mRNA_F-serratus_M_contig909.20493.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig909.20493.1
Unique NamemRNA_F-serratus_M_contig909.20493.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: A0A6H5KF29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF29_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.010e-26
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 1 
Query:   85 PRETCQPGDRQKGPSRVD-GSKPTILCEYYREDSMPSVHHQDMSCCREGCDREAKAGPKSRPGEIYLFCSGHQSPAVIATRTEHCQFVGCWN------------TPKYGQRQGPLSFCQLHKRAGMYTNRNGQLLVATRDGSAYKDEDG 492
            P E CQ     + PS  D G +P + C  +R+D M  V H   +C  +GC+ EA      R G I+ FC+ H+ P V+  +   C+   C              TP+YG   GPL+FC+ HKRAGMYT R+G L VATRDG A++ + G
Sbjct:   28 PGEYCQVKHCGERPSYSDDGYEPAVRCRDHRKDGMLRVQHDHKTCGADGCNGEADVHYMGRDGRIHRFCARHKEPVVVLEQAVQCEVFHCCGFDGKDMHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGMLYVATRDGIAFRKDPG 176
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.100e-21
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  208 MSCCREGCDREAKAGPKSRPGEIYLFCSGHQSPAVIATRTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYTNRNGQLLVATRDGSAYKDEDG 492
            M+   + C  EA      R G I+ FC+ H+ P V+  +   CQ   C  TP+YG   GPL+FC+ HKRAGMYT R+G L VATRDGSA++ + G
Sbjct:   40 MTATSQQCTEEADVHYMGRDGRIHRFCTRHKEPVVVLEQAVQCQHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVATRDGSAFRKDPG 134
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.710e-18
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:  178 DSMPSVHHQDMSCCREG--------CDREAKAGPKSRPGEIYLFCSGHQSPAVIATRTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYTNRNGQLLVATRDGSAYKDEDGAAA 501
            ++ P   H+D     +G        C+R  +     + G +            +A+RTE+C+  GC  TP+YG++ GPL+ CQ HKRAG+YT R+G LLVATRDGSA++++ G+++
Sbjct:  124 ETRPPNGHEDGLPVEDGPETRGLARCERGVEESRLPQDGGVISPPRTEDKKPAVASRTEYCKHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVATRDGSAFREKAGSSS 239
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: A0A6H5JZ47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ47_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.900e-16
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:  241 AKAGPKSRPGEIYLFCSGHQSPAV-IAT--RTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYTNRNGQLLVATRDGSAYKDEDGAAA 501
            A+    S+ G I+  C   + PA  +AT  R + C++ GC  TP+YG R G  SFCQ HKRAGMYT R+G+L +ATRDG  ++   G  A
Sbjct:   70 AEDNQTSQDGLIHRVCVEDKGPAQSVATMRRAQRCEYAGCDGTPRYGPRNGLQSFCQGHKRAGMYTYRSGELFMATRDGRVFRKAAGPTA 159
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: A0A6H5KL62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL62_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.170e-15
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:  226 GCDREAKAGPKSRPGEIYLFCSGHQSPAVIATRTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYTNRNGQLLVATRDGSAYKDE 486
            GC+R  +     + G +            + +RTE+C+  GC+   +YG++ GPL  CQ HKRAG+YT R+G LLVATRDGS    E
Sbjct:  141 GCERGVEENRLVQDGGVISPPRTEDKKLAVTSRTEYCKHAGCFRALRYGRKNGPLMLCQSHKRAGLYTVRDGVLLVATRDGSGRSSE 227
