mRNA_F-serratus_M_contig90.20389.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20389.1
Unique NamemRNA_F-serratus_M_contig90.20389.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Match: D7FKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG8_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 1.040e-143
Identity = 262/590 (44.41%), Postives = 341/590 (57.80%), Query Frame = 1 
Query:  124 KVTVRYSGDLQEARQVKGEVWFAVKGRAVLSRREHHRQLFHGDDTVFPAAHVTASFHVV---PRWSVPGGESEVKNGSDNTHPSKENPDMLLRAVQTASYFAPVAALPAGIHVMCHVGRTSKDDDNTTVSYGGQGRPIWSASASRSWSGLWKDLWADVDELRQAERLGWQTPCLRLLHETATSLGVTEIASVSKGVGSDGWARVLCEKSSSPLCTLASGGDSALGD-VMWRHLGTEA-AEGT---VTERILAVSGGEDVNPAFASVLACVSEDNQVSITAQAHGVLASGALSGYNVG---PAQRIAKNEPSTSSDEDTDDEGTDFSKAEFVDDSLL-LDVTEGRWFGTATMEELPGGGLHRHVRTKISLSCHGMGCFAEGIGGRGIRDDSD-HELCTVLLSQHVPQEAYVDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSSQHLVNFKVLVGLP-RNEDKVERTANVHFELTLPVHLRYPDPSCKRRGEDCEHYAWVEVPPPVVGVRCGGALGTENFASVLPITPPTPVVLRVPRGILWHRDLVVWVTIGVAMLGMLFTMRTLCTLPVLIDAGRKRRS 1851
            K TVRY GD+Q+ARQV G++WFAV G+A+L+R +  R +          AH  AS HV+   P+ S          G+ +   S E+  +L++A Q +  FA V ALP GIHVMC+V  ++ D D    +    G+P   A+ +  WS LW+D+     E  + +RL WQ PCL LL +  + L    I+S++      GWA V C  SS+ +C LASGG    G  V W HL  +A A GT   V + +L  S G     ++ASV A    D +V + ++AH VL  G LSGY++    P   +  N+ S+  + D          A FVD S   +DV   RW G   +  LPGGGLHRHVR K    C G  C  EG+  RG   DSD  E C VLL+QHVPQ AY+D+DEVKARH FD+++S P    V VETF+G PIDVELP+SVS QHLVNF + V +  R+  +     ++  +LTLPVHLRYPDP C+RRGE+CE YAWVEVPPP+  +RCG A     F  VLP  PP  V LRVPRGI WHRDLV+  T G A LG L+T+ TL    V++  G+ R S
Sbjct:   12 KTTVRYDGDVQDARQVDGKIWFAVDGQAILTREQQTRGISKLRPAPGTTAHTMASAHVIVGGPQLSSSYDADPAGGGTASGLLSPESA-LLIKAAQVSQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAGDAGGKP---AATAGDWSALWRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQ-ELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNALIGNDKSSDGEPDRGRPKNVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFDARCTGNAC--EGLSERGESQDSDASEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPVGRRVGVETFEGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGREGEARSIQADLTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQFFPVLPARPPVGVALRVPRGIAWHRDLVMMGTTGAAALGCLYTIYTLL---VVVPTGKARGS 591
[Close]
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Match: A0A6H5L0R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R2_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 6.640e-100
Identity = 218/581 (37.52%), Postives = 289/581 (49.74%), Query Frame = 1 
