mRNA_F-serratus_M_contig90.20390.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.890e-34 Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MA +L ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS VE V LGLYI RGDNIAVIGE DE AD +DLS +RA P+KP+ H
Sbjct: 1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI) HSP 1 Score: 130 bits (326), Expect = 8.110e-34 Identity = 65/85 (76.47%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 73 GNLKGYDHTINLVLEGCSERIYSQARGVEQ-------------VQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
GNLKGYDHTINLVLEGC ERIYSQ+RGVEQ VQLGLYICRGDNIAVIGE DE+ DASKDLSR+RA+PLKPVTH
Sbjct: 35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR) HSP 1 Score: 127 bits (318), Expect = 6.410e-33 Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPV 282
MAA + + + KLVSVITGDGR ILGNLKG+D TINLVL+ ER+YS+ +G+E+VQLGLYI RGDN+A+IGE DE D DL+ RADPL P+
Sbjct: 1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEEVQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE) HSP 1 Score: 122 bits (305), Expect = 5.190e-31 Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
M+ SL L G++VSV+T DGR I+G LKGYD TIN++LE ER++S GVEQV LGLYI RGDN+AVIGE DE D S DLS++ ADPL P++H
Sbjct: 1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQVALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL) HSP 1 Score: 121 bits (303), Expect = 1.020e-30 Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MA+ L+ VSVIT DGRQI+G LKG+D TINL+L+ ER+Y+ A GVEQV LGLYI RGDNIA+IGE DE D++ DLS V+A+PL PV H
Sbjct: 1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQVVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.080e-30 Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MAA+L++L+ +++ VIT DGR I+G LKG+D T N++L+ C ER++S GVEQV LGLYI RGDNIAV+GE DE ADA+ DLS ++ D LKPV H
Sbjct: 25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT) HSP 1 Score: 119 bits (298), Expect = 5.580e-30 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MA +L+ G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS + GVEQV LGLYI RGDN+AV+GE DE D + S +RA+PL PV H
Sbjct: 1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQVFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC) HSP 1 Score: 119 bits (297), Expect = 7.840e-30 Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MAASL+ VSVIT DGR I+G LKG+D TINL+L+ ER+YS + GVEQV LGLYI RGDN+AVIGE D+ D DLS ++A+PL PV H
Sbjct: 1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQVVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A) HSP 1 Score: 119 bits (297), Expect = 7.840e-30 Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MA +++ VSVIT DGR I+G LKG+D T+NL+L+ ER++S A+GVEQV LGLYI RGDNIAVIGE D+ D+S D+S +RA+PL PV H
Sbjct: 1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQVLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.080e-29 Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 288
MA +LQ+ V +IT DGR I+GNL+GYD T NL+LE C ERI++ GVE+V LGLYI RGDN+AVIGE DE + DLS +RA PLKP+ H
Sbjct: 12 MAGALQDWLNHAVCIITNDGRNIVGNLRGYDQTTNLILENCHERIFAPDEGVEEVPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig90.20390.1 >prot_F-serratus_M_contig90.20390.1 ID=prot_F-serratus_M_contig90.20390.1|Name=mRNA_F-serratus_M_contig90.20390.1|organism=Fucus serratus male|type=polypeptide|length=97bp MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARback to top mRNA from alignment at F-serratus_M_contig90:211709..214236- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig90.20390.1 ID=mRNA_F-serratus_M_contig90.20390.1|Name=mRNA_F-serratus_M_contig90.20390.1|organism=Fucus serratus male|type=mRNA|length=2528bp|location=Sequence derived from alignment at F-serratus_M_contig90:211709..214236- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig90:211709..214236- >mRNA_F-serratus_M_contig90.20390.1 ID=mRNA_F-serratus_M_contig90.20390.1|Name=mRNA_F-serratus_M_contig90.20390.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig90:211709..214236- (Fucus serratus male)back to top |