mRNA_F-serratus_M_contig90.20406.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20406.1
Unique NamemRNA_F-serratus_M_contig90.20406.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:628361..630302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size482
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20406.1prot_F-serratus_M_contig90.20406.1Fucus serratus malepolypeptideF-serratus_M_contig90 628447..630302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.4628835-UTR-F-serratus_M_contig90:628360..6284461622932621.4628835-UTR-F-serratus_M_contig90:628360..628446Fucus serratus maleUTRF-serratus_M_contig90 628361..628446 +
1690964390.1031966-UTR-F-serratus_M_contig90:628360..6284461690964390.1031966-UTR-F-serratus_M_contig90:628360..628446Fucus serratus maleUTRF-serratus_M_contig90 628361..628446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.4830768-CDS-F-serratus_M_contig90:628446..6288041622932621.4830768-CDS-F-serratus_M_contig90:628446..628804Fucus serratus maleCDSF-serratus_M_contig90 628447..628804 +
1690964390.1120706-CDS-F-serratus_M_contig90:628446..6288041690964390.1120706-CDS-F-serratus_M_contig90:628446..628804Fucus serratus maleCDSF-serratus_M_contig90 628447..628804 +
1622932621.5067449-CDS-F-serratus_M_contig90:630264..6303021622932621.5067449-CDS-F-serratus_M_contig90:630264..630302Fucus serratus maleCDSF-serratus_M_contig90 630265..630302 +
1690964390.1236427-CDS-F-serratus_M_contig90:630264..6303021690964390.1236427-CDS-F-serratus_M_contig90:630264..630302Fucus serratus maleCDSF-serratus_M_contig90 630265..630302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20406.1

>prot_F-serratus_M_contig90.20406.1 ID=prot_F-serratus_M_contig90.20406.1|Name=mRNA_F-serratus_M_contig90.20406.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MSTIKSLGIVESNGASEEFYGDSDADENPFEHSSAHGVEAFAPASLDAQP
ISGDVLAGAEPGERFSLSTTTASGKSSSSMSVGQLPQDHRRRFPQASGPL
TFPAIVGQNNPFITSDLRSRAGAGVVAAVSPV
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mRNA from alignment at F-serratus_M_contig90:628361..630302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20406.1 ID=mRNA_F-serratus_M_contig90.20406.1|Name=mRNA_F-serratus_M_contig90.20406.1|organism=Fucus serratus male|type=mRNA|length=1942bp|location=Sequence derived from alignment at F-serratus_M_contig90:628361..630302+ (Fucus serratus male)
TGTAAATGTGTCTTTGGACAGAGCAAATACTAGCTCTAGTAAGGGCGGCG
AGTCCCTCGCATCGAAGTTAACGACAGCCCGAAGAAATGAGCACCATCAA
AAGTCTAGGGATCGTTGAAAGTAACGGAGCCTCAGAGGAATTCTACGGCG
ACAGCGACGCAGATGAGAACCCGTTCGAGCACTCCTCGGCCCACGGAGTT
GAAGCTTTCGCGCCAGCCTCTCTCGATGCACAACCCATCAGCGGCGATGT
TCTCGCCGGAGCCGAACCGGGAGAGCGGTTCAGCCTCTCCACCACTACTG
CTAGTGGAAAGTCATCATCTTCTATGTCGGTGGGACAATTGCCGCAAGAT
CACCGGCGCCGGTTTCCGCAGGCGTCTGGGCCCCTGACTTTTCCTGCGAT