Query:  124 KVTVRYSGDLQEARQVKGEVWFAVKGRAVLSRREHHRQLFHGDDTVFPAAHVTASFHVVPRWSVPGGESEVKNGSDNTHPSKENPD--MLLRAVQTASYFAPVAALPAGIHVMCHVGRTSKDDDNTTVSYGGQGRPIWSASASRSWSGLWKDLWADVDELRQAERLGWQTPCLRLLHETATSLGVTEIASVSKGVGSDGWARVLCEKSSSPLCTLASGGDSALG-DVMWRHLGTEA---AEGT-VTERILAVSGGEDVNPAFASVLACVSEDNQVSITAQAHGVLASGALSGYNVG---PAQRIAKNEPSTSSDEDTDDEGTDFSKAEFVDDSLL-LDVTEGRWFGTATMEELPGGGLHRHVR------TKISLSCH----------------GMGCF--AEGIGG-----------------------------------------------RGIRDDSDH-ELCTVLLSQHVPQEAYVDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSSQHLVNFKVLVGLPRNEDKVERTAN-VHFELTLPVHLRYPDPSCKRRGEDCEHYAWVEV 1614
            K T+ Y GD+Q+ARQ+ G++WFAV G+A+L+R +  R +          AH  AS HVV     P    +       T     +P+  +L++A Q +  FA V ALP GIHVMC+V  ++ D D    +    G+P+ +A     WS LW+D+ +   +  +A+RL WQTPCL LL + A+SL    I+S++      GWA V C  SS+ +C LASGG    G  V W HL  +A   A G  VT+ +L  S G                  +V + ++AH +L  G LSGY++    P   +  N  S+  + D          A FVD S    DV   RW G   +  LPGGGLHRHVR      + I LS H                G GC   AE IG                                                RG   D D  ELC VLL+QHVP+ AY+D+DEVKARH FD+++S P    V VETF+G PIDVELP+SVS QHLVNF + V +   +  +E  A+ +  +LTLPVHLRYPDP C RRGE+CE YAWV+ 
Sbjct:   12 KTTLLYDGDVQDARQIDGKIWFAVDGQAILTREQQTRGISQLRPASGTTAHTMASAHVVAGGLQPSSSYDADPAGGGTASGLSSPESALLMKAAQVSQTFAAVTALPPGIHVMCYVPPSTDDADEKPAAVDAGGKPVATAGG---WSALWRDIRSGTGQAEEAKRLAWQTPCLSLLGDAASSLSSAAISSLADSASRGGWALVPCASSSNLVCELASGGAKGDGGQVAWLHLAEDAQAPATGVAVTDSLLLTSLG----------------GAEVEVISEAHRILLDGVLSGYDLSVAPPNNALLGNVKSSDGEPDRGRPMKVDEAAVFVDHSTAPADVVGQRWRGDVAVVGLPGGGLHRHVRYSFCRASTIVLSAHHSHDRLSAIMKKDARTGRGCCERAELIGDGKIGTWLPLCGDLQIMSAGGFHKHGSQRVRVKFNARCTGKACDDLSERGESQDGDALELCEVLLAQHVPRGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFQGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGLEGEASSIQADLTLPVHLRYPDPGCDRRGEECEGYAWVKA 573
[Close]
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Match: A0A835YP07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP07_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.480e-14
Identity = 71/221 (32.13%), Postives = 95/221 (42.99%), Query Frame = 1 
Query: 1249 DDSDHELCTVLLSQHVPQEAYVDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSSQHLVNFKVLVGL-PRNEDKVERTANVHFELTLPVHLRYPDPSCKRRGEDCEHYAWVEVPPPVVGVRCGGALGTENFASVLPITPPTPVVLRVPRGILWHRDLVVWVTIGVAMLGMLFTMRTLCTLPVLIDAGRKRRSKIHID*ACSFPKARAFSTL 1908
            D  D   C + L Q +P+ AYVDIDE ++R  +    +      V V +  G PIDVELPAS S+ H++ F       P   D    T      L+LPVH+RY  P           +A V + PP   + CGGA        + PI PP P+ LRVP      R  V         LG L  +  +    +    GR+RR  +      S P + A S L
Sbjct:  358 DGGDTGSCLLTLVQALPRGAYVDIDEARSRWRYFNSTTSTGDALVAVTSRGGAPIDVELPASASTPHVLAFSTAFPCAPATADAARVT------LSLPVHVRYARPLASGT------HASVALAPPAAYLSCGGA---PVLLPLRPIAPPPPLRLRVPAARAHDRAAVAXXXXXXXXLGTLAALWAM----LACSGGRRRRRSVARSAGGSIPVSLAKSGL 559
