mRNA_F-serratus_M_contig91.20524.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20524.1
Unique NamemRNA_F-serratus_M_contig91.20524.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:761905..762784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size868
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20524.1prot_F-serratus_M_contig91.20524.1Fucus serratus malepolypeptideF-serratus_M_contig91 762137..762784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932644.0462277-UTR-F-serratus_M_contig91:761904..7621361622932644.0462277-UTR-F-serratus_M_contig91:761904..762136Fucus serratus maleUTRF-serratus_M_contig91 761905..762136 +
1690964401.2984412-UTR-F-serratus_M_contig91:761904..7621361690964401.2984412-UTR-F-serratus_M_contig91:761904..762136Fucus serratus maleUTRF-serratus_M_contig91 761905..762136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932644.0714602-CDS-F-serratus_M_contig91:762136..7621991622932644.0714602-CDS-F-serratus_M_contig91:762136..762199Fucus serratus maleCDSF-serratus_M_contig91 762137..762199 +
1690964401.3089676-CDS-F-serratus_M_contig91:762136..7621991690964401.3089676-CDS-F-serratus_M_contig91:762136..762199Fucus serratus maleCDSF-serratus_M_contig91 762137..762199 +
1622932644.0967164-CDS-F-serratus_M_contig91:762211..7627841622932644.0967164-CDS-F-serratus_M_contig91:762211..762784Fucus serratus maleCDSF-serratus_M_contig91 762212..762784 +
1690964401.3270986-CDS-F-serratus_M_contig91:762211..7627841690964401.3270986-CDS-F-serratus_M_contig91:762211..762784Fucus serratus maleCDSF-serratus_M_contig91 762212..762784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20524.1

>prot_F-serratus_M_contig91.20524.1 ID=prot_F-serratus_M_contig91.20524.1|Name=mRNA_F-serratus_M_contig91.20524.1|organism=Fucus serratus male|type=polypeptide|length=212bp
MWKEEEEEMRRSSTGGPVNMHSPIVAAEIDFFSATRRAWGPPQPQQQQLQ
IGFDRKEREEMARRVATKGTTVSAVGSMWSRGISTGADLEQDSPYVSRGI
VPRHPAECSPSDYIIWEQRFEFFLAEQGLRHTISPDAPEIAVISCPDNAY
LFGQFGADLVTDHRLAWWYISEATADTAFEDCLYTCHSISDALRIMRGWS
LPLYPVERPLLM
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mRNA from alignment at F-serratus_M_contig91:761905..762784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20524.1 ID=mRNA_F-serratus_M_contig91.20524.1|Name=mRNA_F-serratus_M_contig91.20524.1|organism=Fucus serratus male|type=mRNA|length=880bp|location=Sequence derived from alignment at F-serratus_M_contig91:761905..762784+ (Fucus serratus male)
CAGGCGTGTTAACAGTGACCACGCGCCGGAATTCCTAACACGATATATCG
