mRNA_F-serratus_M_contig896.20333.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig896.20333.1
Unique NamemRNA_F-serratus_M_contig896.20333.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: D7G2R9_ECTSI (Cilia- and flagella-associated protein 299 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R9_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 5.670e-150
Identity = 217/238 (91.18%), Postives = 225/238 (94.54%), Query Frame = 2
Query:   83 SGKKKMASPEDLHEMDIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            SGK+  AS EDLH MD VE YETYEDYLDSQVT+TDM+YLQDED+ARQLVELGYRGSGDTLQREEFEARKKAL ERS QKTN PKQLSS+GKDLSASPFLLALGNREELVRNGKLT +IFVRDVNSKG EVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTS STPNFQVIADG+AGLLFKNKRDRKV+NVDP APPGDNTTRTEIRTPEYRQVVIYDHMTRRKS
Sbjct:    2 SGKRDKASAEDLHVMDTVEQYETYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSASPFLLALGNREELVRNGKLTSIIFVRDVNSKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 239          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A7S1CI53_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI53_9STRA)

HSP 1 Score: 351 bits (900), Expect = 4.520e-117
Identity = 172/227 (75.77%), Postives = 198/227 (87.22%), Query Frame = 2
Query:  116 LHEMDIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            L   D+  +Y TYEDYLDSQV  TDM YL+DE++ARQLVELGYRGSG+TL+R+EFE+RKKA  E+  +K N PK L S GKDLSA PFL AL NREELVRNGKLT +IF+RDVN+KG EVSGYIDYAHRL++ NFEPYF+R++KL+P+P+DLSYYNWETQTSTSNS+PNFQVIAD +AGLLFKNKRDRKVINVDP + PGDN+TRTEIRT EY QVVIYDHMTRRKS
Sbjct:   12 LESKDVALEYATYEDYLDSQVGTTDMFYLEDEELARQLVELGYRGSGETLKRDEFESRKKAEREKHLRKDNAPKPLFSMGKDLSAFPFLQALANREELVRNGKLTSIIFIRDVNAKGQEVSGYIDYAHRLKTENFEPYFDRKRKLLPKPSDLSYYNWETQTSTSNSSPNFQVIADNEAGLLFKNKRDRKVINVDPKSNPGDNSTRTEIRTKEYLQVVIYDHMTRRKS 238          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A835ZKU0_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKU0_9STRA)

HSP 1 Score: 346 bits (888), Expect = 3.410e-115
Identity = 171/240 (71.25%), Postives = 199/240 (82.92%), Query Frame = 2
Query:   74 SMSSGKKKMASPEDLHEMDIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRK 793
            SM  G K    P     +D V        YLDSQVT TDM+YL+DED+ARQLVELGYRGSGDTLQR+EF ARKK+L +R+ QK+N PKQL+SAGK++ +SPFL AL NREELVRNGKLT +IF+RD NSKG EVSGYID+A RL++ NFEPYF+++KKLMP+P+DLSYYNWETQT+TS STPNFQVIAD +AGLLFKNKRDRKVINVDP  PPGDNTTR E+++ EY QVVIYDHMTRRK
Sbjct:    2 SMPKGDKDAEGPHLQDTLDTVXXXXXXXXYLDSQVTATDMYYLEDEDLARQLVELGYRGSGDTLQRDEFYARKKSLRDRATQKSNAPKQLASAGKNVDSSPFLHALANREELVRNGKLTSIIFIRDKNSKGQEVSGYIDFAQRLKTENFEPYFDKKKKLMPKPSDLSYYNWETQTTTSTSTPNFQVIADSEAGLLFKNKRDRKVINVDPKVPPGDNTTRIEVKSLEYMQVVIYDHMTRRK 241          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: F0Y4F2_AURAN (Cilia- and flagella-associated protein 299 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F2_AURAN)