[Close]
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Match: UPI00142591A5 (phosphatidylinositol-glycan biosynthesis class X protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142591A5)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-7
Identity = 66/265 (24.91%), Postives = 108/265 (40.75%), Query Frame = 1 
Query: 1144 ELPGGGLHRHVRTKISLSCHGMGCFAEGIGGRGIRDDSDHELCTVLLSQHVPQEAYVDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSSQH-LVNFKVLVGLPRNEDKVERTANVHFELTLPVHLRYPDPSCKRRGEDCEHYAWVEVPPPVVGVRCG---GALGTENFAS------------------VLPITPPTPVVLRVPRGILWHRDLVVWV--TIGVAMLGMLFTMRTLCTLPVLIDAGRKRRSKIHID 1866
            E+   G HR++ TK+ L                  D  +   C +L+  H+P  A+VD+D+++ R  F     GP       +    + IDVE P  +SS H +++F+  V  P +       +N + E   P+HLRY  PS         ++A V + PP + VRC    G L  +   +                  +L       V+L+VP G   H D VV +  T+    +G+L+         + I     +  K+H+D
Sbjct:   67 EIHLSGFHRYLETKVQLQLSSQ-------------DFENSLTCHILMIDHLPSGAFVDLDQLENRLEF----GGP-------QVLALEHIDVEKPQYLSSGHSILSFQTKVFPPTS-------SNFNIETAFPIHLRYHRPS----NHPTVNFANVTIHPPDMMVRCDSDHGELSHQKLDTRIILGLCTAMKKNLCHWQLLQRNESASVILQVPVG--QHSDTVVVLLGTVACVFVGVLYL--------IYILLKTTQEQKLHLD 286
[Close]
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Match: A0A7S2XXY9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXY9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-6
Identity = 70/248 (28.23%), Postives = 104/248 (41.94%), Query Frame = 1 
Query: 1075 EFVDDSLLLDVTEG-RWFGTATMEELPGGGLHRHVRTKI--SLSCHGMGCFAEGIGGRGIRDDSDHELCTVLLSQHVPQEAYVDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSS--QHLVNFKVLVGLPRNEDKVERTANVHFELTLPVHLRYPDPSCKRRGEDCEHYAWVEVPPPVVGVRC---GGALGTENFAS----VLPITPPTPVVLRVPRGILWHRDLVVWVTIGVAMLG 1782
            E VD+    D   G  WF  A  ++    G HR +   I    S H  G   E   G+      D  LC++LL   +P+ AYVD++E+K  H +++       G V V     + ID+E PA+      H +  K +     +  +      V   + LPVHLRYP P+    G   E      + PPVV +     G        +S     LP     PV+L VP G       V+ +T+ V+++G
Sbjct:   99 EEVDEDAEDDPNRGVGWFKDAKEDK----GFHRLIVASIHGQASYHQDGYIIEQTRGK------DRILCSILLLLDIPKGAYVDLEEMKHSHEYNVK------GQVKVMA-PPEVIDIEAPATSKKARHHTIALKYVTHALNSGLEFF----VASAIRLPVHLRYPAPT--EGGRPVE----TLLHPPVVYISTLDYGNDRALPQVSSHPVAQLPFKKQPPVILLVPSGQKELTTFVITITVAVSVIG 319
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKG8_ECTSI1.040e-14344.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0R2_9PHAE6.640e-10037.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YP07_9STRA2.480e-1432.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00142591A51.170e-724.91phosphatidylinositol-glycan biosynthesis class X p... [more]