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.200e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  310 VIATRTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYT-NRNGQLLVATRDGSAYK 480
            ++A +   C++ GC    KYG R  P S CQ HKRAG YT NR+G+LL+ATRDG A++
Sbjct:   53 LLAPKAPRCEYPGCPKYAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFR 110
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BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.790e-9
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  301 SPAVIATRTE-HCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYT-NRNGQLLVATRDGSAYK 480
            SP  +   T   C++ GC  + KYG R  P S CQ HKRAG YT NR+G+LL+ATRDG A++
Sbjct:   49 SPKTLQAPTAPRCEYPGCPKSAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFR 110
[Close]
BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.000e-9
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  322 RTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYT-NRNGQLLVATRDGSAYK 480
            +   C++ GC  + KYG R+ P S CQ HKRAG YT NR+G+LL+ATRDG A++
Sbjct:  111 KAPRCEYPGCPKSAKYGLREAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFR 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig909.20493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KF29_9PHAE2.010e-2638.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH38_ECTSI3.100e-2146.32EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G084_ECTSI2.710e-1837.07Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JZ47_9PHAE2.900e-1645.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL62_9PHAE3.170e-1541.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGW8_ECTSI7.200e-1051.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYF0_9PHAE1.790e-951.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLI4_9PHAE2.000e-953.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig909contigF-serratus_M_contig909:241087..243272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size629
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig909.20493.1prot_F-serratus_M_contig909.20493.1Fucus serratus malepolypeptideF-serratus_M_contig909 241089..243272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932643.4715772-CDS-F-serratus_M_contig909:241088..2411471622932643.4715772-CDS-F-serratus_M_contig909:241088..241147Fucus serratus maleCDSF-serratus_M_contig909 241089..241147 -
1690964401.0517206-CDS-F-serratus_M_contig909:241088..2411471690964401.0517206-CDS-F-serratus_M_contig909:241088..241147Fucus serratus maleCDSF-serratus_M_contig909 241089..241147 -
1622932643.488267-CDS-F-serratus_M_contig909:241404..2415001622932643.488267-CDS-F-serratus_M_contig909:241404..241500Fucus serratus maleCDSF-serratus_M_contig909 241405..241500 -
1690964401.0722349-CDS-F-serratus_M_contig909:241404..2415001690964401.0722349-CDS-F-serratus_M_contig909:241404..241500Fucus serratus maleCDSF-serratus_M_contig909 241405..241500 -
1622932643.522745-CDS-F-serratus_M_contig909:241813..2419461622932643.522745-CDS-F-serratus_M_contig909:241813..241946Fucus serratus maleCDSF-serratus_M_contig909 241814..241946 -
