mRNA_F-serratus_M_contig91.20510.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20510.1
Unique NamemRNA_F-serratus_M_contig91.20510.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig91.20510.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.200e-30
Identity = 71/137 (51.82%), Postives = 100/137 (72.99%), Query Frame = 2 
Query:  308 QIAARAKAVVTRVRRNASKRADETKLKQNNLAVDLRSSMDALRSALQEEAKRATSLVEEQKEALKAAVGALDEKYDQAAEVQRQVKILVDCMHQHFRVVHAHIVVEIDGKVAETDEAVQKIHSQTENQTENTLTLIR 718
            +I+A+AKAV   VRRNASKR DE +  QN LA +LRS++ +L +AL+EE   A+ L+EEQ+ A+K AV +L EKY++AA+VQ +VK+L DCM QHF+VV +HIV ++  K+ +T+E V  IH Q +     TL+LIR
Sbjct:   16 EISAKAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDK----TLSLIR 148
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BLAST of mRNA_F-serratus_M_contig91.20510.1 vs. uniprot
Match: D8LNP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 8.850e-25
Identity = 60/111 (54.05%), Postives = 84/111 (75.68%), Query Frame = 2 
Query:  317 ARAKAVVTRVRRNASKRADETKLKQNNLAVDLRSSMDALRSALQEEAKRATSLVEEQKEALKAAVGALDEKYDQAAEVQRQVKILVDCMHQHFRVVHAHIVVEIDGKVAET 649
            ++AKAV   VRRNASKR DE +  QN LA +LRS++ +L +AL+EE   A++L+EEQ+  +K AV +L EKY++AA+VQ QVK+L DCM QHF+VV +HIV ++  K+ ET
Sbjct:   10 SKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLHAALEEEDHLASALMEEQERTMKEAVDSLSEKYEEAAKVQAQVKLLGDCMRQHFQVVRSHIVDQVGSKLTET 120
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6H0_9PHAE5.200e-3051.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP6_ECTSI8.850e-2554.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:377458..380959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006340.1
Exons7
Model size1213
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932647.0334823-UTR-F-serratus_M_contig91:377457..3779341622932647.0334823-UTR-F-serratus_M_contig91:377457..377934Fucus serratus maleUTRF-serratus_M_contig91 377458..377934 -
1690964402.6905088-UTR-F-serratus_M_contig91:377457..3779341690964402.6905088-UTR-F-serratus_M_contig91:377457..377934Fucus serratus maleUTRF-serratus_M_contig91 377458..377934 -
1622932647.173884-UTR-F-serratus_M_contig91:380904..3809591622932647.173884-UTR-F-serratus_M_contig91:380904..380959Fucus serratus maleUTRF-serratus_M_contig91 380905..380959 -
1690964402.8108447-UTR-F-serratus_M_contig91:380904..3809591690964402.8108447-UTR-F-serratus_M_contig91:380904..380959Fucus serratus maleUTRF-serratus_M_contig91 380905..380959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932647.0524004-CDS-F-serratus_M_contig91:377934..3780201622932647.0524004-CDS-F-serratus_M_contig91:377934..378020Fucus serratus maleCDSF-serratus_M_contig91 377935..378020 -
1690964402.7087584-CDS-F-serratus_M_contig91:377934..3780201690964402.7087584-CDS-F-serratus_M_contig91:377934..378020Fucus serratus maleCDSF-serratus_M_contig91 377935..378020 -