HSP 1 Score: 345 bits (886), Expect = 5.180e-115
Identity = 168/223 (75.34%), Postives = 198/223 (88.79%), Query Frame = 2
Query:  128 DIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            D +E + +YEDYLD+QV++TDM+YL+DE++ARQLVELGYRGSGDTL+R+EFEARK+AL ER  QK NVPKQL+SA KDLSA PFLLAL NRE LVRNGKLT +IF+RD N+KG EVSGYIDYAHRL++ NFEPYF+ +K+LMP+PTDLSYYNWETQTST NSTPNFQVIAD   GLLFKNKRDRKVINVDP   PGDN++R E++TPEY QVVI+DH+TRRK+
Sbjct:   13 DSLEQFASYEDYLDAQVSETDMYYLEDEELARQLVELGYRGSGDTLKRDEFEARKRALRERGTQKANVPKQLASANKDLSAQPFLLALANREALVRNGKLTSIIFLRDKNAKGQEVSGYIDYAHRLKTENFEPYFKGQKRLMPKPTDLSYYNWETQTSTHNSTPNFQVIADSD-GLLFKNKRDRKVINVDPKQNPGDNSSRNELKTPEYLQVVIFDHLTRRKN 234          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A1V9Z039_9STRA (Cilia- and flagella-associated protein 299 n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z039_9STRA)

HSP 1 Score: 340 bits (872), Expect = 7.570e-113
Identity = 163/223 (73.09%), Postives = 196/223 (87.89%), Query Frame = 2
Query:  128 DIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            D ++ Y TYEDYLDSQ+++TD+ YL+DE++ARQL+ELGYRG+G+TL+RE+F+ARKK+  ER+ QKTN+PKQL+SAGKD S  PFL AL  REE+VRNGKLT +IF+RD N KG EVSGYIDYA RL+S  FEPYFER+K+L+P+P+DLSYYNWETQT TSNS+PNFQVIAD + GLLFKNKRDRKVINVDP A PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:   15 DSLDQYATYEDYLDSQISETDLFYLEDEELARQLIELGYRGTGETLRREDFDARKKSERERNAQKTNLPKQLASAGKDFSQMPFLSALATREEMVRNGKLTSIIFIRDRNPKGQEVSGYIDYALRLKSEPFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTTEYMQVVIYDHMTRRKN 237          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A2R5GCS3_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCS3_9STRA)

HSP 1 Score: 340 bits (872), Expect = 9.330e-113
Identity = 168/223 (75.34%), Postives = 194/223 (87.00%), Query Frame = 2
Query:  134 VEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGH--EVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            +E + TYEDYLDSQ++ TD +YL+DE +ARQLVELGYRGSG+TL+REEFEARKKA  +R +QK + PK L+SA KDL+  PFL AL NREELVRNGKLT +IF+RD  +KG   EVSGYID+AHRL++ NFEPYF+R+KKLMP+PTDLSYYNWET TSTSNSTPNFQVIAD +AGLLFKNKRDRKVINVDP A PGDN+TRTEI+T EY QVVIYDHMTRRKS
Sbjct:   21 LEQFMTYEDYLDSQISSTDKYYLEDESLARQLVELGYRGSGETLKREEFEARKKAERDRHSQKKSAPKMLASASKDLNGFPFLQALANREELVRNGKLTSIIFIRDKTNKGQGQEVSGYIDFAHRLKTENFEPYFDRKKKLMPKPTDLSYYNWETHTSTSNSTPNFQVIADNEAGLLFKNKRDRKVINVDPKANPGDNSTRTEIQTDEYLQVVIYDHMTRRKS 243          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: H3G868_PHYRM (Cilia- and flagella-associated protein 299 n=24 Tax=Oomycota TaxID=4762 RepID=H3G868_PHYRM)

HSP 1 Score: 339 bits (869), Expect = 2.150e-112
Identity = 162/221 (73.30%), Postives = 197/221 (89.14%), Query Frame = 2
Query:  134 VEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            ++ + TYEDYLDSQ+++TD+ YL+DE++ARQLVELGYRGSG+TL+R++FEARK+A  ER+ QKT+ PK L+SAGKDLS  PFL AL +RE+LVRNGKLTC+IF+RD N+KG E+SGYIDYA RL++  FEPYFER+KKL+P+ +DLSYYNWETQTSTSNSTPNFQVIAD + GLLFKNKRDRKV+NVDP A PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:   17 LDQFATYEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQYPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFEPYFERKKKLLPKSSDLSYYNWETQTSTSNSTPNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 237          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A0M0JDU9_9EUKA (Cilia- and flagella-associated protein 299 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDU9_9EUKA)

