mRNA_F-serratus_M_contig1278.2046.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1278.2046.1
Unique NamemRNA_F-serratus_M_contig1278.2046.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1278.2046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1278contigF-serratus_M_contig1278:80896..83030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size955
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1278.2046.1prot_F-serratus_M_contig1278.2046.1Fucus serratus malepolypeptideF-serratus_M_contig1278 80896..82729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.5896053-CDS-F-serratus_M_contig1278:80895..809471622929210.5896053-CDS-F-serratus_M_contig1278:80895..80947Fucus serratus maleCDSF-serratus_M_contig1278 80896..80947 +
1690962751.7089388-CDS-F-serratus_M_contig1278:80895..809471690962751.7089388-CDS-F-serratus_M_contig1278:80895..80947Fucus serratus maleCDSF-serratus_M_contig1278 80896..80947 +
1622929210.6055067-CDS-F-serratus_M_contig1278:81279..814171622929210.6055067-CDS-F-serratus_M_contig1278:81279..81417Fucus serratus maleCDSF-serratus_M_contig1278 81280..81417 +
1690962751.7175202-CDS-F-serratus_M_contig1278:81279..814171690962751.7175202-CDS-F-serratus_M_contig1278:81279..81417Fucus serratus maleCDSF-serratus_M_contig1278 81280..81417 +
1622929210.6227229-CDS-F-serratus_M_contig1278:81806..818961622929210.6227229-CDS-F-serratus_M_contig1278:81806..81896Fucus serratus maleCDSF-serratus_M_contig1278 81807..81896 +
1690962751.7275271-CDS-F-serratus_M_contig1278:81806..818961690962751.7275271-CDS-F-serratus_M_contig1278:81806..81896Fucus serratus maleCDSF-serratus_M_contig1278 81807..81896 +
1622929210.6370635-CDS-F-serratus_M_contig1278:82355..827291622929210.6370635-CDS-F-serratus_M_contig1278:82355..82729Fucus serratus maleCDSF-serratus_M_contig1278 82356..82729 +
1690962751.7355459-CDS-F-serratus_M_contig1278:82355..827291690962751.7355459-CDS-F-serratus_M_contig1278:82355..82729Fucus serratus maleCDSF-serratus_M_contig1278 82356..82729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.6493216-UTR-F-serratus_M_contig1278:82729..830301622929210.6493216-UTR-F-serratus_M_contig1278:82729..83030Fucus serratus maleUTRF-serratus_M_contig1278 82730..83030 +
1690962751.7462714-UTR-F-serratus_M_contig1278:82729..830301690962751.7462714-UTR-F-serratus_M_contig1278:82729..83030Fucus serratus maleUTRF-serratus_M_contig1278 82730..83030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1278.2046.1