1622932647.0711696-CDS-F-serratus_M_contig91:378338..3784621622932647.0711696-CDS-F-serratus_M_contig91:378338..378462Fucus serratus maleCDSF-serratus_M_contig91 378339..378462 -
1690964402.7278523-CDS-F-serratus_M_contig91:378338..3784621690964402.7278523-CDS-F-serratus_M_contig91:378338..378462Fucus serratus maleCDSF-serratus_M_contig91 378339..378462 -
1622932647.0870469-CDS-F-serratus_M_contig91:379003..3791151622932647.0870469-CDS-F-serratus_M_contig91:379003..379115Fucus serratus maleCDSF-serratus_M_contig91 379004..379115 -
1690964402.7412527-CDS-F-serratus_M_contig91:379003..3791151690964402.7412527-CDS-F-serratus_M_contig91:379003..379115Fucus serratus maleCDSF-serratus_M_contig91 379004..379115 -
1622932647.102919-CDS-F-serratus_M_contig91:379355..3794521622932647.102919-CDS-F-serratus_M_contig91:379355..379452Fucus serratus maleCDSF-serratus_M_contig91 379356..379452 -
1690964402.7564907-CDS-F-serratus_M_contig91:379355..3794521690964402.7564907-CDS-F-serratus_M_contig91:379355..379452Fucus serratus maleCDSF-serratus_M_contig91 379356..379452 -
1622932647.121223-CDS-F-serratus_M_contig91:379939..3800151622932647.121223-CDS-F-serratus_M_contig91:379939..380015Fucus serratus maleCDSF-serratus_M_contig91 379940..380015 -
1690964402.770368-CDS-F-serratus_M_contig91:379939..3800151690964402.770368-CDS-F-serratus_M_contig91:379939..380015Fucus serratus maleCDSF-serratus_M_contig91 379940..380015 -
1622932647.1388938-CDS-F-serratus_M_contig91:380323..3804951622932647.1388938-CDS-F-serratus_M_contig91:380323..380495Fucus serratus maleCDSF-serratus_M_contig91 380324..380495 -
1690964402.7847354-CDS-F-serratus_M_contig91:380323..3804951690964402.7847354-CDS-F-serratus_M_contig91:380323..380495Fucus serratus maleCDSF-serratus_M_contig91 380324..380495 -
1622932647.1559217-CDS-F-serratus_M_contig91:380890..3809041622932647.1559217-CDS-F-serratus_M_contig91:380890..380904Fucus serratus maleCDSF-serratus_M_contig91 380891..380904 -
1690964402.7973595-CDS-F-serratus_M_contig91:380890..3809041690964402.7973595-CDS-F-serratus_M_contig91:380890..380904Fucus serratus maleCDSF-serratus_M_contig91 380891..380904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20510.1prot_F-serratus_M_contig91.20510.1Fucus serratus malepolypeptideF-serratus_M_contig91 377935..380904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20510.1

>prot_F-serratus_M_contig91.20510.1 ID=prot_F-serratus_M_contig91.20510.1|Name=mRNA_F-serratus_M_contig91.20510.1|organism=Fucus serratus male|type=polypeptide|length=227bp
MKLPSLPLPILSHQQQRSGGSSSGDPPIALPELDLGCIGKKPAKKETTVV
AEDDEDPREEAQMIQLLQQVQMLKQKKESKRKREQIAARAKAVVTRVRRN
ASKRADETKLKQNNLAVDLRSSMDALRSALQEEAKRATSLVEEQKEALKA
AVGALDEKYDQAAEVQRQVKILVDCMHQHFRVVHAHIVVEIDGKVAETDE
AVQKIHSQTENQTENTLTLIRGKSMA*