A0A7S2XXY9_9STRA1.030e-628.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:205993..210585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog112098.XP_008605438.1
Preferred namePIGX
KEGG koko:K07541
KEGG ReactionR05919
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.GPI anchor biosynthetic process
EggNOG OGs2CY9W@1,2S32M@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons6
Model size2033
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20389.1prot_F-serratus_M_contig90.20389.1Fucus serratus malepolypeptideF-serratus_M_contig90 206104..210421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932622.4344733-UTR-F-serratus_M_contig90:205992..2061031622932622.4344733-UTR-F-serratus_M_contig90:205992..206103Fucus serratus maleUTRF-serratus_M_contig90 205993..206103 +
1690964390.5434694-UTR-F-serratus_M_contig90:205992..2061031690964390.5434694-UTR-F-serratus_M_contig90:205992..206103Fucus serratus maleUTRF-serratus_M_contig90 205993..206103 +
1622932622.577776-UTR-F-serratus_M_contig90:210421..2105851622932622.577776-UTR-F-serratus_M_contig90:210421..210585Fucus serratus maleUTRF-serratus_M_contig90 210422..210585 +
1690964390.623584-UTR-F-serratus_M_contig90:210421..2105851690964390.623584-UTR-F-serratus_M_contig90:210421..210585Fucus serratus maleUTRF-serratus_M_contig90 210422..210585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932622.4549608-CDS-F-serratus_M_contig90:206103..2062501622932622.4549608-CDS-F-serratus_M_contig90:206103..206250Fucus serratus maleCDSF-serratus_M_contig90 206104..206250 +
1690964390.5576828-CDS-F-serratus_M_contig90:206103..2062501690964390.5576828-CDS-F-serratus_M_contig90:206103..206250Fucus serratus maleCDSF-serratus_M_contig90 206104..206250 +
1622932622.4746652-CDS-F-serratus_M_contig90:207271..2078731622932622.4746652-CDS-F-serratus_M_contig90:207271..207873Fucus serratus maleCDSF-serratus_M_contig90 207272..207873 +
1690964390.5676608-CDS-F-serratus_M_contig90:207271..2078731690964390.5676608-CDS-F-serratus_M_contig90:207271..207873Fucus serratus maleCDSF-serratus_M_contig90 207272..207873 +
1622932622.4922454-CDS-F-serratus_M_contig90:208734..2090471622932622.4922454-CDS-F-serratus_M_contig90:208734..209047Fucus serratus maleCDSF-serratus_M_contig90 208735..209047 +
1690964390.5777423-CDS-F-serratus_M_contig90:208734..2090471690964390.5777423-CDS-F-serratus_M_contig90:208734..209047Fucus serratus maleCDSF-serratus_M_contig90 208735..209047 +
1622932622.523269-CDS-F-serratus_M_contig90:209189..2093481622932622.523269-CDS-F-serratus_M_contig90:209189..209348Fucus serratus maleCDSF-serratus_M_contig90 209190..209348 +
