mRNA_F-serratus_M_contig911.20541.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig911.20541.1
Unique NamemRNA_F-serratus_M_contig911.20541.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig911.20541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig911contigF-serratus_M_contig911:227283..227761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932652.321652-CDS-F-serratus_M_contig911:227282..2274971622932652.321652-CDS-F-serratus_M_contig911:227282..227497Fucus serratus maleCDSF-serratus_M_contig911 227283..227497 +
1690964405.1461787-CDS-F-serratus_M_contig911:227282..2274971690964405.1461787-CDS-F-serratus_M_contig911:227282..227497Fucus serratus maleCDSF-serratus_M_contig911 227283..227497 +
1622932652.3399904-CDS-F-serratus_M_contig911:227661..2277611622932652.3399904-CDS-F-serratus_M_contig911:227661..227761Fucus serratus maleCDSF-serratus_M_contig911 227662..227761 +
1690964405.157941-CDS-F-serratus_M_contig911:227661..2277611690964405.157941-CDS-F-serratus_M_contig911:227661..227761Fucus serratus maleCDSF-serratus_M_contig911 227662..227761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig911.20541.1prot_F-serratus_M_contig911.20541.1Fucus serratus malepolypeptideF-serratus_M_contig911 227283..227761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig911.20541.1

>prot_F-serratus_M_contig911.20541.1 ID=prot_F-serratus_M_contig911.20541.1|Name=mRNA_F-serratus_M_contig911.20541.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MHRYDCDVCEEPDDDAPLSDAKYRPCLQCPGDAGAGKRTADVDLSSTPKK
QKGKYKSLSVGGQDDTGVETSQSRNVCIHDKALFLGNRTRKFGLGETLDT
AKQPG
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mRNA from alignment at F-serratus_M_contig911:227283..227761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig911.20541.1 ID=mRNA_F-serratus_M_contig911.20541.1|Name=mRNA_F-serratus_M_contig911.20541.1|organism=Fucus serratus male|type=mRNA|length=479bp|location=Sequence derived from alignment at F-serratus_M_contig911:227283..227761+ (Fucus serratus male)
ATGCACCGATACGATTGCGACGTATGTGAAGAGCCGGACGATGATGCGCC
TCTGTCAGACGCGAAGTACCGCCCCTGCCTACAATGCCCTGGAGATGCTG
GTGCGGGCAAGCGCACCGCCGATGTTGACCTCAGTTCGACACCGAAGAAG
CAAAAAGGAAAATACAAGAGCCTCTCTGTCGGCGGCCAGGATGATACCGG
CGTGGAGACAAGCCAGTAAGTATGAGATTCAGGGTCTAGCAAAAACTCTT
TTTTTACAACCTCAGTCGATATTGATCGATATTGAGCAGTTGGCCGATTT
TTTTTATTCATCTATAACTCTGTAGTTTCGTTTATCCTTTCCTCGTGGTA
TCCTCTGCATGCATGTTCAATCAATGTAGGTCCAGAAACGTCTGCATTCA
CGACAAGGCGCTGTTCCTAGGGAACCGGACGCGGAAGTTTGGCCTCGGGG
AGACACTCGACACCGCGAAGCAGCCGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig911:227283..227761+

>mRNA_F-serratus_M_contig911.20541.1 ID=mRNA_F-serratus_M_contig911.20541.1|Name=mRNA_F-serratus_M_contig911.20541.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig911:227283..227761+ (Fucus serratus male)
ATGCACCGATACGATTGCGACGTATGTGAAGAGCCGGACGATGATGCGCC
TCTGTCAGACGCGAAGTACCGCCCCTGCCTACAATGCCCTGGAGATGCTG
GTGCGGGCAAGCGCACCGCCGATGTTGACCTCAGTTCGACACCGAAGAAG
CAAAAAGGAAAATACAAGAGCCTCTCTGTCGGCGGCCAGGATGATACCGG
CGTGGAGACAAGCCAATGCACCGATACGATTGCGACGTATGTGAAGAGCC
GGACGATGATGCGCCTCTGTCAGACGCGAAGTACCGCCCCTGCCTACAAT
GCCCTGGAGATGCTGGTGCGGGCAAGCGCACCGCCGATGTTGACCTCAGT
TCGACACCGAAGAAGCAAAAAGGAAAATACAAGAGCCTCTCTGTCGGCGG
CCAGGATGATACCGGCGTGGAGACAAGCCAGTCCAGAAACGTCTGCATTC
ACGACAAGGCGCTGTTCCTAGGGAACCGGACGCGGAAGTTTGGCCTCGGG
GAGACACTCGACACCGCGAAGCAGCCGGGGGTCCAGAAACGTCTGCATTC
ACGACAAGGCGCTGTTCCTAGGGAACCGGACGCGGAAGTTTGGCCTCGGG
GAGACACTCGACACCGCGAAGCAGCCGGGG
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