mRNA_F-serratus_M_contig1279.2058.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1279.2058.1
Unique NamemRNA_F-serratus_M_contig1279.2058.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1279.2058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1279contigF-serratus_M_contig1279:209719..210520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1279.2058.1prot_F-serratus_M_contig1279.2058.1Fucus serratus malepolypeptideF-serratus_M_contig1279 209820..210500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.1161098-UTR-F-serratus_M_contig1279:209718..2098191622929211.1161098-UTR-F-serratus_M_contig1279:209718..209819Fucus serratus maleUTRF-serratus_M_contig1279 209719..209819 -
1690962751.9760368-UTR-F-serratus_M_contig1279:209718..2098191690962751.9760368-UTR-F-serratus_M_contig1279:209718..209819Fucus serratus maleUTRF-serratus_M_contig1279 209719..209819 -
1622929211.3091426-UTR-F-serratus_M_contig1279:210500..2105201622929211.3091426-UTR-F-serratus_M_contig1279:210500..210520Fucus serratus maleUTRF-serratus_M_contig1279 210501..210520 -
1690962752.0044332-UTR-F-serratus_M_contig1279:210500..2105201690962752.0044332-UTR-F-serratus_M_contig1279:210500..210520Fucus serratus maleUTRF-serratus_M_contig1279 210501..210520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.266895-CDS-F-serratus_M_contig1279:209819..2099001622929211.266895-CDS-F-serratus_M_contig1279:209819..209900Fucus serratus maleCDSF-serratus_M_contig1279 209820..209900 -
1690962751.9856858-CDS-F-serratus_M_contig1279:209819..2099001690962751.9856858-CDS-F-serratus_M_contig1279:209819..209900Fucus serratus maleCDSF-serratus_M_contig1279 209820..209900 -
1622929211.2921777-CDS-F-serratus_M_contig1279:210440..2105001622929211.2921777-CDS-F-serratus_M_contig1279:210440..210500Fucus serratus maleCDSF-serratus_M_contig1279 210441..210500 -
1690962751.9948099-CDS-F-serratus_M_contig1279:210440..2105001690962751.9948099-CDS-F-serratus_M_contig1279:210440..210500Fucus serratus maleCDSF-serratus_M_contig1279 210441..210500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1279.2058.1

>prot_F-serratus_M_contig1279.2058.1 ID=prot_F-serratus_M_contig1279.2058.1|Name=mRNA_F-serratus_M_contig1279.2058.1|organism=Fucus serratus male|type=polypeptide|length=47bp
MAALRYSPRLTLTRDTVENKVSSPHKSPFFVASEHLDKDIYENTDG*
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mRNA from alignment at F-serratus_M_contig1279:209719..210520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1279.2058.1 ID=mRNA_F-serratus_M_contig1279.2058.1|Name=mRNA_F-serratus_M_contig1279.2058.1|organism=Fucus serratus male|type=mRNA|length=802bp|location=Sequence derived from alignment at F-serratus_M_contig1279:209719..210520- (Fucus serratus male)
GTCGGGGGTCGGGGCCGCCGATGGCGGCGTTGAGATATTCCCCTCGTCTG
ACGTTAACACGAGATACAGTAGAGAACAAGGTACACCGTTCCGAGCGCAC
AGTACAGTAGTTAGTGACTGCATCCGTTCGGCGAATCGACAAAATTGATC
GGTAAGCAATGGTAAATAACAGCATATCGGTCAATTCGCAAGGCCTGTAC
AATCTCTCTGGTGCCTTGATGTACTAATGACTCGCACGAGATGGCGAACA
GGTGTTGCGGGGAGAGTATATACGTTAACCGTTTTACCGGTTTCGATGAC
GCAAGGCGCTGCCCCCTTGTCTGCACAAAGTTCGTTGTTCTCAAGAATAT
TGGACGTGCAGCAATCGTCCTCCGAGTACCCCTCGATGCTGGAGCAACCC
GTATCGCCGCACTGTCCACAGTCCTCTACGCAGCAGACGCCCGACGATTC
GATCCCAGGAAAGCCATTGCTGCAAAACAAACCTGGAAGAGATAGTATAA
ATGAATAGAGCTATATGCAATTAGTAAGGGGCGAGCACGCTACGCATACC
TTGCATGGGCGGAGCAGCTACACCGTACCAACGAATCATCCACAACGTGA
ATCCGTTTTGCCATCTTCAGGTATCTTCTCCGCACAAGTCCCCCTTCTTC
GTCGCAAGCGAACATCTTGACAAGGATATATATGAAAACACCGACGGTTA
AGGTAACGCGGCGATCCTACCTTGTCCCGAAGCGTGACCAGCGAGATGCA
GCAGAATGAAGATTGCAACGACAGCCCAACAAGCCCTCAAACGCGAGGCC
AT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1279:209719..210520-

>mRNA_F-serratus_M_contig1279.2058.1 ID=mRNA_F-serratus_M_contig1279.2058.1|Name=mRNA_F-serratus_M_contig1279.2058.1|organism=Fucus serratus male|type=CDS|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig1279:209719..210520- (Fucus serratus male)
ATGGCGGCGTTGAGATATTCCCCTCGTCTGACGTTAACACGAGATACAGT
AGAGAACAAGATGGCGGCGTTGAGATATTCCCCTCGTCTGACGTTAACAC
GAGATACAGTAGAGAACAAGGTATCTTCTCCGCACAAGTCCCCCTTCTTC
GTCGCAAGCGAACATCTTGACAAGGATATATATGAAAACACCGACGGTTA
AGTATCTTCTCCGCACAAGTCCCCCTTCTTCGTCGCAAGCGAACATCTTG
ACAAGGATATATATGAAAACACCGACGGTTAA
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