mRNA_F-serratus_M_contig902.20441.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig902.20441.1
Unique NamemRNA_F-serratus_M_contig902.20441.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig902.20441.1 vs. uniprot
Match: D7FHW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.510e-29
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 3 
Query:  525 MEDRIKLEVQTLVRSDVDQRVSLGERATESLRKHVNEVAEEISRLGGTVFELNAGARSQKDTLEQVLADSKRNRTSLGVLEKWQQDRTAWFARADGTLSSLAEDNQTLARRAHTQQKVMEEASATHEDLTVAMTRARRAAEA 950
            MEDRIKLEVQT+VR DVDQRVSL ERA E++R+ V+ +AEE++ LG  V   +A   +    LEQ+ A  +R R+++ +LE W+ DR  W AR   +L SL ED++ L+RRAHTQQK + E     EDL V +   RR  EA
Sbjct:    1 MEDRIKLEVQTVVRRDVDQRVSLAERAAEAVRQRVDGLAEEVASLGEIVRRSSATTTAHATALEQLQASQQRTRSTVTLLETWRADREGWCARTSESLHSLTEDSRALSRRAHTQQKALGEVEVAQEDLAVLVKSTRRVGEA 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHW6_ECTSI6.510e-2950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:214767..216700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006160.1
Exons3
Model size950
Cds size828
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20441.1prot_F-serratus_M_contig902.20441.1Fucus serratus malepolypeptideF-serratus_M_contig902 214767..216578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932635.6293738-CDS-F-serratus_M_contig902:214766..2149711622932635.6293738-CDS-F-serratus_M_contig902:214766..214971Fucus serratus maleCDSF-serratus_M_contig902 214767..214971 -
1690964397.191435-CDS-F-serratus_M_contig902:214766..2149711690964397.191435-CDS-F-serratus_M_contig902:214766..214971Fucus serratus maleCDSF-serratus_M_contig902 214767..214971 -
1622932635.650196-CDS-F-serratus_M_contig902:215350..2155231622932635.650196-CDS-F-serratus_M_contig902:215350..215523Fucus serratus maleCDSF-serratus_M_contig902 215351..215523 -
1690964397.2030666-CDS-F-serratus_M_contig902:215350..2155231690964397.2030666-CDS-F-serratus_M_contig902:215350..215523Fucus serratus maleCDSF-serratus_M_contig902 215351..215523 -
1622932635.672859-CDS-F-serratus_M_contig902:216128..2165781622932635.672859-CDS-F-serratus_M_contig902:216128..216578Fucus serratus maleCDSF-serratus_M_contig902 216129..216578 -
1690964397.2146792-CDS-F-serratus_M_contig902:216128..2165781690964397.2146792-CDS-F-serratus_M_contig902:216128..216578Fucus serratus maleCDSF-serratus_M_contig902 216129..216578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932635.6938777-UTR-F-serratus_M_contig902:216578..2167001622932635.6938777-UTR-F-serratus_M_contig902:216578..216700Fucus serratus maleUTRF-serratus_M_contig902 216579..216700 -