HSP 1 Score: 328 bits (842), Expect = 2.440e-108
Identity = 165/235 (70.21%), Postives = 198/235 (84.26%), Query Frame = 2
Query:   98 MASPEDLHEMD-IVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLE-RSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            M++ +DL   D IV DY+TYEDYLDSQ+T TD++YL+DED+ARQLVELGYRGSG+TL+R+EF ARKKA  + R N+    PK L+SA KD++  PFL +L  REE+VRNGKLT +IF+RD N+KG EVSGYIDYAHRL++ NFEPYFER+KKLMP  TDLS+YNWETQTSTSN+TPNFQVIAD +AGLLFKNKRDRKVINVDP A PGDN+ R E+ T EY QVV+YDH+TRRK+
Sbjct:    1 MSTEDDLAISDSIVNDYDTYEDYLDSQITPTDIYYLEDEDLARQLVELGYRGSGETLKRDEFLARKKAAEQARLNKLRATPKPLASAFKDVTGFPFLASLAEREEMVRNGKLTTIIFIRDKNAKGQEVSGYIDYAHRLKTENFEPYFERKKKLMPTMTDLSFYNWETQTSTSNATPNFQVIADNEAGLLFKNKRDRKVINVDPKARPGDNSRRIELHTHEYTQVVLYDHVTRRKT 235          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A7S0Q930_9EUKA (Cilia- and flagella-associated protein 299 n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0Q930_9EUKA)

HSP 1 Score: 327 bits (839), Expect = 7.710e-108
Identity = 157/223 (70.40%), Postives = 195/223 (87.44%), Query Frame = 2
Query:  131 IVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKALLE-RSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            IV ++ TYEDYLDSQ+ +TD++YL+DE++ARQLVELGYRGSG+TL+REEFE RKKA+ + R N+    PK L+SAGKD+S  PFL +L  REE+VRNGKLT +IF+R+ N+KG EVSGYIDYAHRL++ +FEPYFER+KKLMP+P+DLS+YNWETQTSTSN+TPNFQVIAD +AGLLFKNKRDRKVINVDP + PGDN+ R E++T EY QVV+YDH+TRRK+
Sbjct:   16 IVSEFATYEDYLDSQINETDLYYLEDEELARQLVELGYRGSGETLKREEFEGRKKAVEQARINKLRAAPKALASAGKDVSGFPFLASLAEREEMVRNGKLTTIIFIRERNAKGQEVSGYIDYAHRLKTEHFEPYFERKKKLMPKPSDLSFYNWETQTSTSNATPNFQVIADNEAGLLFKNKRDRKVINVDPKSRPGDNSRRIELQTHEYTQVVLYDHVTRRKT 238          
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Match: A0A7S4M354_9EUKA (Cilia- and flagella-associated protein 299 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M354_9EUKA)

