mRNA_F-serratus_M_contig902.20438.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI) HSP 1 Score: 108 bits (269), Expect = 2.270e-24 Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = -1
Query: 2 VDNEESLEMSLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 229
V+ + S SLE++ERYHFRASCLSNLAEVCQLLRWSLG+FS D+VDL GVL ET SEE+ LARRGA+FLL R
Sbjct: 1340 VNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGR 1415
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE) HSP 1 Score: 103 bits (258), Expect = 6.830e-23 Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = -1
Query: 2 SLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 202
SLE++ER HFRASCLSNLAEVCQLLRWSLG+FS D+VDL GVL ET SEE+ LARRGA+FLL R
Sbjct: 1302 SLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGR 1368
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.330e-18 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = -1
Query: 2 SLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 202
S+ETRER HFRASCLSNLAEVC LLRWSL +++D+VDL +G L +ET + EEA RR +A+LLSR
Sbjct: 960 SVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSR 1026
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 9.370e-14 Identity = 33/57 (57.89%), Postives = 50/57 (87.72%), Query Frame = -1
Query: 8 HFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 178
+FR+SCLSNLAEVC LL+WSL +++QDI DL +G+L+ME ++S+EA+ ARRG+ +++
Sbjct: 130 NFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIM 186
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: K3X8E9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8E9_GLOUD) HSP 1 Score: 65.1 bits (157), Expect = 2.390e-9 Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -1
Query: 8 RASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 172
RASCLSNLAEVC LL+WSL F D++ G+L++E ++E V RRGAAFLL
Sbjct: 914 RASCLSNLAEVCVLLQWSLQPFLVDVMTCVFGILQLELDATESVVAVRRGAAFLL 968
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A1V9ZHW9_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHW9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.960e-8 Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = -1
Query: 8 LETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 199
+E+ E FRASCLSNLAEVC LLRW++ F D++ GVL +E S+ V RRGA F+L
Sbjct: 827 VESLEDATFRASCLSNLAEVCGLLRWAIHPFLADVLLCVKGVLEVERGRSDAHVALRRGAVFVL 890
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.020e-7 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1
Query: 8 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 175
FRASCLSNLAEVC LL+W++ + D+V G+L +E ++ RRGA FLL
Sbjct: 802 FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLL 857
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A8K1C9E9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9E9_PYTOL) HSP 1 Score: 58.2 bits (139), Expect = 6.090e-7 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = -1
Query: 8 RASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLA-RRGAAFLL 172
RASCLSNLAEVC LL W+L F+ D++ G+L++E + ++V++ RRGA FLL
Sbjct: 917 RASCLSNLAEVCALLGWALAPFAVDVLTCVFGILQLELDMASKSVVSVRRGAVFLL 972
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1
Query: 8 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 175
FRASCLSNLAEVC LL+WS+ + D+V G+L + +++ RRGA FLL
Sbjct: 809 FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLL 864
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A067D1X5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D1X5_SAPPC) HSP 1 Score: 57.4 bits (137), Expect = 1.160e-6 Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = -1
Query: 2 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 175
+RASCLSNLAEVC LLRW++ F D++ VL++E +E + RRGA F+L++
Sbjct: 845 YRASCLSNLAEVCGLLRWAIHPFLTDVLLCVKDVLQVERGRAEPQIALRRGAVFVLNQ 902 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig902.20438.1 >prot_F-serratus_M_contig902.20438.1 ID=prot_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=polypeptide|length=100bp MRSTPTPRSTISCENFPRDHRNSWHTSARFDKQLARKWYRSLVSSDISKDback to top mRNA from alignment at F-serratus_M_contig902:173108..173570+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig902.20438.1 ID=mRNA_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=mRNA|length=463bp|location=Sequence derived from alignment at F-serratus_M_contig902:173108..173570+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig902:173108..173570+ >mRNA_F-serratus_M_contig902.20438.1 ID=mRNA_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig902:173108..173570+ (Fucus serratus male)back to top |