1690964390.5883849-CDS-F-serratus_M_contig90:209189..2093481690964390.5883849-CDS-F-serratus_M_contig90:209189..209348Fucus serratus maleCDSF-serratus_M_contig90 209190..209348 +
1622932622.539021-CDS-F-serratus_M_contig90:209703..2099821622932622.539021-CDS-F-serratus_M_contig90:209703..209982Fucus serratus maleCDSF-serratus_M_contig90 209704..209982 +
1690964390.6011398-CDS-F-serratus_M_contig90:209703..2099821690964390.6011398-CDS-F-serratus_M_contig90:209703..209982Fucus serratus maleCDSF-serratus_M_contig90 209704..209982 +
1622932622.5570552-CDS-F-serratus_M_contig90:210163..2104211622932622.5570552-CDS-F-serratus_M_contig90:210163..210421Fucus serratus maleCDSF-serratus_M_contig90 210164..210421 +
1690964390.6124928-CDS-F-serratus_M_contig90:210163..2104211690964390.6124928-CDS-F-serratus_M_contig90:210163..210421Fucus serratus maleCDSF-serratus_M_contig90 210164..210421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20389.1

>prot_F-serratus_M_contig90.20389.1 ID=prot_F-serratus_M_contig90.20389.1|Name=mRNA_F-serratus_M_contig90.20389.1|organism=Fucus serratus male|type=polypeptide|length=586bp
MGKPKVTVRYSGDLQEARQVKGEVWFAVKGRAVLSRREHHRQLFHGDDTV
FPAAHVTASFHVVPRWSVPGGESEVKNGSDNTHPSKENPDMLLRAVQTAS
YFAPVAALPAGIHVMCHVGRTSKDDDNTTVSYGGQGRPIWSASASRSWSG
LWKDLWADVDELRQAERLGWQTPCLRLLHETATSLGVTEIASVSKGVGSD
GWARVLCEKSSSPLCTLASGGDSALGDVMWRHLGTEAAEGTVTERILAVS
GGEDVNPAFASVLACVSEDNQVSITAQAHGVLASGALSGYNVGPAQRIAK
NEPSTSSDEDTDDEGTDFSKAEFVDDSLLLDVTEGRWFGTATMEELPGGG
LHRHVRTKISLSCHGMGCFAEGIGGRGIRDDSDHELCTVLLSQHVPQEAY
VDIDEVKARHSFDLVASGPTWGNVVVETFKGQPIDVELPASVSSQHLVNF
KVLVGLPRNEDKVERTANVHFELTLPVHLRYPDPSCKRRGEDCEHYAWVE
VPPPVVGVRCGGALGTENFASVLPITPPTPVVLRVPRGILWHRDLVVWVT
IGVAMLGMLFTMRTLCTLPVLIDAGRKRRSKIHID*
back to top

mRNA from alignment at F-serratus_M_contig90:205993..210585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20389.1 ID=mRNA_F-serratus_M_contig90.20389.1|Name=mRNA_F-serratus_M_contig90.20389.1|organism=Fucus serratus male|type=mRNA|length=4593bp|location=Sequence derived from alignment at F-serratus_M_contig90:205993..210585+ (Fucus serratus male)
TATAAATGTGGTATGGGCTGGAAGCTTAGAGAGAGTGCCCGAAAACCGCC
TTTGGAGGGATAGCTGTTCTATAGAAGGTTCGCAAGACTCGACGAATGAA
GTTCGTTTGTCATGGGCAAGCCAAAAGTCACCGTTCGATATTCCGGGGAC
TTGCAAGAAGCTCGCCAAGTCAAGGGTGAAGTTTGGTTTGCCGTCAAAGG
ACGAGCAGTTCTCAGTCGCCGTGAACATCACCGCCAACTTTTCCACGGAG
ATGATACGGTGAGTCGACGCCAAGGCTGGAATGAGCTCGAGGCGTGGACG
TCTCAAGTATTCAACCAGCTGCACCAGTGAGTTGCCTGTTTCTTCTTTTA
AGGGGTTGTCGAACTAACAGTGGTATCATCAACAGACATATTATATTACT
GCTGTAGTGCGATATGAATAGCGTGTATTAATACGGTAGTAGTGCGAACT
TTATCACACTGATGTCGACGGTAGGACCGGGTTCGAATCCCGCTGAGAAA
GCTTCAAGCTTCTTCACCTCACCGAATTCCTGGGCAGAATACAGGTATCG
GTTGGAGATGATGATGGTGTTAGAAAAAGAGTACGATAATGTCCCTACAA
TTTAAGGCACTCAAACTTCAATCATCTAACTAACTAGGCCGTTTGATAAC
