mRNA_F-serratus_M_contig902.20424.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig902.20424.1
Unique NamemRNA_F-serratus_M_contig902.20424.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:15997..16445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932631.2515373-CDS-F-serratus_M_contig902:15998..161391622932631.2515373-CDS-F-serratus_M_contig902:15998..16139Fucus serratus maleCDSF-serratus_M_contig902 15999..16139 -
1690964395.0281084-CDS-F-serratus_M_contig902:15998..161391690964395.0281084-CDS-F-serratus_M_contig902:15998..16139Fucus serratus maleCDSF-serratus_M_contig902 15999..16139 -
1622932631.2763538-CDS-F-serratus_M_contig902:16316..164451622932631.2763538-CDS-F-serratus_M_contig902:16316..16445Fucus serratus maleCDSF-serratus_M_contig902 16317..16445 -
1690964395.0401323-CDS-F-serratus_M_contig902:16316..164451690964395.0401323-CDS-F-serratus_M_contig902:16316..16445Fucus serratus maleCDSF-serratus_M_contig902 16317..16445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20424.1prot_F-serratus_M_contig902.20424.1Fucus serratus malepolypeptideF-serratus_M_contig902 15999..16445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig902.20424.1

>prot_F-serratus_M_contig902.20424.1 ID=prot_F-serratus_M_contig902.20424.1|Name=mRNA_F-serratus_M_contig902.20424.1|organism=Fucus serratus male|type=polypeptide|length=90bp
KDVPIEEQIEREDPCADDDGSFEGYLSDEAPAPGTRSAASQMTIVRWCSQ
VSYTRMVSCAWRPDILTRIAFEGVFFNLIVDRLHNYLSCT
back to top

mRNA from alignment at F-serratus_M_contig902:15997..16445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig902.20424.1 ID=mRNA_F-serratus_M_contig902.20424.1|Name=mRNA_F-serratus_M_contig902.20424.1|organism=Fucus serratus male|type=mRNA|length=449bp|location=Sequence derived from alignment at F-serratus_M_contig902:15997..16445- (Fucus serratus male)
AAAGACGTACCAATAGAGGAACAAATCGAAAGGGAGGACCCGTGCGCCGA
CGACGACGGGAGTTTTGAGGGATATTTAAGCGACGAGGCGCCTGCCCCGG
GAACCAGGTCGGCGGCGTCGCAGATGACGGTGAGTCGTCTTTGGTAACCC
GCCTTATACTCTTTAGTGTTTGTTTCACGTCAAGTTGCTCGCAACAAGGT
AGGACTGGTAAGTGCGGCAGTGTCGTTTGCCAATGTTTTGAAAGAGCTCT
GTGTAATAAGTTACGGAGGCTAATAGGCCCTACTCTCGTTGCCTTCCCGT
TCGCAGATCGTTCGATGGTGCTCGCAGGTGTCATATACCCGCATGGTTTC
CTGCGCGTGGCGTCCAGACATCCTGACACGTATTGCCTTTGAAGGTGTCT
TCTTCAATCTGATTGTGGATCGTCTTCACAATTATTTATCATGTACTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig902:15997..16445-

>mRNA_F-serratus_M_contig902.20424.1 ID=mRNA_F-serratus_M_contig902.20424.1|Name=mRNA_F-serratus_M_contig902.20424.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig902:15997..16445- (Fucus serratus male)
AAAGACGTACCAATAGAGGAACAAATCGAAAGGGAGGACCCGTGCGCCGA
CGACGACGGGAGTTTTGAGGGATATTTAAGCGACGAGGCGCCTGCCCCGG
GAACCAGGTCGGCGGCGTCGCAGATGACGAAAGACGTACCAATAGAGGAA
CAAATCGAAAGGGAGGACCCGTGCGCCGACGACGACGGGAGTTTTGAGGG
ATATTTAAGCGACGAGGCGCCTGCCCCGGGAACCAGGTCGGCGGCGTCGC
AGATGACGATCGTTCGATGGTGCTCGCAGGTGTCATATACCCGCATGGTT
TCCTGCGCGTGGCGTCCAGACATCCTGACACGTATTGCCTTTGAAGGTGT
CTTCTTCAATCTGATTGTGGATCGTCTTCACAATTATTTATCATGTACTA
TCGTTCGATGGTGCTCGCAGGTGTCATATACCCGCATGGTTTCCTGCGCG
TGGCGTCCAGACATCCTGACACGTATTGCCTTTGAAGGTGTCTTCTTCAA
TCTGATTGTGGATCGTCTTCACAATTATTTATCATGTACT
back to top