>prot_F-serratus_M_contig1278.2046.1 ID=prot_F-serratus_M_contig1278.2046.1|Name=mRNA_F-serratus_M_contig1278.2046.1|organism=Fucus serratus male|type=polypeptide|length=218bp
GGATTGGDLVPPPPVPEASPDGDSDLSQKLAAALDAAGVPVDEDQADDDD
TDIDVEAPVVPPEDQGSVAGGVLGFLFGGGEARHEEGQPQDKQAPTEETP
AAASEDSTPAAKLDSDVTSPLKESSAGLSRDNDTLTSMFFGPSSKDKVAK
EAAAKSTSEQSEEDKDNNNDKNDGGFFGMIAETLGLIPSNEEEDETAAPA
AAADADVGATTWSPGKE*
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mRNA from alignment at F-serratus_M_contig1278:80896..83030+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1278.2046.1 ID=mRNA_F-serratus_M_contig1278.2046.1|Name=mRNA_F-serratus_M_contig1278.2046.1|organism=Fucus serratus male|type=mRNA|length=2135bp|location=Sequence derived from alignment at F-serratus_M_contig1278:80896..83030+ (Fucus serratus male)
GGCGGCGCGACCACTGGGGGCGACCTGGTCCCTCCTCCTCCTGTACCCGA
AGGTACATTGTAAACAAGGATGAATTGAGGCAAGGCGAGTTTCCTGTGCT
TTTTTCGGTGGTATTTCTTAAAAGATACATAACTTTGTTTTAAGGCTCAA
ATCAGGGGACATTGGTCTTTTTTCTTTTCCCCCAAGGGAAAATTATCGGG
TAGGTCCCTCCCCAGCGGCGCGGTTGCAGCGATTGTTGCACAGCTCTAAA
TAGTTAAAACAGGGGAGCTCGGCGCGATTGGCAAGTGATGGCGAGCGATT
ATTTTGATTGTATAGAAATAGGAAGAGTACGACCCGACCCCACCGCGGGT
TTTCCCGCCCCCAATGTGCGTTTTTCGCTCACAGCCTCGCCAGACGGTGA
CTCAGACTTGAGCCAGAAACTGGCCGCCGCCCTGGACGCCGCCGGCGTGC
CCGTGGACGAGGACCAAGCGGACGACGACGACACGGATATCGACGTCGAG
GCCCCCGTCGTGCCGCCGGAGGGTAGGTTAAGGACTTTATGGTGGTGGTC
GCTGTGTATAGTTAAGGACAAAAGGACGGGCATGCTGTGGCGGGGCTCGG
CGCGGCAGCGTTTCGAGTCTAGTCAAATTGGGTTGTTTCTCTTTGCGTTG
AGAGGGGTCACGCTTGTTTGCCGCTCGAGAATGTGGACAAAAATAAGCAC
AAGAGCCAAAACGAAGACCTGGGCGCGGAATGGAACACCCGCTCGGGATG
TCCGACCAAAAAAAGTGCATACCTGGTACATTTTCATTATGTGCATGTTC
TACAGTCGTTCTGCTTTTTGTTTTTCCAACATTGCTTGCTCAACGTTTCC
CTCGCTGCACCTTCTCCCCCGCTTAACTTGAACGTTCACTCTATTTCCTG
GAAAAATGAAGACCAAGGTAGTGTAGCTGGAGGCGTGCTTGGCTTCCTCT
TCGGAGGTGGCGAGGCCAGGCATGAAGAGGGACAACCCCAAGACAAACAG
GGTGAGACTGGAGCCTCACCCGTCTCTGATCTTATGGTTATGATATGATT
GAACTTGGAAAATGTGTAAATCCCCCCCCACACACACACACGCACAACAT
AACCTGGACCCAGGTGTTGGTGAGCGCGTTGTTAATGCAAAAAGGGGAGG
ATATATAAGATATGGTGAAGGGAATCGGACGCCGTGATCCGATAGTGCGC
TGAGGTTACCCTTGTGAGATACGACCAACCTGCCTCCCCTCATGGAACCA
TTGTCGAGAGTACTGCGATCACGTTTTCGTTTGGTCCTGTGTCCAACTAT
GTCTTATGACGGCACCCTTTTGTGCATCATAACTTGTGCCAGATACCGTA
TTTGGTATGTCTCTTCATGTCGTAAATACCTTGGTACCGGAATAAGTCTC
ATCATGATGTCATATGATGTAAATCTTCTGTATGGTCTTATCATCTATAC
ATGTATTCAGCACCCACGGAGGAAACCCCCGCCGCCGCCAGCGAAGACTC