1690964401.0903826-CDS-F-serratus_M_contig909:241813..2419461690964401.0903826-CDS-F-serratus_M_contig909:241813..241946Fucus serratus maleCDSF-serratus_M_contig909 241814..241946 -
1622932643.5379446-CDS-F-serratus_M_contig909:242185..2422971622932643.5379446-CDS-F-serratus_M_contig909:242185..242297Fucus serratus maleCDSF-serratus_M_contig909 242186..242297 -
1690964401.0992966-CDS-F-serratus_M_contig909:242185..2422971690964401.0992966-CDS-F-serratus_M_contig909:242185..242297Fucus serratus maleCDSF-serratus_M_contig909 242186..242297 -
1622932643.5552871-CDS-F-serratus_M_contig909:242619..2427731622932643.5552871-CDS-F-serratus_M_contig909:242619..242773Fucus serratus maleCDSF-serratus_M_contig909 242620..242773 -
1690964401.1084497-CDS-F-serratus_M_contig909:242619..2427731690964401.1084497-CDS-F-serratus_M_contig909:242619..242773Fucus serratus maleCDSF-serratus_M_contig909 242620..242773 -
1622932643.5731008-CDS-F-serratus_M_contig909:243199..2432721622932643.5731008-CDS-F-serratus_M_contig909:243199..243272Fucus serratus maleCDSF-serratus_M_contig909 243200..243272 -
1690964401.1182413-CDS-F-serratus_M_contig909:243199..2432721690964401.1182413-CDS-F-serratus_M_contig909:243199..243272Fucus serratus maleCDSF-serratus_M_contig909 243200..243272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig909.20493.1

>prot_F-serratus_M_contig909.20493.1 ID=prot_F-serratus_M_contig909.20493.1|Name=mRNA_F-serratus_M_contig909.20493.1|organism=Fucus serratus male|type=polypeptide|length=209bp
PFAPVPASENARERVVLPTPSPDGADDYPRETCQPGDRQKGPSRVDGSKP
TILCEYYREDSMPSVHHQDMSCCREGCDREAKAGPKSRPGEIYLFCSGHQ
SPAVIATRTEHCQFVGCWNTPKYGQRQGPLSFCQLHKRAGMYTNRNGQLL
VATRDGSAYKDEDGAAAMGGPWTARQIAAKNEIQYTTLSDFGRFSGELNA
HGESEPPQS
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mRNA from alignment at F-serratus_M_contig909:241087..243272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig909.20493.1 ID=mRNA_F-serratus_M_contig909.20493.1|Name=mRNA_F-serratus_M_contig909.20493.1|organism=Fucus serratus male|type=mRNA|length=2186bp|location=Sequence derived from alignment at F-serratus_M_contig909:241087..243272- (Fucus serratus male)
CCTTTCGCCCCGGTGCCGGCCTCTGAGAATGCTCGCGAACGCGTCGTGTT
GCCGACGCCCTCTCCCGACGGAGGTGATTTCATCTTTGGAATAGTCAAGG
ATAAACAAAGAACGGTGGCTGTCCCAAGAATTTCCTGCCTTACAGATCGA
GGGCGTTCAGGAGTTCATTTGCTGCATCAAACCGTTTCGTGCCACCATTC
CATCTCCGACGAATCACTAGCAAAACATATTTCCATTTCCCTTGGCTCAT
ATTCAATTATCACGTATTATTATTATCTTGCCGTCTCACCTGCACCTCAC
AACTCATTTTCATATGACATCTATCACAGGCAAGAAGTGGGCAAGCGCTA
AAAATGTTTCTTCGCTGCTCGAGCGACAACTAGAATGGTTGCTTCACAGC
GTAGTCCTCATAACCAATATTTCGATCGCAAACCTCTTACGGGACGCAAT
GCCATTGCTTCTGCCGTTTCGGGAACCCCCCCCCCCCCTCCCCCGGCAGC
CGATGATTATCCACGAGAAACCTGCCAACCGGGGGACCGCCAGAAAGGTC
CTTCCCGTGTCGACGGGAGTAAGCCTACGATACTGTGCGAATATTACCGT
GAAGATAGCATGCCAAGTGTCCACCATCAAGACATGTCGTGCTGCCGCGA
AGGGTGAGCTCCACGATCTTGAGGTCGTTCACGCGTTGACGAACAACCCT
CGCGGAGTGAGGAGACCCCGTTGCGTCGTTTCGGGCACCGAAAACTGAAT
TTCATCTCTGAGGGTGACCGATGATCATATTTGCGCGATTGCCGTGACAC
AGTTACTCGCTAGCAGATGTGGATGAGAAACAGCAACGAAATCGAGAGGG