1690964397.2266757-UTR-F-serratus_M_contig902:216578..2167001690964397.2266757-UTR-F-serratus_M_contig902:216578..216700Fucus serratus maleUTRF-serratus_M_contig902 216579..216700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig902.20441.1

>prot_F-serratus_M_contig902.20441.1 ID=prot_F-serratus_M_contig902.20441.1|Name=mRNA_F-serratus_M_contig902.20441.1|organism=Fucus serratus male|type=polypeptide|length=276bp
MAREMGSGWEANIAKLIEKANETLAGSAQSRSRNYCSFIDRGGSGRSCGG
VPPSSSRSRAAFSLSSAPKTFRGERSASYRCGTGGWDTSLLGDRSRVPLP
RPDGFPSNLPQAPARFSSFSRLAETRVNDARIVGMEDRIKLEVQTLVRSD
VDQRVSLGERATESLRKHVNEVAEEISRLGGTVFELNAGARSQKDTLEQV
LADSKRNRTSLGVLEKWQQDRTAWFARADGTLSSLAEDNQTLARRAHTQQ
KVMEEASATHEDLTVAMTRARRAAEA
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mRNA from alignment at F-serratus_M_contig902:214767..216700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig902.20441.1 ID=mRNA_F-serratus_M_contig902.20441.1|Name=mRNA_F-serratus_M_contig902.20441.1|organism=Fucus serratus male|type=mRNA|length=1934bp|location=Sequence derived from alignment at F-serratus_M_contig902:214767..216700- (Fucus serratus male)
GTGGCGATCTTTCTCCTCTCCGGTGACAAACTTTCAGCGCGGTAGTTGCT
CCTTCGGGAAAACTCGACGAGCGACATTGCGTCCGGGCGAAGCAAGCTCA
TACCCGTCGTCCGATTTACGCCATGGCGCGTGAGATGGGAAGTGGCTGGG
AAGCCAACATCGCCAAACTCATAGAAAAGGCGAACGAGACTCTTGCAGGC
TCAGCCCAGTCGCGATCCCGCAACTACTGCTCCTTCATTGATCGAGGGGG
CAGCGGCCGAAGTTGTGGTGGAGTACCGCCGTCGTCGTCCAGAAGCAGGG
CAGCCTTTTCATTAAGTTCTGCTCCGAAAACATTCCGAGGTGAACGGAGC
GCTTCATATCGATGTGGAACTGGAGGCTGGGATACGTCATTGCTTGGGGA
CCGCTCGCGGGTTCCGTTGCCGCGTCCCGACGGGTTCCCGTCGAATCTGC
CACAGGCACCCGCTCGGTTTTCATCCTTTTCGAGACTGGCCGAGACAAGG
GTGAACGATGCCAGGATTGTTGGCATGGAGGATCGAATCAAACTAGAAGT
GCAGACATTGGTACGGAGCGATGTGAGTACGGTGGGGGGCAAGGATAAAA
CTAAAAGGATTACCATACTGTATAGCTGGTAAATCAGGAGCAGCGTACGT
TCAGCCGAGTTACGCTTTCTGGGATCCCAAATCTTACTTGCCGATGTACG
TCTGGTTGCGCTTTTTGATTTTAAGTCTCCAGTACCAGACGATGAATGAT
TTTTGTGAAACATAATTGAGGAAAAGAGGCTACGATATTGCGGCCGCCGG
TAAGCCCCAAAGCGCACCCTGCGCAGATGGGAACGGCTGCTGGTTCCTCC
GGATTATTTTCGGAACCGTCGGAATTTGGTGTGTGCAAAGTAAATTCCCC
TCTCCTGGGCGCTACACTTTGTATGTACGTAAATATCAATACAACAATAT
ACTGTCAGTTTGTGCGTACTGTTTTGACGGTACAGAATTTTGCATCTTTT
CGGCCCGGCCGAACCTTCTCTCGTCGCCTCGCCGGTCATCTCGAAAATGT
TAAGATGTGATGAACTTTTGGGCGGACGATGACATCTCCGGCTGTCAACC
CAACCTCTCGTCGACGAAGGAAACGTGCTTTACGATGTTGCCCACGCCTG
ACCGTCTCTCATGCTGTTCTGGTCAAGGTCGATCAGCGAGTATCTCTTGG
TGAAAGGGCAACAGAGAGCCTACGTAAGCACGTGAATGAAGTCGCTGAGG
AGATTTCTCGCCTCGGGGGCACCGTCTTCGAACTCAACGCCGGCGCGCGA
TCGCAAAAGGATACTCTGGAGCAGGTGCTGGCGGACAGTAAGCGCAACAG
GTGCGCGTTCCAACGAAGAAGCTGATTTCGCGTGGATACCTCATTCAAGA
CCCGTACCCGCTCAAACCCTCCGGGGCTGTTCACTGGAGGATACACTCCA