TACCCCGGCAGCAAAATTGGATTCGGATGTGACCAGCCCCCTGAAGGAGT
CCTCGGCGGGCTTAAGCAGAGACAACGATACTCTCACCTCTATGTTTTTC
GGCCCCAGCTCTAAAGACAAGGTGGCCAAAGAGGCCGCGGCCAAATCCAC
CTCTGAACAAAGCGAAGAAGACAAGGATAACAACAACGACAAGAACGATG
GTGGTTTCTTTGGGATGATCGCTGAAACGCTGGGCCTTATCCCTTCGAAC
GAGGAGGAGGATGAAACCGCTGCTCCTGCTGCTGCGGCGGATGCTGATGT
GGGTGCGACCACCTGGTCTCCGGGAAAGGAATAAGCGATCGGTACTTGTA
GGGAGACTGACTCGAGTCTTAATTGGTTCTTCTTTTGTCAGTATAGTAGA
GTGGTTGATGCAACGGCACAGTCTTGGAGGAAGGACTGCCTTGAGTTCAT
TGATTACCTATTCTGGTCTGAAGTTATTTATTAGGCCGTCAACCTTACGA
GTGTGTGAGTGTAGGGAGTGGGATGCGATTGCACGGTCTGCACGACAGTT
GATTTGAGGTCCCAACCGGGCCAGATATATGTCATCCATGCACAGGTCGC
ACGCGTGGCTTAAGGCGTTTCTCGAGCTGAGAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1278:80896..83030+

>mRNA_F-serratus_M_contig1278.2046.1 ID=mRNA_F-serratus_M_contig1278.2046.1|Name=mRNA_F-serratus_M_contig1278.2046.1|organism=Fucus serratus male|type=CDS|length=1308bp|location=Sequence derived from alignment at F-serratus_M_contig1278:80896..83030+ (Fucus serratus male)
GGCGGCGCGACCACTGGGGGCGACCTGGTCCCTCCTCCTCCTGTACCCGA
AGGGCGGCGCGACCACTGGGGGCGACCTGGTCCCTCCTCCTCCTGTACCC
GAAGCCTCGCCAGACGGTGACTCAGACTTGAGCCAGAAACTGGCCGCCGC
CCTGGACGCCGCCGGCGTGCCCGTGGACGAGGACCAAGCGGACGACGACG
ACACGGATATCGACGTCGAGGCCCCCGTCGTGCCGCCGGAGGCCTCGCCA
GACGGTGACTCAGACTTGAGCCAGAAACTGGCCGCCGCCCTGGACGCCGC
CGGCGTGCCCGTGGACGAGGACCAAGCGGACGACGACGACACGGATATCG
ACGTCGAGGCCCCCGTCGTGCCGCCGGAGGACCAAGGTAGTGTAGCTGGA
GGCGTGCTTGGCTTCCTCTTCGGAGGTGGCGAGGCCAGGCATGAAGAGGG
ACAACCCCAAGACAAACAGGACCAAGGTAGTGTAGCTGGAGGCGTGCTTG
GCTTCCTCTTCGGAGGTGGCGAGGCCAGGCATGAAGAGGGACAACCCCAA
GACAAACAGGCACCCACGGAGGAAACCCCCGCCGCCGCCAGCGAAGACTC
TACCCCGGCAGCAAAATTGGATTCGGATGTGACCAGCCCCCTGAAGGAGT
CCTCGGCGGGCTTAAGCAGAGACAACGATACTCTCACCTCTATGTTTTTC
GGCCCCAGCTCTAAAGACAAGGTGGCCAAAGAGGCCGCGGCCAAATCCAC
CTCTGAACAAAGCGAAGAAGACAAGGATAACAACAACGACAAGAACGATG
GTGGTTTCTTTGGGATGATCGCTGAAACGCTGGGCCTTATCCCTTCGAAC
GAGGAGGAGGATGAAACCGCTGCTCCTGCTGCTGCGGCGGATGCTGATGT
GGGTGCGACCACCTGGTCTCCGGGAAAGGAATAACACCCACGGAGGAAAC
CCCCGCCGCCGCCAGCGAAGACTCTACCCCGGCAGCAAAATTGGATTCGG
ATGTGACCAGCCCCCTGAAGGAGTCCTCGGCGGGCTTAAGCAGAGACAAC
GATACTCTCACCTCTATGTTTTTCGGCCCCAGCTCTAAAGACAAGGTGGC
CAAAGAGGCCGCGGCCAAATCCACCTCTGAACAAAGCGAAGAAGACAAGG
ATAACAACAACGACAAGAACGATGGTGGTTTCTTTGGGATGATCGCTGAA
ACGCTGGGCCTTATCCCTTCGAACGAGGAGGAGGATGAAACCGCTGCTCC
TGCTGCTGCGGCGGATGCTGATGTGGGTGCGACCACCTGGTCTCCGGGAA
AGGAATAA
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