AGTCTATCCATGTGTGTTGTGTTTTCTTCCCATCCATTCTGGACATCAAG
TTTGTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGAT
TTCTCACCCACCTTCCTTCTGCGGTACATGCCTTACTTTTTATCGCGAGA
AGGATTCAGCCATTCCTTTCTCTCGTCGACCGTGAAGTCGAGTTTTGTGT
ACTAACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGTTTTT
TAGTTTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCA
ACGTGTCAGAAGGTTACGAGGTACCTACTGCGCTACCGGGGAAATTTTAT
AAAAACTGACTACCGACTGGTAATTGTCAAATGACTTTTACCCTGTGGCG
TAATACGATAACAGTCTATCCATGTTGTGGGAAACTTTATAATAACTGAC
AACCGAGTGGTAGTTGTCAAATGACTTTTACTCTGTGGCGTAATACTAAC
AATAATATTAATAATAATATAAATAGTAACTTCATAACATTAACATTATC
GTATCGATGAGGAGAGGCCTCCTGGACGCTCGCAAAGGCGATGACCTGGC
ACCTTGTACGTTCTCGTCGCTTCGCACAGGTTTTTCCTGCTGCTCATGTT
ACGGCCTCATTCCATGTAGTACCTCGCTGGTCTGTGCCCGGCGGGGAGTC
AGAAGTGAAAAACGGTAGTGACAACACGCATCCTTCGAAAGAAAACCCGG
ACATGCTTCTGAGGGCGGTCCAAACAGCCTCGTATTTTGCCCCGGTTGCG
GCCCTTCCCGCGGGCATTCACGTTATGTGCCACGTGGGACGAACCTCTAA
AGATGATGATAATACGACAGTATCGTACGGTGGCCAAGGGAGGCCGATCT
GGTCTGCATCCGCGTCCAGGAGTTGGTCGGGATTGTGGAAAGATCTCTGG
GCAGACGTGGACGAACTTCGACAGGCTGAGCGTTTGGGTTGGCAAACACC
GTGTCTACGGCTCCTCCACGAAACAGCCACTTCATTGGGCGTGACAGAGA
TCGCCTCTGTTAGCAAAGGGGTGGGAAGCGATGGATGGGCACGCGTTCTA
TGCGAGAAATCCAGCAGCCCGCTGTGCACACTTGCCAGCGGTGGAGATAG
TGCCCTCGGGGACGTGATGTGGAGACACCTTGGTACAGAAGCTGCGGAGG
GCACCGTGACCGAGCGTATACTGGCCGTATCGTGAGTTGCCTTCAAAAGT
AATGGTTGACTTGGGGGTTGCTTCATAATGCTGGGTGGTGTTGTGCGCAA
ACAATTCTTGTATCACTGTATGAGAGAAATGTTGTTCGCTCATCCCCGAA
CACCCAGACATGCAGATTCATAATACATCATGCATGCCGGTCGACCCCGG
TAGCTCAGTAGGCACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCG
ATCCCGGCAAACGGGATTTTTCTCACTAAAAACTAAAAAACCAAAATAAA
AATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTACACGAAATTCGAC
TTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGACAAAAA
TCAAGGCACGCACCGCAGAAGGAAGGTGGATGAAAAATCCTGTGTGACCT
TCCTCCTGTGTGCCCCGGCTGGTACGTCCAACTTGATGTCCAGAATGGAT
GGGAAGAAAACACACACAACACATTTTACGTAAACTTTGTGACTTGTATA
GCTCGTACACATCCACTGGTTATTCTGCCGAAAGAATACCCTCGCTTTTC
ATCTAGTCTTTACGTAGAAATACGAGAAACAGCTCCCTCTATACTGGGAA
ATTGTTTTAATAATTCCGACCCTTCCTCAGCCGATAATACAACCCCACTA
GCCTTCAACGAGCTTCCCTGATGGTACCAAACCTTGCAAACCTTGTAAGC
ACGGGCTGATCGATCGATCGTGCGTAACCGTACTCCTACCTGAATTTGGT
TTCGATTGCTCCAGAACTGTTCGCCTGATCAGTAAGATATTTATTTTCTT
GTCCTCGCCTCCATCTCCTTCCTGTGGTATTTTCGTTTTCAGCGGTGGTG
AAGACGTCAACCCAGCATTCGCGTCGGTTTTAGCATGCGTCTCGGAAGAC
AATCAAGTCTCCATCACGGCCCAAGCTCACGGCGTCTTGGCATCAGGGGC
TCTTTCAGGCTACAACGTAGGCCCCGCACAGCGTATTGCGAAGAACGAGC
CCTCAACATCTTCCGACGAAGACACGGACGACGAGGGGACGGATTTTTCC
AAGGCGGAGTTCGTTGACGACTCATTGCTCTTGGATGTTACTGAAGGGCG
CTGGTTTGGGACGGCGACTATGGAGGAGCTCCCAGGAGGAGGGCTGCACA
GACATGTACCAAGTGCCGAAGTGATACTCTGTATCTCACTTTGATTTCTT
GGACAATCGCTGACTCGATTTGCGACGCAGTCCTGAATATTGTGAGGAGA
TGTCTTCCAACCTCAAAAACTAGTCATTCCGCGTTTTCACCCTCCAGGTC