TTAGATCTACAGCGCAACGGGAGATATTTTGCAGAGGACATCACCTTGGG
TCATTGATTGCCCATGTTCTCATATAACATAGAGAATATGGCATGAAATG
TTTTCGAGTATCCTTGTAACAACTTGTCAGCGTGACTGCGTGAAAGCTAC
CGTTGACCATCGTTTCGAAATGGAACATGTAATATGTTGGTTGTAGAATC
AGTCAACCCAAGCTTTTACATGCCACCCGCTCGTAAGCCGTCGATATCAG
TACTTTTGCTGTGTTTCCGTAAATCTCAGGACGTCCCTCGGCGTCTTGGA
GAAGTGGCAACAAGACCGGACTGCTTGGTTTGCCCGAGCGGACGGTACTC
TCTCCTCTTTGGCGGAAGACAACCAAACCCTCGCTCGTCGCGCCCACACA
CAGCAGAAGGTCATGGAGGAGGCGTCGGCTACACATGAAGACTTGACGGT
AGCGATGACAAGGGCACGCAGGGCGGCAGAGGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig902:214767..216700-

>mRNA_F-serratus_M_contig902.20441.1 ID=mRNA_F-serratus_M_contig902.20441.1|Name=mRNA_F-serratus_M_contig902.20441.1|organism=Fucus serratus male|type=CDS|length=1656bp|location=Sequence derived from alignment at F-serratus_M_contig902:214767..216700- (Fucus serratus male)
ATGGCGCGTGAGATGGGAAGTGGCTGGGAAGCCAACATCGCCAAACTCAT
AGAAAAGGCGAACGAGACTCTTGCAGGCTCAGCCCAGTCGCGATCCCGCA
ACTACTGCTCCTTCATTGATCGAGGGGGCAGCGGCCGAAGTTGTGGTGGA
GTACCGCCGTCGTCGTCCAGAAGCAGGGCAGCCTTTTCATTAAGTTCTGC
TCCGAAAACATTCCGAGGTGAACGGAGCGCTTCATATCGATGTGGAACTG
GAGGCTGGGATACGTCATTGCTTGGGGACCGCTCGCGGGTTCCGTTGCCG
CGTCCCGACGGGTTCCCGTCGAATCTGCCACAGGCACCCGCTCGGTTTTC
ATCCTTTTCGAGACTGGCCGAGACAAGGGTGAACGATGCCAGGATTGTTG
GCATGGAGGATCGAATCAAACTAGAAGTGCAGACATTGGTACGGAGCGAT
ATGGCGCGTGAGATGGGAAGTGGCTGGGAAGCCAACATCGCCAAACTCAT
AGAAAAGGCGAACGAGACTCTTGCAGGCTCAGCCCAGTCGCGATCCCGCA
ACTACTGCTCCTTCATTGATCGAGGGGGCAGCGGCCGAAGTTGTGGTGGA
GTACCGCCGTCGTCGTCCAGAAGCAGGGCAGCCTTTTCATTAAGTTCTGC
TCCGAAAACATTCCGAGGTGAACGGAGCGCTTCATATCGATGTGGAACTG
GAGGCTGGGATACGTCATTGCTTGGGGACCGCTCGCGGGTTCCGTTGCCG
CGTCCCGACGGGTTCCCGTCGAATCTGCCACAGGCACCCGCTCGGTTTTC
ATCCTTTTCGAGACTGGCCGAGACAAGGGTGAACGATGCCAGGATTGTTG
GCATGGAGGATCGAATCAAACTAGAAGTGCAGACATTGGTACGGAGCGAT
GTCGATCAGCGAGTATCTCTTGGTGAAAGGGCAACAGAGAGCCTACGTAA
GCACGTGAATGAAGTCGCTGAGGAGATTTCTCGCCTCGGGGGCACCGTCT
TCGAACTCAACGCCGGCGCGCGATCGCAAAAGGATACTCTGGAGCAGGTG
CTGGCGGACAGTAAGCGCAACAGGTCGATCAGCGAGTATCTCTTGGTGAA
AGGGCAACAGAGAGCCTACGTAAGCACGTGAATGAAGTCGCTGAGGAGAT
TTCTCGCCTCGGGGGCACCGTCTTCGAACTCAACGCCGGCGCGCGATCGC
AAAAGGATACTCTGGAGCAGGTGCTGGCGGACAGTAAGCGCAACAGGACG
TCCCTCGGCGTCTTGGAGAAGTGGCAACAAGACCGGACTGCTTGGTTTGC
CCGAGCGGACGGTACTCTCTCCTCTTTGGCGGAAGACAACCAAACCCTCG
CTCGTCGCGCCCACACACAGCAGAAGGTCATGGAGGAGGCGTCGGCTACA
CATGAAGACTTGACGGTAGCGATGACAAGGGCACGCAGGGCGGCAGAGGC
TGACGTCCCTCGGCGTCTTGGAGAAGTGGCAACAAGACCGGACTGCTTGG
TTTGCCCGAGCGGACGGTACTCTCTCCTCTTTGGCGGAAGACAACCAAAC
CCTCGCTCGTCGCGCCCACACACAGCAGAAGGTCATGGAGGAGGCGTCGG
CTACACATGAAGACTTGACGGTAGCGATGACAAGGGCACGCAGGGCGGCA
GAGGCT
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