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mRNA from alignment at F-serratus_M_contig91:377458..380959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20510.1 ID=mRNA_F-serratus_M_contig91.20510.1|Name=mRNA_F-serratus_M_contig91.20510.1|organism=Fucus serratus male|type=mRNA|length=3502bp|location=Sequence derived from alignment at F-serratus_M_contig91:377458..380959- (Fucus serratus male)
GCCGGATTCGCACAGTTTATCGCAGCTGGTTCTTCCGGCAGAGTCTCCTG
CCAACATGAAGCTGCCTAGGTCAGCGACATCCATTCATGCTCATTTCAAA
ATGCTTTTATTTTATCTTCATTCAAGATCCGAAGCAAAATCAACCTTGAC
AAGAGGACCGTTATGATCCCCTCGTTGTTGGGAGCCCAACCAAGATGCCG
TACATATATTGATACCGTACGGGAGTAGAGCTAGTCCTTGCTGTAGACTT
CACATGTCCGTACATATGTATACTTCGAAGTCCTGCCCTTGAGGTTCGCC
GCTGCCGAGTTGACCTCTGTAACTTCTCAGTCTGTATAAATCCTGGTGCG
GTGCGCTCCTCCTGATCATGGTCAGTCAGCACAGAACAAGTTCTTGTTCG
AACAGTATTCAAATTCAAATATGCAAATCCTGTGCTTGTGATATCGTGCC
TGGAGGACGGACAGTCTTCCACTTCCTATCCTGAGCCATCAACAACAACG
CAGTGGGGGGTCTAGCTCTGGCGACCCTCCGATTGCGCTCCCCGAGTTAG
ATCTAGGATGCATTGGCAAAAAACCCGCCAAGAAGGAGACGACGGTGGTG
GCTGAGGATGATGAGGATCCCCGCGAGGAAGCCCAGGTTAAATTAGGAAG
CCCAGGACGGCAGTGACATTATTATGTTTTGAAGTACTGTACTGTACTCG
TCAATTTACAAAATGCTACTTGACTTGTGATCATGTATTAGAGTGTCCCG
GAGGCCGACAGCTGAGGCTTGAGGCTCTGTTTACGGTCGAGTATACCGAA
GCTCCTGGGAACTGTCAGCTGTGACTTGTTTTACTTTGCTCAGGGTATAG
TTTCGTGAATGCGCGGTGCTGCAATGGTGATGTATTTTCGCGATTTCTCA
ATCATCGATGGCGCCCCTGTCCTCCGCTTCATCCCCGGCTGCAGATGATC
CAATTGCTGCAACAGGTGCAGATGTTGAAGCAGAAGAAGGAGAGCAAGCG
CAAACGAGAACAGATCGCAGGTAATTCTGTGCTATAGCAAGCAGGAGTAA
TACAGCTGCGGTCGCTAAAGCCAGTCTCTACGCCCGTCGAAAGTGATTGC
GTTTAGTGTACAACCATACACCAGTAAAGCTCTCACAGGTGGATTGTACA
CGCCGCAGGTAAATAGTATACGTTGTATGATTAACAGAACCAACAATTCA
TGTCAACCATGGGAATAACTGCTCAAACGGACGTACTCTGCAGAAGACGT
GGCGTGCGAAACCCAACGAGTAACGTGTTTGTCATGCGATTAGTCTTGCT
ACTGCGGGATTACGCCGTTTCAAAACATAGTAGTCCCGCTGCTCCTCTGT
TTGGAGCAGTCTCTCGACCACGATATTTGAAGTTACCTGGTAATATTTTC
AGTTTCGGGCGTCGCCTATGCTATACACTCCGTATACGGGTTGTCGTCGA
CAAGCTCTGTTTTTTTGTTTGTTTCTTATTTCTGACGATCCCGCGGCGAT
GCTTTAGCGAGGGCGAAGGCGGTGGTCACAAGGGTGCGAAGGAACGCCTC
AAAGCGAGCGGACGAGACCAAGTTGAAACAAAACAACCTCGCCGTTGATC
TCAGGCAAGCGGGGACGGTTTCGGAATGAATGCCGCTATCATCGGGATTG
ATGTTTTACACCTGTTAATAGTCCCATTACTCTCTCAAATCCACTACAGT
ACAGCACGTCACAGATGGTTTCCCTTCCATTGAATTTCGTTGAACTCCGT
CATTGGCAATACGCTGCGGGTGTAACGGCGATCGACGGCGTCCCCAAAAC
GAACTCGTGCTAAACGCGCGAACTGTCCTCAAGGTGCCTCACAGGTCCTC
GATGGACGCGTTGCGCTCTGCTCTCCAAGAGGAGGCTAAGCGAGCCACGT
CTCTTGTGGAGGAACAGAAGGAGGCATTGAAAGCCGCAGTGGGCGCCCTC
GATGAAGTGAGCAGCAACGAAACTGTTAGGGCATGCAGCTGTGCGACTGT
GATTTTAATGCTGAGACCACCGCTATAAATTAAGCTCCGCACCATTTACG
CCAATCAGCGCTGGAAAGTCTGCGTGTTGACACAATGTTTCTAGCAAAAG
CTGAATCGGGGTTCGATAGACCCTAATGTTACACCAGCCCGCAAATTCCG
TTATCAGCGCTTCCATCCGCATTATCAGCACGTCTTTCTCATCAGTTACC
ACCCCAAGCCGTTCCATACGCGAATCAGACACAACATTGTTGATATACTG
TGACTGTTGTTCCCATCCTGCTACTCCTGTACTTGAGGGTATTTTTCTGA
CGAAACTGAAAAAAACTACGTACCCGGTAATGAGGATCGCAAGAATTCGA
ACCCTAGACTTGGCATCTGCCCGGTGCAACACGCTACCACTCGCAAGAGT
