mRNA_F-serratus_M_contig90.20384.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20384.1
Unique NamemRNA_F-serratus_M_contig90.20384.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:107156..108288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1093
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20384.1prot_F-serratus_M_contig90.20384.1Fucus serratus malepolypeptideF-serratus_M_contig90 107200..108031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.3600962-UTR-F-serratus_M_contig90:107155..1071991622932621.3600962-UTR-F-serratus_M_contig90:107155..107199Fucus serratus maleUTRF-serratus_M_contig90 107156..107199 -
1690964390.0666242-UTR-F-serratus_M_contig90:107155..1071991690964390.0666242-UTR-F-serratus_M_contig90:107155..107199Fucus serratus maleUTRF-serratus_M_contig90 107156..107199 -
1622932621.4098186-UTR-F-serratus_M_contig90:108031..1082881622932621.4098186-UTR-F-serratus_M_contig90:108031..108288Fucus serratus maleUTRF-serratus_M_contig90 108032..108288 -
1690964390.094849-UTR-F-serratus_M_contig90:108031..1082881690964390.094849-UTR-F-serratus_M_contig90:108031..108288Fucus serratus maleUTRF-serratus_M_contig90 108032..108288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.3767095-CDS-F-serratus_M_contig90:107199..1074631622932621.3767095-CDS-F-serratus_M_contig90:107199..107463Fucus serratus maleCDSF-serratus_M_contig90 107200..107463 -
1690964390.0782368-CDS-F-serratus_M_contig90:107199..1074631690964390.0782368-CDS-F-serratus_M_contig90:107199..107463Fucus serratus maleCDSF-serratus_M_contig90 107200..107463 -
1622932621.3945777-CDS-F-serratus_M_contig90:107503..1080311622932621.3945777-CDS-F-serratus_M_contig90:107503..108031Fucus serratus maleCDSF-serratus_M_contig90 107504..108031 -
1690964390.0865834-CDS-F-serratus_M_contig90:107503..1080311690964390.0865834-CDS-F-serratus_M_contig90:107503..108031Fucus serratus maleCDSF-serratus_M_contig90 107504..108031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20384.1

>prot_F-serratus_M_contig90.20384.1 ID=prot_F-serratus_M_contig90.20384.1|Name=mRNA_F-serratus_M_contig90.20384.1|organism=Fucus serratus male|type=polypeptide|length=264bp
MLIQKSSPPHHRSSGSTNSPPPGVLQLEPASAPTGDPNSYIAQPGTAYTS
AGHGHRWTPQLLRLAYWSLVNYYTTSTTTRLADAPCLRTIPHVAPSGYTY
QHRPPHASPTPRTCRPPHFPRTFRRLYHIPVRGTPQTQQPSTHDAPNAPS
LTVSTATSAARKFPDNDSQDLHRQPQETADELSAFANKPAPRPGILNRVT
IREKLASSSTDGSSRRHGRLKLSAPIQLTRPLDGNSPPQRNHFINYRIHP
GLSHTGSGPGHTH*
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mRNA from alignment at F-serratus_M_contig90:107156..108288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20384.1 ID=mRNA_F-serratus_M_contig90.20384.1|Name=mRNA_F-serratus_M_contig90.20384.1|organism=Fucus serratus male|type=mRNA|length=1133bp|location=Sequence derived from alignment at F-serratus_M_contig90:107156..108288- (Fucus serratus male)
GGCTTAACAAGTCAATTGACAACTCCTCCTAGGCGGATGTACCGTTACCT
CACATACCCCCGTCACAACGAATACGTAAGAGTCACACATACGGAACGAT
TCTGGAGATACACCGGTTTACGGTAGATGTCGCAGTTAGAAGCTGAGCAC
