATCGCTGACGATCTTGAGC
CCTGCTCTAGAGAGCCCAAGTATCGCCGCGCCGACCGTGACCAGTCTGCT
GAGGGGTCCGTCCTTCGGCGCGCATGGGAATCGCCTACGCCGTTCTTCTC
TTTACGCGACGGATCAACTAATGGCGGCAGCAGAAACGGCGGCAGCAGAA
ATGGCGGCAGTGGCAGCGGTGGGAGGAACGATGGAAACGGAAGCGGAAGC
GAGAGCGACGATGGGAGCGAAAGCAACCGAAGTTAGGGCAGAAGAGCACC
GAAGCCGCAGGTACAAGAGGCGACGAGCGAGGTCGCTCCCCCCAACCTGG
GACAATGACAAGAAGCAGGGTTATCCACCCCGCGCTCCTCGAAGGCCGCG
GCTGGAGTCACGGCCCTGTATGCAAGGCGCCACGGCCGTGATCGAGAATC
TCGCACTGGACGAAGACTGCGCCGTAGAAGACGACGCGGCGTTAAATGCC
TGGCTACATGAGGTGGGAGAGAGGGTCGGACCGGGGGCCGGAGCGAGGTC
TTTGGGAGAA
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