CGTCGGTCAGAACAACCCGTTCATAACCAGCGACCTCCGTTCAAGTAAGA
GAACATTTTCCTTAAACACTCGCAATGTTAGAAATCATCATCGACATCCA
TCTCTTAAGATCTACTGTGTGCTTTGACGCCCGTGGGCGCACCCCCGACC
AGTATGACGGTGGATTTCTACCCGATATTATCTGCTGACCCTATGCTACT
ATCATTGTCCCATCCATTTAAATTTAATTTAGAGTTTTTGCCCTTGCAGC
GAATGTTCCCACCTATGAACGTTTTGACACGTTTTCCTCCGTACTGAGTC
CATGCTCGGAAGGTTTAGGTGTGTACAGATTTTCCATCCATAAATGCACA
TGTTCAGCCGGAAGAAGAGACTAATATAACTACAGCTGTACCAGTACCTA
TTCCCCGCCCTATACTAAAATGGTATTCGACAACGTACAAGTTCTAATCA
TAAGTACAGTACAATACAGCACTGTTTGACACTTTTCCCCCCTAAACGGG
GATGCTCAAAAAGTCTAAGTGCTGTTCTGATTTTTCTTTAAAAAATACAG
CACTGTTTGTAGTTACAGTAGTTCCTCCTTGTTTGATTGTTTATTTATTG
ATTCCTCACATTTATTATTAGCGTATTAGTCGATACTTGCAAGTGAAGAA
ACTACGGTACCACAGTGAGTCAGCTATACACCCGGTACTTTTAACGTGCC
CCCTTCATACCATTAGTGGGTGCGGGAAAGAGAGGCGCATATTAATTGGT
TCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTTA
CTGGCCCTGTGTCGGCGGACTCTCGGCACTGAACGCCGTCGGTACGCAAT
TGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCA
TAAATGGACGCCGCCGCGGAACTCGGGAGGGATCCCGTAAGTAAGCACCA
GCTTGAGTATGGAGATGAGCAGGCTGGTGCGGGACGGGACGGCTGAAGCC
GTCTCGCGAAATCAAATTCCCATGCATGTACGGAGACAGGGGAATATTTA
TTTTCCCTGTTCAGCTGACGACGAGCAGTATTGGCAACCTTACCCGGTTG
ATCCATACTTTGCTGTATGTGATGACCATACATACCTATCAAATGTCAAT
CACGCTCGTGGTCACAAAGAGATACGAAGGTCAACGGGTCGCATCTGGTG
ACAACCTACTACTCGGACCAACAGGGATCCAAATCGCGACAAAATCCTTG
CCAGGTTCAATCAACAACCGATAACATCGTAAACTTATTTACGCATCGCT
GTCGCGTCGGGGGGCGAGATTTAGCAGCGAGGAGCAACTCGTACGACTTT
TTCTTTGACAAGTGGTTTAAAAAACGTAGCTCCCTCCTGAGCTTGACTTG
CGCGCATAACCCGCCACACGTTGTGGTGTTCATCATGGAGCGGCGCTCTG
TGATCCCCCCCCCCACGCATTACGCATTTGCTCTCGACGCGTCGGCCATA
CCAGGGGCAGGGGCAGGGGTGGTCGCAGCGGTGTCACCCGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig90:628361..630302+

>mRNA_F-serratus_M_contig90.20406.1 ID=mRNA_F-serratus_M_contig90.20406.1|Name=mRNA_F-serratus_M_contig90.20406.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig90:628361..630302+ (Fucus serratus male)
ATGAGCACCATCAAAAGTCTAGGGATCGTTGAAAGTAACGGAGCCTCAGA
GGAATTCTACGGCGACAGCGACGCAGATGAGAACCCGTTCGAGCACTCCT
CGGCCCACGGAGTTGAAGCTTTCGCGCCAGCCTCTCTCGATGCACAACCC
ATCAGCGGCGATGTTCTCGCCGGAGCCGAACCGGGAGAGCGGTTCAGCCT
CTCCACCACTACTGCTAGTGGAAAGTCATCATCTTCTATGTCGGTGGGAC
AATTGCCGCAAGATCACCGGCGCCGGTTTCCGCAGGCGTCTGGGCCCCTG
ACTTTTCCTGCGATCGTCGGTCAGAACAACCCGTTCATAACCAGCGACCT
CCGTTCAAATGAGCACCATCAAAAGTCTAGGGATCGTTGAAAGTAACGGA
GCCTCAGAGGAATTCTACGGCGACAGCGACGCAGATGAGAACCCGTTCGA
GCACTCCTCGGCCCACGGAGTTGAAGCTTTCGCGCCAGCCTCTCTCGATG
CACAACCCATCAGCGGCGATGTTCTCGCCGGAGCCGAACCGGGAGAGCGG
TTCAGCCTCTCCACCACTACTGCTAGTGGAAAGTCATCATCTTCTATGTC
GGTGGGACAATTGCCGCAAGATCACCGGCGCCGGTTTCCGCAGGCGTCTG
GGCCCCTGACTTTTCCTGCGATCGTCGGTCAGAACAACCCGTTCATAACC
AGCGACCTCCGTTCAAGGGCAGGGGCAGGGGTGGTCGCAGCGGTGTCACC
CGTGGGGCAGGGGCAGGGGTGGTCGCAGCGGTGTCACCCGTG
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