GACTACTGCCAGACGTGTCCCTTCTAGAACAGGTCGGCAACGGCGGGAGC
GGCGAACGTCAAGACCCTTGGAGCGCTCTCCAAGGACACCCAAGAGCGGA
AGGAGATATGCTAATTCAGAAGTCGTCTCCACCACACCACCGTTCGTCAG
GTTCAACCAACAGCCCACCTCCCGGAGTTCTTCAGCTGGAACCGGCCTCG
GCGCCTACGGGAGATCCTAACTCCTACATCGCCCAGCCTGGGACCGCCTA
TACCTCCGCTGGACACGGACACCGATGGACACCCCAACTACTGCGCCTCG
CCTACTGGAGCCTCGTCAACTACTACACCACGTCAACTACTACACGCCTC
GCCGACGCGCCGTGCCTGCGGACAATCCCCCACGTCGCACCATCGGGGTA
CACCTACCAACATCGACCGCCGCACGCTTCGCCAACGCCCCGAACTTGTA
GACCGCCCCATTTCCCCCGTACCTTCCGGCGACTCTACCATATACCCGTA
CGAGGCACGCCACAGACGCAGCAGCCTTCGACACACGACGCACCCAACGC
TCCTTCGTTGACCGTCAGTACAGCCACCAGCGCCGCCCGGAAGTTCCCAG
ACAACGACTCCCAAGACTTGCATCGGCAACCCCAAGCGACATCTCACATC
AGGATGACTAGGACTGCAACACCAGGAAACTGCCGACGAACTCTCCGCAT
TTGCCAACAAACCCGCCCCGCGACCCGGTATATTAAACCGCGTTACGATC
CGGGAAAAACTGGCATCTTCCTCCACCGACGGCTCTTCCCGTCGTCACGG
CCGCCTCAAGCTCTCCGCACCCATACAGCTTACCCGGCCACTGGACGGAA
ACTCGCCGCCTCAAAGGAACCACTTCATCAACTACCGTATCCACCCCGGC
CTCAGCCATACCGGTTCCGGCCCCGGCCATACCCACTGAGGCCCGCAGGG
CCCAGTGCTTGATGGTGTACCTCTGGGTCAAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig90:107156..108288-

>mRNA_F-serratus_M_contig90.20384.1 ID=mRNA_F-serratus_M_contig90.20384.1|Name=mRNA_F-serratus_M_contig90.20384.1|organism=Fucus serratus male|type=CDS|length=1584bp|location=Sequence derived from alignment at F-serratus_M_contig90:107156..108288- (Fucus serratus male)
ATGCTAATTCAGAAGTCGTCTCCACCACACCACCGTTCGTCAGGTTCAAC
CAACAGCCCACCTCCCGGAGTTCTTCAGCTGGAACCGGCCTCGGCGCCTA
CGGGAGATCCTAACTCCTACATCGCCCAGCCTGGGACCGCCTATACCTCC
GCTGGACACGGACACCGATGGACACCCCAACTACTGCGCCTCGCCTACTG
GAGCCTCGTCAACTACTACACCACGTCAACTACTACACGCCTCGCCGACG
CGCCGTGCCTGCGGACAATCCCCCACGTCGCACCATCGGGGTACACCTAC
CAACATCGACCGCCGCACGCTTCGCCAACGCCCCGAACTTGTAGACCGCC
CCATTTCCCCCGTACCTTCCGGCGACTCTACCATATACCCGTACGAGGCA
CGCCACAGACGCAGCAGCCTTCGACACACGACGCACCCAACGCTCCTTCG
TTGACCGTCAGTACAGCCACCAGCGCCGCCCGGAAGTTCCCAGACAACGA
CTCCCAAGACTTGCATCGGCAACCCCAAATGCTAATTCAGAAGTCGTCTC
CACCACACCACCGTTCGTCAGGTTCAACCAACAGCCCACCTCCCGGAGTT
CTTCAGCTGGAACCGGCCTCGGCGCCTACGGGAGATCCTAACTCCTACAT
CGCCCAGCCTGGGACCGCCTATACCTCCGCTGGACACGGACACCGATGGA
CACCCCAACTACTGCGCCTCGCCTACTGGAGCCTCGTCAACTACTACACC
ACGTCAACTACTACACGCCTCGCCGACGCGCCGTGCCTGCGGACAATCCC
CCACGTCGCACCATCGGGGTACACCTACCAACATCGACCGCCGCACGCTT
CGCCAACGCCCCGAACTTGTAGACCGCCCCATTTCCCCCGTACCTTCCGG
CGACTCTACCATATACCCGTACGAGGCACGCCACAGACGCAGCAGCCTTC
GACACACGACGCACCCAACGCTCCTTCGTTGACCGTCAGTACAGCCACCA
GCGCCGCCCGGAAGTTCCCAGACAACGACTCCCAAGACTTGCATCGGCAA
CCCCAAGAAACTGCCGACGAACTCTCCGCATTTGCCAACAAACCCGCCCC
GCGACCCGGTATATTAAACCGCGTTACGATCCGGGAAAAACTGGCATCTT
CCTCCACCGACGGCTCTTCCCGTCGTCACGGCCGCCTCAAGCTCTCCGCA
CCCATACAGCTTACCCGGCCACTGGACGGAAACTCGCCGCCTCAAAGGAA
CCACTTCATCAACTACCGTATCCACCCCGGCCTCAGCCATACCGGTTCCG
GCCCCGGCCATACCCACTGAGAAACTGCCGACGAACTCTCCGCATTTGCC
AACAAACCCGCCCCGCGACCCGGTATATTAAACCGCGTTACGATCCGGGA
AAAACTGGCATCTTCCTCCACCGACGGCTCTTCCCGTCGTCACGGCCGCC
TCAAGCTCTCCGCACCCATACAGCTTACCCGGCCACTGGACGGAAACTCG
CCGCCTCAAAGGAACCACTTCATCAACTACCGTATCCACCCCGGCCTCAG
CCATACCGGTTCCGGCCCCGGCCATACCCACTGA
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