GAGAGCGACAGGCTGTAGTGATACGTGCCCACGCTAGTCGTACCAACACA
AAACTTCCCCTCTTTTGCATTCGTCTCCTCGTAATCCTTCGTTACTCGCA
TGTACGAACCGCCGTCCCGCCGTAGATGCGACCGAGAGGCGAAGGCGGGC
CCCAAATCACGGCCTGGTGAGATCTATCTGTTCTGCTCGGGCCACCAGAG
CCCAGCCGTCATCGCCACCAGAACCGAACATTGCCAGGTGAGGACGGATC
GAGCTCAAAATGGCATGTTATCGGCGCCTCTGACCCGTTGTTTCCCGCTG
CACCGTGCACAATTATCTCTGTATACCTTTACCTCGCTTGACTCCCAGTC
GGTACAAAGCTACTCGCTTACCCCCATCCCTTGTGCCCGCATGGCGTGGC
AGTTCAGCATCTCATAAAGTCTGCTCATCCGCCGAACGACTTCGTCTTCG
ACCGTTGTCACTTTTATACGTCGTAGTTCGTCGGTTGCTGGAATACCCCC
AAGTACGGTCAGCGGCAGGGCCCCCTGAGCTTTTGCCAGCTCCACAAGCG
GGCCGGAATGTACACCAACCGAAATGGCCAGCTCTTGGTCGCCACCCGTG
ATGGGAGCGGTGAGACGATGGCTGCCATTACAGTCTCTTGACGCCGCCCT
ATACGTGTCGGCTTGCGCTTTATACTGATCAGTACCAATAGCTCCTCACG
GTTCACGAAAAAACAGTCAAAGCAAGCAGGCGTTACAGTCCCGGCTACGC
GTGTGAAGACCGTGCGCGTACTTAACTTTCGTGCAGGTATGACCGGCAAT
CAATCACGCTTTGGTTCTTAGCTTCGAAACCGAACGCGCCTAGCTCCCGG
TAAGAATGACGTCCTCCCCGCCCCTCTAGATACCGTTCCGCCATGCCCTC
TTTTGCACAACTCATTTGCCAGCCTACAAGGATGAGGACGGTGCTGCTGC
GATGGGTGGTCCTTGGACGGCGCGTCAAATCGCTGCAAAAAACGAAATCC
AATATACAACCCTCTCAGGTGACAAGGTCACAGGAACACCGCCCCCACTT
TCTAGCTCTGTCCCTTGGAACATACCGGAACATTGAACGGGATATGCGGA
TGAACTGTTATTGCCCTCTCTGCAGACAGATCAACGTGGCGGTTGGTTGA
ATGACTTGCAGGTGCTATAATAATGAGCCTGTATTGAGATAAATAGTCGG
CTACCGACGGCAACACCGCGTCTCCTCCCGCCTTTACCGACTTAATGTAC
CCCCTTCACCTGCTCCCTTATCAAGACTTCGGACGTTTCTCTGGCGAACT
AAATGCCCATGGGGAGAGCGAACCCCCTCAATCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig909:241087..243272-

>mRNA_F-serratus_M_contig909.20493.1 ID=mRNA_F-serratus_M_contig909.20493.1|Name=mRNA_F-serratus_M_contig909.20493.1|organism=Fucus serratus male|type=CDS|length=1254bp|location=Sequence derived from alignment at F-serratus_M_contig909:241087..243272- (Fucus serratus male)
CCTTTCGCCCCGGTGCCGGCCTCTGAGAATGCTCGCGAACGCGTCGTGTT
GCCGACGCCCTCTCCCGACGGAGCCTTTCGCCCCGGTGCCGGCCTCTGAG
AATGCTCGCGAACGCGTCGTGTTGCCGACGCCCTCTCCCGACGGAGCCGA
TGATTATCCACGAGAAACCTGCCAACCGGGGGACCGCCAGAAAGGTCCTT
CCCGTGTCGACGGGAGTAAGCCTACGATACTGTGCGAATATTACCGTGAA
GATAGCATGCCAAGTGTCCACCATCAAGACATGTCGTGCTGCCGCGAAGG
CCGATGATTATCCACGAGAAACCTGCCAACCGGGGGACCGCCAGAAAGGT
CCTTCCCGTGTCGACGGGAGTAAGCCTACGATACTGTGCGAATATTACCG
TGAAGATAGCATGCCAAGTGTCCACCATCAAGACATGTCGTGCTGCCGCG
AAGGATGCGACCGAGAGGCGAAGGCGGGCCCCAAATCACGGCCTGGTGAG
ATCTATCTGTTCTGCTCGGGCCACCAGAGCCCAGCCGTCATCGCCACCAG
AACCGAACATTGCCAGATGCGACCGAGAGGCGAAGGCGGGCCCCAAATCA
CGGCCTGGTGAGATCTATCTGTTCTGCTCGGGCCACCAGAGCCCAGCCGT
CATCGCCACCAGAACCGAACATTGCCAGTTCGTCGGTTGCTGGAATACCC
CCAAGTACGGTCAGCGGCAGGGCCCCCTGAGCTTTTGCCAGCTCCACAAG
CGGGCCGGAATGTACACCAACCGAAATGGCCAGCTCTTGGTCGCCACCCG
TGATGGGAGCGTTCGTCGGTTGCTGGAATACCCCCAAGTACGGTCAGCGG
CAGGGCCCCCTGAGCTTTTGCCAGCTCCACAAGCGGGCCGGAATGTACAC
CAACCGAAATGGCCAGCTCTTGGTCGCCACCCGTGATGGGAGCGCCTACA
AGGATGAGGACGGTGCTGCTGCGATGGGTGGTCCTTGGACGGCGCGTCAA
ATCGCTGCAAAAAACGAAATCCAATATACAACCCTCTCAGCCTACAAGGA
TGAGGACGGTGCTGCTGCGATGGGTGGTCCTTGGACGGCGCGTCAAATCG
CTGCAAAAAACGAAATCCAATATACAACCCTCTCAGACTTCGGACGTTTC
TCTGGCGAACTAAATGCCCATGGGGAGAGCGAACCCCCTCAATCGACTTC
GGACGTTTCTCTGGCGAACTAAATGCCCATGGGGAGAGCGAACCCCCTCA
ATCG
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