mRNA_F-serratus_M_contig91.20527.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: D7FNN3_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN3_ECTSI) HSP 1 Score: 184 bits (466), Expect = 5.840e-52 Identity = 110/206 (53.40%), Postives = 135/206 (65.53%), Query Frame = 2
Query: 23 VGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSRAKGGKSLCAGKRRKLITTAQRKSARA-------QSPGKGKQPKKASQSNK--GAKQDASEEASSGVSGCVRNPRDQWRGGKMEEDVEEEWRMSADQRARLSECEWLKAALRDLKLQSLLTEVDKADDRQESLAFHRTSKQFGEFMDKLLLEIGEYRKGEHDEPALVAAD 613
+ A+TC+VCK PSKYRCP C PYCS+ CNKAHK+ + G C GKR + + SP K+P+K +N+ G + S +A CVR RDQWRGG+ E+ EEEW+MSADQ R+S C WLKAA+RD LQ LLTE+D+ADDR+++LAFHRTS QFGEFMDK+LLEI EYRKG EP LVAAD
Sbjct: 4 IEAETCSVCKENPSKYRCPRCGAPYCSLVCNKAHKAGS-GSAPPCTGKRAGAPLSTPSPNGXXXXXXXXRHSPAGAKRPRKEEVANENGGVAVEGSNKA------CVRKGRDQWRGGR-EDKEEEEWQMSADQMERISGCAWLKAAVRDPILQKLLTEIDQADDREKALAFHRTSTQFGEFMDKMLLEIEEYRKGGTGEPELVAAD 201
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A835YLN6_9STRA (HIT-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.480e-15 Identity = 66/186 (35.48%), Postives = 90/186 (48.39%), Query Frame = 2
Query: 29 ADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSRAKGGKSL-----CAGKRRKLITTAQRKSARAQSPGKGKQPKKASQSNKGAKQDASEEASSGVSGCVRNPRDQWRGGKMEEDVEEE--WRMSADQRARLSECEWLKAALRDLKLQSLLTEVDKADDRQESLAFHRTSKQFGEFMDKLLLEIG 565
A C +C PSKYRC C YCSVAC K HK+ + G C GKR + A R +A +P A + + K E EEE W+++ RA+LS EWL+AALRD KLQ+L+ ++D A +R+ L FHRT+ +F MD++LLE+G
Sbjct: 16 AAICHICNQAPSKYRCAGCDARYCSVACFKTHKAGSTGENGTPVRPPCTGKRARAGDDAGRPAADNAAP--------AVRLQQXXXXXXXXXXXXXXXXXXXRSAVPVESVKKEAAQEEEAGWQLTDAHRAQLSGSEWLRAALRDPKLQTLILQIDGARNREAELRFHRTNPEFSALMDRILLEMG 193
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A2T7DEW8_9POAL (HIT-type domain-containing protein n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7DEW8_9POAL) HSP 1 Score: 57.0 bits (136), Expect = 2.940e-6 Identity = 51/177 (28.81%), Postives = 77/177 (43.50%), Query Frame = 2
Query: 23 VGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSRAKGGKSLCAGKRRKLITTAQRKSARAQSPGKGKQPKKASQSNKGAKQDASEEASSGVSGCVRNPRDQWRGGKMEEDVEEEWRMSADQRARLSECEWLKAALRDLKLQSLLTEVDKADDRQESLAFHRTSKQFGEFMDKLL 553
+G +C+VCK PSKY+CPSC PYCSV C K HK + C ++ L+ KS +E + SG V + G K D DQ LSE + ++ ALRD +LQ ++ ++D + + ++ L + F +F DK+L
Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKKHKEES------C---QKTLVQDENSKSPL-------------------------QEEVTRSSGLVED------GTKCPNDK--------DQHPSLSEVKEIRDALRDPELQKMILKIDGSSEPEKELEKVMEGQAFRQFTDKIL 129
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A068REM6_9FUNG (HIT-type domain-containing protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068REM6_9FUNG) HSP 1 Score: 55.8 bits (133), Expect = 7.750e-6 Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 2
Query: 35 TCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSR 133
TC +C+++PSKY+CP+C+ PYCS+AC K HK++
Sbjct: 3 TCQICQIEPSKYKCPTCTTPYCSIACFKQHKTQ 35
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A2T7DEX6_9POAL (HIT-type domain-containing protein n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7DEX6_9POAL) HSP 1 Score: 55.5 bits (132), Expect = 2.080e-5 Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 2
Query: 23 VGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSRA 136
+G +C+VCK PSKY+CPSC PYCSV C K HK +
Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKKHKEES 38
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A2N3NBD9_9PEZI (HIT-type domain-containing protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NBD9_9PEZI) HSP 1 Score: 56.6 bits (135), Expect = 2.320e-5 Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 2
Query: 38 CAVCKVKPSKYRCPSCSVPYCSVACNKAHK 127
CAVC P KY+CP C +PYCSVACNKAHK
Sbjct: 54 CAVCNTNPGKYKCPRCRMPYCSVACNKAHK 83
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A0A9L935_ARUDO (HIT-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9L935_ARUDO) HSP 1 Score: 54.7 bits (130), Expect = 2.500e-5 Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 2
Query: 23 VGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHK 127
+G +C+VCK PSKY+CPSC PYCSV C K HK
Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKNHK 35
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A368RCM1_SETIT (HIT-type domain-containing protein n=8 Tax=Setaria TaxID=4554 RepID=A0A368RCM1_SETIT) HSP 1 Score: 55.5 bits (132), Expect = 3.790e-5 Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 2
Query: 23 VGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKS 130
+G +C+VCK PSKY+CPSC PYCSV C K HK+
Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKKHKA 36
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: UPI0015C3EA39 (HIT zinc finger n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3EA39) HSP 1 Score: 55.1 bits (131), Expect = 5.250e-5 Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 2
Query: 29 ADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHK 127
+ TC VC+ PSKY+CP C +PYCSVACNK H+
Sbjct: 38 SSTCGVCEKNPSKYKCPRCYLPYCSVACNKIHR 70
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Match: A0A4Q7K3V8_METCM (HIT-type domain-containing protein n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A4Q7K3V8_METCM) HSP 1 Score: 55.1 bits (131), Expect = 7.490e-5 Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 2
Query: 26 GADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHK 127
G C VC+ PSKY+CP C +PYCSVACNK HK
Sbjct: 49 GVTICGVCEKTPSKYKCPRCYLPYCSVACNKIHK 82 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig91.20527.1 >prot_F-serratus_M_contig91.20527.1 ID=prot_F-serratus_M_contig91.20527.1|Name=mRNA_F-serratus_M_contig91.20527.1|organism=Fucus serratus male|type=polypeptide|length=201bp MGVGADTCAVCKVKPSKYRCPSCSVPYCSVACNKAHKSRAKGGKSLCAGKback to top mRNA from alignment at F-serratus_M_contig91:806847..811960- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig91.20527.1 ID=mRNA_F-serratus_M_contig91.20527.1|Name=mRNA_F-serratus_M_contig91.20527.1|organism=Fucus serratus male|type=mRNA|length=5114bp|location=Sequence derived from alignment at F-serratus_M_contig91:806847..811960- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig91:806847..811960- >mRNA_F-serratus_M_contig91.20527.1 ID=mRNA_F-serratus_M_contig91.20527.1|Name=mRNA_F-serratus_M_contig91.20527.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig91:806847..811960- (Fucus serratus male)back to top |