AGATCGGCTCTGCAGAGCGCCCGGTTCAGATGTCAAGTGAGGATGACCTG
AGGAAGCAGGTGAATTGATTGAAGAAGAAGATGGAAGAAGCAGACGAGAG
AGAGAAAAGGAGAGAAGAAGTGATGAAGATGTTGAAGCAAGAAGAAGAGA
GAAAACAGAAGTGGAAATAATCGAGGAAAGTGATGTGGAAAGAAGAGGAA
GAGGAGATGAGGAGATCGAGTACTGGAGGGCCAGTTAATATGCATGTCGA
TCGACAGTCACCAATCGTGGCGGCAGAGATCGATTTTTTTTCGGCAACGC
GCAGGGCGTGGGGCCCTCCGCAACCGCAACAGCAGCAGCTGCAGATAGGT
TTTGATAGGAAGGAAAGGGAGGAGATGGCGAGAAGGGTAGCCACAAAAGG
GACTACTGTGTCCGCTGTGGGCTCCATGTGGTCACGTGGGATAAGTACCG
GTGCTGATTTGGAGCAAGATTCACCGTATGTTTCCCGGGGTATTGTACCA
AGACACCCCGCGGAATGTTCTCCATCCGACTACATCATCTGGGAGCAACG
TTTTGAGTTTTTTTTAGCTGAACAGGGACTACGTCATACTATCTCCCCCG
ACGCTCCTGAAATAGCTGTGATCAGCTGCCCAGACAACGCATACCTCTTT
GGCCAGTTTGGCGCGGACCTTGTCACGGACCACAGACTGGCATGGTGGTA
TATTTCCGAAGCGACTGCTGATACTGCCTTTGAGGATTGTCTGTACACGT
GTCACTCCATTTCGGATGCCTTGAGGATAATGAGGGGGTGGTCGTTGCCC
CTTTATCCAGTCGAGCGGCCTTTGCTTATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:761905..762784+

>mRNA_F-serratus_M_contig91.20524.1 ID=mRNA_F-serratus_M_contig91.20524.1|Name=mRNA_F-serratus_M_contig91.20524.1|organism=Fucus serratus male|type=CDS|length=1272bp|location=Sequence derived from alignment at F-serratus_M_contig91:761905..762784+ (Fucus serratus male)
ATGTGGAAAGAAGAGGAAGAGGAGATGAGGAGATCGAGTACTGGAGGGCC
AGTTAATATGCATATGTGGAAAGAAGAGGAAGAGGAGATGAGGAGATCGA
GTACTGGAGGGCCAGTTAATATGCATTCACCAATCGTGGCGGCAGAGATC
GATTTTTTTTCGGCAACGCGCAGGGCGTGGGGCCCTCCGCAACCGCAACA
GCAGCAGCTGCAGATAGGTTTTGATAGGAAGGAAAGGGAGGAGATGGCGA
GAAGGGTAGCCACAAAAGGGACTACTGTGTCCGCTGTGGGCTCCATGTGG
TCACGTGGGATAAGTACCGGTGCTGATTTGGAGCAAGATTCACCGTATGT
TTCCCGGGGTATTGTACCAAGACACCCCGCGGAATGTTCTCCATCCGACT
ACATCATCTGGGAGCAACGTTTTGAGTTTTTTTTAGCTGAACAGGGACTA
CGTCATACTATCTCCCCCGACGCTCCTGAAATAGCTGTGATCAGCTGCCC
AGACAACGCATACCTCTTTGGCCAGTTTGGCGCGGACCTTGTCACGGACC
ACAGACTGGCATGGTGGTATATTTCCGAAGCGACTGCTGATACTGCCTTT
GAGGATTGTCTGTACACGTGTCACTCCATTTCGGATGCCTTGAGGATAAT
GAGGGGGTGGTCGTTGCCCCTTTATCCAGTCGAGCGGCCTTTGCTTATGT
CACCAATCGTGGCGGCAGAGATCGATTTTTTTTCGGCAACGCGCAGGGCG
TGGGGCCCTCCGCAACCGCAACAGCAGCAGCTGCAGATAGGTTTTGATAG
GAAGGAAAGGGAGGAGATGGCGAGAAGGGTAGCCACAAAAGGGACTACTG
TGTCCGCTGTGGGCTCCATGTGGTCACGTGGGATAAGTACCGGTGCTGAT
TTGGAGCAAGATTCACCGTATGTTTCCCGGGGTATTGTACCAAGACACCC
CGCGGAATGTTCTCCATCCGACTACATCATCTGGGAGCAACGTTTTGAGT
TTTTTTTAGCTGAACAGGGACTACGTCATACTATCTCCCCCGACGCTCCT
GAAATAGCTGTGATCAGCTGCCCAGACAACGCATACCTCTTTGGCCAGTT
TGGCGCGGACCTTGTCACGGACCACAGACTGGCATGGTGGTATATTTCCG
AAGCGACTGCTGATACTGCCTTTGAGGATTGTCTGTACACGTGTCACTCC
ATTTCGGATGCCTTGAGGATAATGAGGGGGTGGTCGTTGCCCCTTTATCC
AGTCGAGCGGCCTTTGCTTATG
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