AGGACTAAAATTTCGCTTAGCTGTCATGGTATGGGATGCTTTGCTGAAGG
AATTGGTGGGCGAGGCATTCGGGACGATAGCGATCATGAATTGTGCACCG
TTCTTCTGTCACAACACGTCCCTCAGGAGGCGTACGTCGATATCGACGAA
GTCAAGGTTAGTAGAGATAGATTGACAGCAAAAACCACGACGATGTTGAG
CATCTTCATCGGCCGATATATGTTCACGCACGCGTGATTGGTTTTCTGGG
AGCTTTTTTGTCGAGCAAGCGCGGTATAAATTCCACGATAAACACGAAAA
CGATCGCACCAGCTGCCGCGTTTGAGGACCTCAAGCTGACCTAGATCCGC
CAATTCCGGTATCTGTGCGATGAGAGCTACCGGGTGTTTTCACTCTCTCT
ATCAAAGCTTTCTCAGTTGACCGGGTAACCTCCGCCACGGTTCGATTTAT
GAGGCCATGTCAAGCTCTTACCCTCTGTTTCCCCCTTCCATTGTTGACCC
CGCATCTCTAGGCGCGGCATAGTTTTGATCTCGTCGCGTCGGGCCCAACC
TGGGGCAACGTCGTCGTGGAGACCTTTAAGGGACAGCCGATCGATGTCGA
GCTACCGGCGTCGGTCTCTAGTCAGCATCTAGTTAATTTCAAGGTCTTGG
TTGGCTTGCCAAGGAACGAAGACAAGGTGGAACGAACGGCAAACGTCCAC
TTCGAGCTCACGCTTCCAGTTCACCTCAGATACCCTGATCCGTCCTGCAA
GCGTCGAGGGGAAGATTGCGAACACTACGCATGGGTGGAGGTGAGGCAGC
CATGTATCACTTGTTTTGTCCATCAAAGTCGCGTTGCAGAAGATGGTTGG
GCGGGGCGAAGTCCTGATCGTTTAACGTTTAATGTTCAAAGCGTATAGGA
GGTGGACTATCCACTTCGGCGTCCTTCAAGTTTACACAATTGTATTCTGT
CTTTCTCTGTCCGCTGTTCAGGTACCACCGCCGGTTGTGGGTGTTCGGTG
TGGAGGTGCGCTTGGGACAGAGAATTTCGCCTCCGTGCTCCCGATTACGC
CGCCCACACCGGTAGTGCTGCGCGTTCCCCGCGGAATCTTGTGGCACAGA
GACTTGGTTGTGTGGGTTACCATAGGAGTGGCTATGCTTGGAATGTTGTT
CACGATGCGCACACTTTGCACGTTGCCAGTATTAATAGATGCCGGCCGTA
AGAGACGCTCAAAAATCCATATTGATTAGGCATGCAGTTTTCCGAAAGCG
CGCGCGTTTTCGACGCTGGCACAGTGACCATGCATACATGAATGTACCCT
GGTGCCATTTTCTACACGAGAAAGATTTAGCCCGAACCAGCAAACGCGCT
GGGGAACCCCGTAGAAATCCACTCTTGAAATCTAATGACCTTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig90:205993..210585+

>mRNA_F-serratus_M_contig90.20389.1 ID=mRNA_F-serratus_M_contig90.20389.1|Name=mRNA_F-serratus_M_contig90.20389.1|organism=Fucus serratus male|type=CDS|length=3516bp|location=Sequence derived from alignment at F-serratus_M_contig90:205993..210585+ (Fucus serratus male)
ATGGGCAAGCCAAAAGTCACCGTTCGATATTCCGGGGACTTGCAAGAAGC
TCGCCAAGTCAAGGGTGAAGTTTGGTTTGCCGTCAAAGGACGAGCAGTTC
TCAGTCGCCGTGAACATCACCGCCAACTTTTCCACGGAGATGATACGATG
GGCAAGCCAAAAGTCACCGTTCGATATTCCGGGGACTTGCAAGAAGCTCG
CCAAGTCAAGGGTGAAGTTTGGTTTGCCGTCAAAGGACGAGCAGTTCTCA
GTCGCCGTGAACATCACCGCCAACTTTTCCACGGAGATGATACGGTTTTT
CCTGCTGCTCATGTTACGGCCTCATTCCATGTAGTACCTCGCTGGTCTGT
GCCCGGCGGGGAGTCAGAAGTGAAAAACGGTAGTGACAACACGCATCCTT
CGAAAGAAAACCCGGACATGCTTCTGAGGGCGGTCCAAACAGCCTCGTAT
TTTGCCCCGGTTGCGGCCCTTCCCGCGGGCATTCACGTTATGTGCCACGT
GGGACGAACCTCTAAAGATGATGATAATACGACAGTATCGTACGGTGGCC
AAGGGAGGCCGATCTGGTCTGCATCCGCGTCCAGGAGTTGGTCGGGATTG
TGGAAAGATCTCTGGGCAGACGTGGACGAACTTCGACAGGCTGAGCGTTT
GGGTTGGCAAACACCGTGTCTACGGCTCCTCCACGAAACAGCCACTTCAT
TGGGCGTGACAGAGATCGCCTCTGTTAGCAAAGGGGTGGGAAGCGATGGA
TGGGCACGCGTTCTATGCGAGAAATCCAGCAGCCCGCTGTGCACACTTGC
CAGCGGTGGAGATAGTGCCCTCGGGGACGTGATGTGGAGACACCTTGGTA
CAGAAGCTGCGGAGGGCACCGTGACCGAGCGTATACTGGCCGTATCGTTT
