mRNA_F-serratus_M_contig904.20464.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig904.20464.1
Unique NamemRNA_F-serratus_M_contig904.20464.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig904.20464.1 vs. uniprot
Match: A0A6H5L3G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G2_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.320e-5
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = -2 
Query:  172 GAGLEALLCRRA--TSDEEITRRAVQIDGSARGGLVAIDGCCGPLVARPRRFEVAAALHRLPGVRFQRAPEVASVD 393
            G GLEAL  R     ++   T++A   + +    ++       PLVA PRRFEVAAALHR PGV+F+ A  V   D
Sbjct:  746 GLGLEALFVRDTGVAAEGRDTQQATAAESTTANSILGR-----PLVALPRRFEVAAALHRFPGVQFRSAAPVTPED 816
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig904.20464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3G2_9PHAE6.320e-542.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig904contigF-serratus_M_contig904:137409..137838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size403
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig904.20464.1prot_F-serratus_M_contig904.20464.1Fucus serratus malepolypeptideF-serratus_M_contig904 137474..137776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.4027412-UTR-F-serratus_M_contig904:137408..1374731622932638.4027412-UTR-F-serratus_M_contig904:137408..137473Fucus serratus maleUTRF-serratus_M_contig904 137409..137473 +
1690964398.6394145-UTR-F-serratus_M_contig904:137408..1374731690964398.6394145-UTR-F-serratus_M_contig904:137408..137473Fucus serratus maleUTRF-serratus_M_contig904 137409..137473 +
1622932638.446587-UTR-F-serratus_M_contig904:137776..1378381622932638.446587-UTR-F-serratus_M_contig904:137776..137838Fucus serratus maleUTRF-serratus_M_contig904 137777..137838 +
1690964398.680105-UTR-F-serratus_M_contig904:137776..1378381690964398.680105-UTR-F-serratus_M_contig904:137776..137838Fucus serratus maleUTRF-serratus_M_contig904 137777..137838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.4153624-CDS-F-serratus_M_contig904:137473..1374841622932638.4153624-CDS-F-serratus_M_contig904:137473..137484Fucus serratus maleCDSF-serratus_M_contig904 137474..137484 +
1690964398.6526332-CDS-F-serratus_M_contig904:137473..1374841690964398.6526332-CDS-F-serratus_M_contig904:137473..137484Fucus serratus maleCDSF-serratus_M_contig904 137474..137484 +
1622932638.4279466-CDS-F-serratus_M_contig904:137511..1377761622932638.4279466-CDS-F-serratus_M_contig904:137511..137776Fucus serratus maleCDSF-serratus_M_contig904 137512..137776 +
1690964398.6687863-CDS-F-serratus_M_contig904:137511..1377761690964398.6687863-CDS-F-serratus_M_contig904:137511..137776Fucus serratus maleCDSF-serratus_M_contig904 137512..137776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig904.20464.1

>prot_F-serratus_M_contig904.20464.1 ID=prot_F-serratus_M_contig904.20464.1|Name=mRNA_F-serratus_M_contig904.20464.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MLDPCAELERLSLHIFSPTRRRFSHYGLTQDKNEQHQQRQLQGRAETVLQ
GVGARPPPPRIASGAQPKDHNIHLSLLVHREHFHRSARPSS*
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mRNA from alignment at F-serratus_M_contig904:137409..137838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig904.20464.1 ID=mRNA_F-serratus_M_contig904.20464.1|Name=mRNA_F-serratus_M_contig904.20464.1|organism=Fucus serratus male|type=mRNA|length=430bp|location=Sequence derived from alignment at F-serratus_M_contig904:137409..137838+ (Fucus serratus male)
CTCTTACGTTGCCAATCTGGCGTTCGGTGCAGAGCCGTGCCCGCGTAGAT
AAGACGCCCGCGCAGATGTTAGATCCGCTTTTCCCCCAAAAATATGGTTC
AAAATGTGCTGAACTGGAAAGACTGTCCTTGCATATTTTCAGCCCTACGA
GGCGTCGATTTTCCCACTATGGTCTAACTCAAGACAAGAACGAGCAGCAT
CAACAGAGGCAACTTCAGGGGCGCGCTGAAACCGTACTCCAGGGAGTCGG
TGCAAGGCCGCCGCCACCTCGAATCGCCTCGGGCGCGCAACCAAAGGACC
ACAACATCCATCTATCGCTACTAGTCCACCGCGAGCACTTCCATCGATCT
GCACGGCCCTCCTCGTAATCTCTTCGTCAGATGTAGCCCGGCGACAAAGC
AAAGCCTCCAGTCCGGCCCCCTCTCCCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig904:137409..137838+

>mRNA_F-serratus_M_contig904.20464.1 ID=mRNA_F-serratus_M_contig904.20464.1|Name=mRNA_F-serratus_M_contig904.20464.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig904:137409..137838+ (Fucus serratus male)
ATGTTAGATCCATGTTAGATCCATGTGCTGAACTGGAAAGACTGTCCTTG
CATATTTTCAGCCCTACGAGGCGTCGATTTTCCCACTATGGTCTAACTCA
AGACAAGAACGAGCAGCATCAACAGAGGCAACTTCAGGGGCGCGCTGAAA
CCGTACTCCAGGGAGTCGGTGCAAGGCCGCCGCCACCTCGAATCGCCTCG
GGCGCGCAACCAAAGGACCACAACATCCATCTATCGCTACTAGTCCACCG
CGAGCACTTCCATCGATCTGCACGGCCCTCCTCGTAAATGTGCTGAACTG
GAAAGACTGTCCTTGCATATTTTCAGCCCTACGAGGCGTCGATTTTCCCA
CTATGGTCTAACTCAAGACAAGAACGAGCAGCATCAACAGAGGCAACTTC
AGGGGCGCGCTGAAACCGTACTCCAGGGAGTCGGTGCAAGGCCGCCGCCA
CCTCGAATCGCCTCGGGCGCGCAACCAAAGGACCACAACATCCATCTATC
GCTACTAGTCCACCGCGAGCACTTCCATCGATCTGCACGGCCCTCCTCGT
AA
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