mRNA_F-serratus_M_contig903.20458.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig903.20458.1
Unique NamemRNA_F-serratus_M_contig903.20458.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig903.20458.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.340e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  242 EQLEPLPELPDTGEDRFFIKEALDYPWPGAPVDSTSFPTWGSAGTEMAAIGVA 400
            E+L+PLPELP++ ++RFF KEAL++ +P  P ++  FPTWGS G EMAAIG A
Sbjct:    7 EELDPLPELPESADERFFTKEALEFQYPTGPAENPLFPTWGSTGAEMAAIGAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig903.20458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE6.340e-1158.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig903contigF-serratus_M_contig903:301533..303587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size735
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig903.20458.1prot_F-serratus_M_contig903.20458.1Fucus serratus malepolypeptideF-serratus_M_contig903 301741..303579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.2340117-UTR-F-serratus_M_contig903:301532..3017401622932638.2340117-UTR-F-serratus_M_contig903:301532..301740Fucus serratus maleUTRF-serratus_M_contig903 301533..301740 +
1690964398.5432847-UTR-F-serratus_M_contig903:301532..3017401690964398.5432847-UTR-F-serratus_M_contig903:301532..301740Fucus serratus maleUTRF-serratus_M_contig903 301533..301740 +
1622932638.2801282-UTR-F-serratus_M_contig903:303579..3035871622932638.2801282-UTR-F-serratus_M_contig903:303579..303587Fucus serratus maleUTRF-serratus_M_contig903 303580..303587 +
1690964398.5708387-UTR-F-serratus_M_contig903:303579..3035871690964398.5708387-UTR-F-serratus_M_contig903:303579..303587Fucus serratus maleUTRF-serratus_M_contig903 303580..303587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.2496855-CDS-F-serratus_M_contig903:301740..3017761622932638.2496855-CDS-F-serratus_M_contig903:301740..301776Fucus serratus maleCDSF-serratus_M_contig903 301741..301776 +
1690964398.5530193-CDS-F-serratus_M_contig903:301740..3017761690964398.5530193-CDS-F-serratus_M_contig903:301740..301776Fucus serratus maleCDSF-serratus_M_contig903 301741..301776 +
1622932638.2631488-CDS-F-serratus_M_contig903:303096..3035791622932638.2631488-CDS-F-serratus_M_contig903:303096..303579Fucus serratus maleCDSF-serratus_M_contig903 303097..303579 +
1690964398.5617983-CDS-F-serratus_M_contig903:303096..3035791690964398.5617983-CDS-F-serratus_M_contig903:303096..303579Fucus serratus maleCDSF-serratus_M_contig903 303097..303579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig903.20458.1

>prot_F-serratus_M_contig903.20458.1 ID=prot_F-serratus_M_contig903.20458.1|Name=mRNA_F-serratus_M_contig903.20458.1|organism=Fucus serratus male|type=polypeptide|length=173bp
MARRSSFIEILEQLEPLPELPDTGEDRFFIKEALDYPWPGAPVDSTSFPT
WGSAGTEMAAIGVAELAAAETVEAVAAASITVTPPPEVSMCGIKRALAEP
SSQQQHLPAAPEQQWARPAVAADRTIFLRQRLGGEILSSGNSSTSTCSDS
ASDDVPGEWEAGSGGQDSGTSP*
back to top

