mRNA_F-serratus_M_contig904.20467.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig904.20467.1
Unique NamemRNA_F-serratus_M_contig904.20467.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig904.20467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig904contigF-serratus_M_contig904:159062..159712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size652
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.5406957-UTR-F-serratus_M_contig904:159061..1592861622932638.5406957-UTR-F-serratus_M_contig904:159061..159286Fucus serratus maleUTRF-serratus_M_contig904 159062..159286 +
1690964398.7178946-UTR-F-serratus_M_contig904:159061..1592861690964398.7178946-UTR-F-serratus_M_contig904:159061..159286Fucus serratus maleUTRF-serratus_M_contig904 159062..159286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.5524805-CDS-F-serratus_M_contig904:159286..1597121622932638.5524805-CDS-F-serratus_M_contig904:159286..159712Fucus serratus maleCDSF-serratus_M_contig904 159287..159712 +
1690964398.72969-CDS-F-serratus_M_contig904:159286..1597121690964398.72969-CDS-F-serratus_M_contig904:159286..159712Fucus serratus maleCDSF-serratus_M_contig904 159287..159712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig904.20467.1prot_F-serratus_M_contig904.20467.1Fucus serratus malepolypeptideF-serratus_M_contig904 159287..159712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig904.20467.1

>prot_F-serratus_M_contig904.20467.1 ID=prot_F-serratus_M_contig904.20467.1|Name=mRNA_F-serratus_M_contig904.20467.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MYIKLLSMKCTLRFSCRCIQSRNIRNIEPSGQGKVCWGSVGGSTYQLCTD
TIHYFTSGNQFIMLFIPFASPFTRPQKVADHSERLEEISELRRTRPVRCK
PLNGDEIPNPTYPLCTSHFSFSSTDSLELLHDQHCCCNHCTP
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mRNA from alignment at F-serratus_M_contig904:159062..159712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig904.20467.1 ID=mRNA_F-serratus_M_contig904.20467.1|Name=mRNA_F-serratus_M_contig904.20467.1|organism=Fucus serratus male|type=mRNA|length=651bp|location=Sequence derived from alignment at F-serratus_M_contig904:159062..159712+ (Fucus serratus male)
CAGCACGGCCAAACTCCCCCGCCACTCTCGCATCTGGGACGGTAGTCCTA
TGATTATGGCAAATACAAACTCGGAGCGAGTGCGTACACACCAATTCTGT
CAGCTCCACCCATCACATGTCAAGCATACGGGCCGTAGTGGCTCGATTTT
TTTACCTTCGCAGCAAAAAGAGCGCTATTCTATACGTAAATGATCGATTT
TTAACTACATACCTTCCAGGTTTTCATGTACATCAAGCTTTTATCGATGA
AATGTACCCTCCGGTTTTCTTGTCGTTGCATCCAATCACGAAACATAAGG
AACATCGAGCCTTCCGGACAAGGAAAGGTGTGTTGGGGATCTGTGGGGGG
CTCTACCTACCAACTATGCACCGACACAATACATTATTTTACAAGCGGAA
ACCAGTTTATCATGCTCTTCATCCCCTTCGCCTCGCCATTCACAAGGCCC
CAGAAAGTCGCAGATCACTCCGAACGCTTGGAAGAGATTAGCGAGTTACG
GCGAACACGCCCCGTTCGGTGTAAACCGTTAAATGGAGATGAAATCCCAA
ACCCCACTTACCCCCTGTGTACGTCCCATTTCAGTTTCTCTAGCACCGAC
AGTTTGGAGCTCCTACATGACCAACACTGCTGCTGTAACCACTGCACCCC
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig904:159062..159712+

>mRNA_F-serratus_M_contig904.20467.1 ID=mRNA_F-serratus_M_contig904.20467.1|Name=mRNA_F-serratus_M_contig904.20467.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig904:159062..159712+ (Fucus serratus male)
ATGTACATCAAGCTTTTATCGATGAAATGTACCCTCCGGTTTTCTTGTCG
TTGCATCCAATCACGAAACATAAGGAACATCGAGCCTTCCGGACAAGGAA
AGGTGTGTTGGGGATCTGTGGGGGGCTCTACCTACCAACTATGCACCGAC
ACAATACATTATTTTACAAGCGGAAACCAGTTTATCATGCTCTTCATCCC
CTTCGCCTCGCCATTCACAAGGCCCCAGAAAGTCGCAGATCACTCCGAAC
GCTTGGAAGAGATTAGCGAGTTACGGCGAACACGCCCCGTTCGGTGTAAA
CCGTTAAATGGAGATGAAATCCCAAACCCCACTTACCCCCTGTGTACGTC
CCATTTCAGTTTCTCTAGCACCGACAGTTTGGAGCTCCTACATGACCAAC
ACTGCTGCTGTAACCACTGCACCCCCATGTACATCAAGCTTTTATCGATG
AAATGTACCCTCCGGTTTTCTTGTCGTTGCATCCAATCACGAAACATAAG
GAACATCGAGCCTTCCGGACAAGGAAAGGTGTGTTGGGGATCTGTGGGGG
GCTCTACCTACCAACTATGCACCGACACAATACATTATTTTACAAGCGGA
AACCAGTTTATCATGCTCTTCATCCCCTTCGCCTCGCCATTCACAAGGCC
CCAGAAAGTCGCAGATCACTCCGAACGCTTGGAAGAGATTAGCGAGTTAC
GGCGAACACGCCCCGTTCGGTGTAAACCGTTAAATGGAGATGAAATCCCA
AACCCCACTTACCCCCTGTGTACGTCCCATTTCAGTTTCTCTAGCACCGA
CAGTTTGGAGCTCCTACATGACCAACACTGCTGCTGTAACCACTGCACCC
CC
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