TTCCTGCTGCTCATGTTACGGCCTCATTCCATGTAGTACCTCGCTGGTCT
GTGCCCGGCGGGGAGTCAGAAGTGAAAAACGGTAGTGACAACACGCATCC
TTCGAAAGAAAACCCGGACATGCTTCTGAGGGCGGTCCAAACAGCCTCGT
ATTTTGCCCCGGTTGCGGCCCTTCCCGCGGGCATTCACGTTATGTGCCAC
GTGGGACGAACCTCTAAAGATGATGATAATACGACAGTATCGTACGGTGG
CCAAGGGAGGCCGATCTGGTCTGCATCCGCGTCCAGGAGTTGGTCGGGAT
TGTGGAAAGATCTCTGGGCAGACGTGGACGAACTTCGACAGGCTGAGCGT
TTGGGTTGGCAAACACCGTGTCTACGGCTCCTCCACGAAACAGCCACTTC
ATTGGGCGTGACAGAGATCGCCTCTGTTAGCAAAGGGGTGGGAAGCGATG
GATGGGCACGCGTTCTATGCGAGAAATCCAGCAGCCCGCTGTGCACACTT
GCCAGCGGTGGAGATAGTGCCCTCGGGGACGTGATGTGGAGACACCTTGG
TACAGAAGCTGCGGAGGGCACCGTGACCGAGCGTATACTGGCCGTATCCG
GTGGTGAAGACGTCAACCCAGCATTCGCGTCGGTTTTAGCATGCGTCTCG
GAAGACAATCAAGTCTCCATCACGGCCCAAGCTCACGGCGTCTTGGCATC
AGGGGCTCTTTCAGGCTACAACGTAGGCCCCGCACAGCGTATTGCGAAGA
ACGAGCCCTCAACATCTTCCGACGAAGACACGGACGACGAGGGGACGGAT
TTTTCCAAGGCGGAGTTCGTTGACGACTCATTGCTCTTGGATGTTACTGA
AGGGCGCTGGTTTGGGACGGCGACTATGGAGGAGCTCCCAGGAGGAGGGC
TGCACAGACATCGGTGGTGAAGACGTCAACCCAGCATTCGCGTCGGTTTT
AGCATGCGTCTCGGAAGACAATCAAGTCTCCATCACGGCCCAAGCTCACG
GCGTCTTGGCATCAGGGGCTCTTTCAGGCTACAACGTAGGCCCCGCACAG
CGTATTGCGAAGAACGAGCCCTCAACATCTTCCGACGAAGACACGGACGA
CGAGGGGACGGATTTTTCCAAGGCGGAGTTCGTTGACGACTCATTGCTCT
TGGATGTTACTGAAGGGCGCTGGTTTGGGACGGCGACTATGGAGGAGCTC
CCAGGAGGAGGGCTGCACAGACATGTCAGGACTAAAATTTCGCTTAGCTG
TCATGGTATGGGATGCTTTGCTGAAGGAATTGGTGGGCGAGGCATTCGGG
ACGATAGCGATCATGAATTGTGCACCGTTCTTCTGTCACAACACGTCCCT
CAGGAGGCGTACGTCGATATCGACGAAGTCAAGGTCAGGACTAAAATTTC
GCTTAGCTGTCATGGTATGGGATGCTTTGCTGAAGGAATTGGTGGGCGAG
GCATTCGGGACGATAGCGATCATGAATTGTGCACCGTTCTTCTGTCACAA
CACGTCCCTCAGGAGGCGTACGTCGATATCGACGAAGTCAAGGCGCGGCA
TAGTTTTGATCTCGTCGCGTCGGGCCCAACCTGGGGCAACGTCGTCGTGG
AGACCTTTAAGGGACAGCCGATCGATGTCGAGCTACCGGCGTCGGTCTCT
AGTCAGCATCTAGTTAATTTCAAGGTCTTGGTTGGCTTGCCAAGGAACGA
AGACAAGGTGGAACGAACGGCAAACGTCCACTTCGAGCTCACGCTTCCAG
TTCACCTCAGATACCCTGATCCGTCCTGCAAGCGTCGAGGGGAAGATTGC
GAACACTACGCATGGGTGGAGGCGCGGCATAGTTTTGATCTCGTCGCGTC
GGGCCCAACCTGGGGCAACGTCGTCGTGGAGACCTTTAAGGGACAGCCGA
TCGATGTCGAGCTACCGGCGTCGGTCTCTAGTCAGCATCTAGTTAATTTC
AAGGTCTTGGTTGGCTTGCCAAGGAACGAAGACAAGGTGGAACGAACGGC
AAACGTCCACTTCGAGCTCACGCTTCCAGTTCACCTCAGATACCCTGATC
CGTCCTGCAAGCGTCGAGGGGAAGATTGCGAACACTACGCATGGGTGGAG
GTACCACCGCCGGTTGTGGGTGTTCGGTGTGGAGGTGCGCTTGGGACAGA
GAATTTCGCCTCCGTGCTCCCGATTACGCCGCCCACACCGGTAGTGCTGC
GCGTTCCCCGCGGAATCTTGTGGCACAGAGACTTGGTTGTGTGGGTTACC
ATAGGAGTGGCTATGCTTGGAATGTTGTTCACGATGCGCACACTTTGCAC
GTTGCCAGTATTAATAGATGCCGGCCGTAAGAGACGCTCAAAAATCCATA
TTGATTAGGTACCACCGCCGGTTGTGGGTGTTCGGTGTGGAGGTGCGCTT
GGGACAGAGAATTTCGCCTCCGTGCTCCCGATTACGCCGCCCACACCGGT
AGTGCTGCGCGTTCCCCGCGGAATCTTGTGGCACAGAGACTTGGTTGTGT
GGGTTACCATAGGAGTGGCTATGCTTGGAATGTTGTTCACGATGCGCACA
CTTTGCACGTTGCCAGTATTAATAGATGCCGGCCGTAAGAGACGCTCAAA
AATCCATATTGATTAG
back to top