GACGTTTGCGGGGGTTGGCTGATACTCAGCCGCGGTGCCTATACCCGTTC
TTAAGCACCCTGTCGATATGGATGGTTTCGTCGGTGCTCGTGCGCAGAAG
TATGACCAGGCTGCCGAGGTTCAAAGGCAGGTGAAGATCCTGGTTGACTG
CATGCACCAGCATTTTCGCGTTGTACACGCCCACATCGTGGTGGAGATTG
ACGGCAAGGTCGCGGAGACAGGTGAGAGCGTATGCCAAGGTTCCCCTTAC
TTTTGACCTTTGTGTCGAGCTTAGCCGATTCGAACGCGACAACGGAGTTA
CTCTTTCTCAAAGCTCAGCGTGTGTTCGCGTATGTGTTGTTCATCAATAA
ACTCTCGACCTCCGGCGATTCTGCGTGACAGAAGTAACCAGGGGAATGCT
ACCCCCAGAAGACTTTGGTTTGAAGTCTAAATCACTCGCATGTTATGCAC
TAGGTAAATCATTCCAGACTTATGAATCTCTTCTGCGTCATTTCTGAGTT
TCATCGCCTCGCTGCGTCACGTATATTTTCGCCTTACAGACGAAGCGGTT
CAAAAGATACACAGCCAAACGGAAAACCAAACTGAGAACACTCTCACTCT
CATCCGTGGGAAGAGCATGGCGTAGCATGACGTGGTTGGACCAAGCCAAA
GAACCCCGTGCAATCTCCGACCTCTACGGAGGAACATGCAATCGCAGTCA
AAGCGTGGGGAGAGGAAGAACTGGGATTTCCGTCGCCCTGAATAAGATCC
ATTCACTTGTAGAAACCCCGGAGCGTGCTTGGGGATGCAGCGCTCGAATT
TGCCAGCGAGATTCACGGGGCATTACTCGGATTTCGGGCACTGTGTGTTT
ACCGGCTGCATTTTTCCCCCTTTTCACTTGTTATAGTGGCTGGAAAGGGT
AATGGCTCATGCGTGTGCGTGTGCGTGTTCATTCTGTATACTGTTTACAC
GTGGCAGAGGTCCACGAGACATGTTTTTTGGAGGAGTACCTGTCGTCAAG
TCTACATCCGAGATCATGCGTAGCGTCCATCGTGTTTATAATAATGTTTC
AAAAATTATCATAAATTAAGGCACTCCCGTCCCGACTTGATTTCACTTGT
TT
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:377458..380959-

>mRNA_F-serratus_M_contig91.20510.1 ID=mRNA_F-serratus_M_contig91.20510.1|Name=mRNA_F-serratus_M_contig91.20510.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig91:377458..380959- (Fucus serratus male)
ATGAAGCTGCCTAGATGAAGCTGCCTAGTCTTCCACTTCCTATCCTGAGC
CATCAACAACAACGCAGTGGGGGGTCTAGCTCTGGCGACCCTCCGATTGC
GCTCCCCGAGTTAGATCTAGGATGCATTGGCAAAAAACCCGCCAAGAAGG
AGACGACGGTGGTGGCTGAGGATGATGAGGATCCCCGCGAGGAAGCCCAG
TCTTCCACTTCCTATCCTGAGCCATCAACAACAACGCAGTGGGGGGTCTA
GCTCTGGCGACCCTCCGATTGCGCTCCCCGAGTTAGATCTAGGATGCATT
GGCAAAAAACCCGCCAAGAAGGAGACGACGGTGGTGGCTGAGGATGATGA
GGATCCCCGCGAGGAAGCCCAGATGATCCAATTGCTGCAACAGGTGCAGA
TGTTGAAGCAGAAGAAGGAGAGCAAGCGCAAACGAGAACAGATCGCAGAT
GATCCAATTGCTGCAACAGGTGCAGATGTTGAAGCAGAAGAAGGAGAGCA
AGCGCAAACGAGAACAGATCGCAGCGAGGGCGAAGGCGGTGGTCACAAGG
GTGCGAAGGAACGCCTCAAAGCGAGCGGACGAGACCAAGTTGAAACAAAA
CAACCTCGCCGTTGATCTCAGCGAGGGCGAAGGCGGTGGTCACAAGGGTG
CGAAGGAACGCCTCAAAGCGAGCGGACGAGACCAAGTTGAAACAAAACAA
CCTCGCCGTTGATCTCAGGTCCTCGATGGACGCGTTGCGCTCTGCTCTCC
AAGAGGAGGCTAAGCGAGCCACGTCTCTTGTGGAGGAACAGAAGGAGGCA
TTGAAAGCCGCAGTGGGCGCCCTCGATGAAGTCCTCGATGGACGCGTTGC
GCTCTGCTCTCCAAGAGGAGGCTAAGCGAGCCACGTCTCTTGTGGAGGAA
CAGAAGGAGGCATTGAAAGCCGCAGTGGGCGCCCTCGATGAAAAGTATGA
CCAGGCTGCCGAGGTTCAAAGGCAGGTGAAGATCCTGGTTGACTGCATGC
ACCAGCATTTTCGCGTTGTACACGCCCACATCGTGGTGGAGATTGACGGC
AAGGTCGCGGAGACAGAAGTATGACCAGGCTGCCGAGGTTCAAAGGCAGG
TGAAGATCCTGGTTGACTGCATGCACCAGCATTTTCGCGTTGTACACGCC
CACATCGTGGTGGAGATTGACGGCAAGGTCGCGGAGACAGACGAAGCGGT
TCAAAAGATACACAGCCAAACGGAAAACCAAACTGAGAACACTCTCACTC
TCATCCGTGGGAAGAGCATGGCGTAGACGAAGCGGTTCAAAAGATACACA
GCCAAACGGAAAACCAAACTGAGAACACTCTCACTCTCATCCGTGGGAAG
AGCATGGCGTAG
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