mRNA from alignment at F-serratus_M_contig903:301533..303587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig903.20458.1 ID=mRNA_F-serratus_M_contig903.20458.1|Name=mRNA_F-serratus_M_contig903.20458.1|organism=Fucus serratus male|type=mRNA|length=2055bp|location=Sequence derived from alignment at F-serratus_M_contig903:301533..303587+ (Fucus serratus male)
CCGGAACTGATTTTGAACACACGTACCTTTTGCCTGGGGCCACAAATCCC
ATCATCACAAGTATAGACGGCCACAGTAGTCAGCGCATAACCTTTGAGAC
ACTTGGCCGGGAGCGGAACGGGCGGACGATCACGAACCCTCTCGAGCACG
ACATCCATCCGAGAGAACTTAACGTCTCGGTATCGTCAGGTGCGTCGTCT
GGGAAGCGATGGCGAGAAGGTCGAGCTTCATCGAGATTCTTGAGGTAAGA
AAGAGTACACAGTAGTCCTGAATGGCTTTTGTCTAGTACTACAGACAAAA
GGAGCAGAACTGATCACCAAAACATTGCGAACGCCAGCAGTAAGCAGCAG
TTTTTACCTGAGGGAAGAAAATAAATAATCGTAAAATACATAGTAGACGG
GGTTCCGTGGTCACGACGAGGCTATAAGAGGGCCCTGTGTAGCTCCGCCC
TGGGGGAACGGCCAGACAGGTTTACTTCAACGACGTTTTGGCGGAGGGAA
GCCGAGGTTCTTGATTTTTGAACCCTAAAATACTCTAGGAAGGCAAGGGG
TCCTTCATACTCCGCCGAAGGGTCGGAGGACAACATGCGCCTCAATACTT
TACTGTCCTTCCTTCAGGACATTCTGATGCCGGCGCACTCTCGTACCCCG
AGATGATTTGAAGAGATGATGGCGATTTCGTGCGCACCGCTATGTTTCCG
TGACTTCAACTCGTGGCTTGCTCCGATCTGCAGAACTCGGTTTTCTCACA
ACTATAACTCACTACCAAGTCTTCTCTTCTGTACTGGTATGCAGTAGTGC
GATCAATATTGCGTGAAAGAACAATCTCTTGCCGCAAACCGACATCGTTC
CACGAGTAGATCATCGAGTCTCTGCCCGGCTGGATAACTGCGTCATAATA
CACACGACTCGCAGAGACACTCGTCTCGAACAATCGCGTAATGTGCTCGA
CACATTTCTAGCATTCCGCGGGAGGATACAGTACTGGTACAGAATCTTGA
CACTTACGAGTATCAAAAGGAATTTTGTAGAAAAGAAATACCGAGTAGAT
ATTCTCTGCTATTTAGAACTTACCAAACACTGTGGTGCAAGTACTCGCAG
CTTTATCTGCGGTGCAAGTACTCGCAGCTTTATGGTCCGACAGCTCTATT
ATGACTCTGACTACTGTTCAGGCACCGTTATGTACCGGGCCTGATTATAG
AGCTTCACGGGGCAGTCAGTGCGAAGCTAACGCCCCTTCCCAATTCGGGG
TTCATGTTGTAGTTGACTTTCACTTTTATGGAAAACTTTGCCATGTCCGC
TGATTTCCGGCCCTTCGTACAGCACTTGTATCGCCTTGGTAATCCCCCCG
ATATAATGGGGGGAAAACACCGTCGCTCCAGAACGCGTAAAGCCAGTCCC
TATGATGACGGATGCACAACATATTGTATGCTTGTTTAGAGCTATGATAT
AGCTGTGTCGGTAGCTCCAAGATACTCCCCGTTGTATTATCAGTTTGTAC
GGCTTCATGCGCAAGAGCATACATTCACAATTCCCTCTCTCTCTTCGTTT
GTGCTCGGCAACAGCAACTGGAACCCTTGCCCGAGCTGCCGGACACCGGG
GAAGACCGTTTCTTCATCAAAGAAGCCCTCGATTACCCGTGGCCCGGGGC
GCCGGTAGACAGCACCTCTTTCCCTACGTGGGGCTCAGCGGGCACTGAGA
TGGCGGCCATTGGCGTGGCGGAGTTGGCAGCAGCGGAGACGGTAGAAGCG
GTGGCGGCAGCTTCCATCACTGTAACACCTCCGCCGGAGGTGTCCATGTG
CGGGATCAAGCGCGCCCTGGCCGAACCGTCTTCTCAGCAGCAGCACCTGC
CGGCCGCGCCAGAACAGCAATGGGCACGCCCTGCAGTTGCCGCGGACAGG
ACAATCTTCCTGCGGCAGCGCCTCGGCGGCGAGATCTTGTCCTCGGGCAA
TTCGTCGACAAGCACCTGTTCGGACTCGGCGAGCGACGACGTACCTGGGG
AATGGGAGGCAGGGAGCGGCGGTCAGGACAGTGGCACGAGCCCCTGAACA
GCTTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig903:301533..303587+

>mRNA_F-serratus_M_contig903.20458.1 ID=mRNA_F-serratus_M_contig903.20458.1|Name=mRNA_F-serratus_M_contig903.20458.1|organism=Fucus serratus male|type=CDS|length=1038bp|location=Sequence derived from alignment at F-serratus_M_contig903:301533..303587+ (Fucus serratus male)
ATGGCGAGAAGGTCGAGCTTCATCGAGATTCTTGAGATGGCGAGAAGGTC
GAGCTTCATCGAGATTCTTGAGCAACTGGAACCCTTGCCCGAGCTGCCGG
ACACCGGGGAAGACCGTTTCTTCATCAAAGAAGCCCTCGATTACCCGTGG
CCCGGGGCGCCGGTAGACAGCACCTCTTTCCCTACGTGGGGCTCAGCGGG
CACTGAGATGGCGGCCATTGGCGTGGCGGAGTTGGCAGCAGCGGAGACGG
TAGAAGCGGTGGCGGCAGCTTCCATCACTGTAACACCTCCGCCGGAGGTG
TCCATGTGCGGGATCAAGCGCGCCCTGGCCGAACCGTCTTCTCAGCAGCA
GCACCTGCCGGCCGCGCCAGAACAGCAATGGGCACGCCCTGCAGTTGCCG
CGGACAGGACAATCTTCCTGCGGCAGCGCCTCGGCGGCGAGATCTTGTCC
TCGGGCAATTCGTCGACAAGCACCTGTTCGGACTCGGCGAGCGACGACGT
ACCTGGGGAATGGGAGGCAGGGAGCGGCGGTCAGGACAGTGGCACGAGCC
CCTGACAACTGGAACCCTTGCCCGAGCTGCCGGACACCGGGGAAGACCGT
TTCTTCATCAAAGAAGCCCTCGATTACCCGTGGCCCGGGGCGCCGGTAGA
CAGCACCTCTTTCCCTACGTGGGGCTCAGCGGGCACTGAGATGGCGGCCA
TTGGCGTGGCGGAGTTGGCAGCAGCGGAGACGGTAGAAGCGGTGGCGGCA
GCTTCCATCACTGTAACACCTCCGCCGGAGGTGTCCATGTGCGGGATCAA
GCGCGCCCTGGCCGAACCGTCTTCTCAGCAGCAGCACCTGCCGGCCGCGC
CAGAACAGCAATGGGCACGCCCTGCAGTTGCCGCGGACAGGACAATCTTC
CTGCGGCAGCGCCTCGGCGGCGAGATCTTGTCCTCGGGCAATTCGTCGAC
AAGCACCTGTTCGGACTCGGCGAGCGACGACGTACCTGGGGAATGGGAGG
CAGGGAGCGGCGGTCAGGACAGTGGCACGAGCCCCTGA
back to top