HSP 1 Score: 327 bits (837), Expect = 3.090e-107
Identity = 158/223 (70.85%), Postives = 192/223 (86.10%), Query Frame = 2
Query:  131 IVEDYETYEDYLDSQVTKTDMHYLQDEDIARQLVELGYRGSGDTLQREEFEARKKAL-LERSNQKTNVPKQLSSAGKDLSASPFLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRDRKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 796
            IV +++TYEDYLDSQ++ TD++YL+DED+ARQLVELGYRGSG+TL+R+EFEARKKA  + R N+    PK L+SA KD++   FL +L  REE+VRNGKLT +IF+RD N KG EVSGYIDYAHRL++ NFEPYFER+KKLMP+P+DLS+YNWETQTSTSN+TPNFQVIAD +AGLLFKNKRDRKVINVDP A PGDN+ R E+ T EY QVV+YDH+TRRK+
Sbjct:   36 IVGEFQTYEDYLDSQISATDLYYLEDEDLARQLVELGYRGSGETLKRDEFEARKKAAEVARMNKLRAAPKALASANKDVTGYAFLASLAEREEMVRNGKLTTIIFIRDKNHKGQEVSGYIDYAHRLKTENFEPYFERKKKLMPKPSDLSFYNWETQTSTSNATPNFQVIADNEAGLLFKNKRDRKVINVDPKARPGDNSRRIELHTHEYTQVVLYDHVTRRKT 258          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig896.20333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R9_ECTSI5.670e-15091.18Cilia- and flagella-associated protein 299 n=2 Tax... [more]
A0A7S1CI53_9STRA4.520e-11775.77Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A835ZKU0_9STRA3.410e-11571.25Cilia- and flagella-associated protein 299 n=1 Tax... [more]
F0Y4F2_AURAN5.180e-11575.34Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A1V9Z039_9STRA7.570e-11373.09Cilia- and flagella-associated protein 299 n=10 Ta... [more]
A0A2R5GCS3_9STRA9.330e-11375.34Cilia- and flagella-associated protein 299 n=1 Tax... [more]
H3G868_PHYRM2.150e-11273.30Cilia- and flagella-associated protein 299 n=24 Ta... [more]
A0A0M0JDU9_9EUKA2.440e-10870.21Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A7S0Q930_9EUKA7.710e-10870.40Cilia- and flagella-associated protein 299 n=2 Tax... [more]
A0A7S4M354_9EUKA3.090e-10770.85Cilia- and flagella-associated protein 299 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig896contigF-serratus_M_contig896:335140..339595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.0
Seed ortholog evalue5.8e-92
Seed eggNOG ortholog44056.XP_009035204.1
Preferred nameC4orf22
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4464)
EggNOG OGs28K8J@1,2QSP8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1335
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig896.20333.1prot_F-serratus_M_contig896.20333.1Fucus serratus malepolypeptideF-serratus_M_contig896 335216..339059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932609.3398693-UTR-F-serratus_M_contig896:335139..3352151622932609.3398693-UTR-F-serratus_M_contig896:335139..335215Fucus serratus maleUTRF-serratus_M_contig896 335140..335215 +
1690964384.8549056-UTR-F-serratus_M_contig896:335139..3352151690964384.8549056-UTR-F-serratus_M_contig896:335139..335215Fucus serratus maleUTRF-serratus_M_contig896 335140..335215 +
1622932609.5314598-UTR-F-serratus_M_contig896:339059..3395951622932609.5314598-UTR-F-serratus_M_contig896:339059..339595Fucus serratus maleUTRF-serratus_M_contig896 339060..339595 +
1690964384.9431982-UTR-F-serratus_M_contig896:339059..3395951690964384.9431982-UTR-F-serratus_M_contig896:339059..339595Fucus serratus maleUTRF-serratus_M_contig896 339060..339595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932609.3563352-CDS-F-serratus_M_contig896:335215..3353141622932609.3563352-CDS-F-serratus_M_contig896:335215..335314Fucus serratus maleCDSF-serratus_M_contig896 335216..335314 +
1690964384.8696837-CDS-F-serratus_M_contig896:335215..3353141690964384.8696837-CDS-F-serratus_M_contig896:335215..335314Fucus serratus maleCDSF-serratus_M_contig896 335216..335314 +
1622932609.372362-CDS-F-serratus_M_contig896:336773..3368681622932609.372362-CDS-F-serratus_M_contig896:336773..336868Fucus serratus maleCDSF-serratus_M_contig896 336774..336868 +
1690964384.8793142-CDS-F-serratus_M_contig896:336773..3368681690964384.8793142-CDS-F-serratus_M_contig896:336773..336868Fucus serratus maleCDSF-serratus_M_contig896 336774..336868 +
1622932609.3915997-CDS-F-serratus_M_contig896:337450..3375381622932609.3915997-CDS-F-serratus_M_contig896:337450..337538Fucus serratus maleCDSF-serratus_M_contig896 337451..337538 +
1690964384.8895595-CDS-F-serratus_M_contig896:337450..3375381690964384.8895595-CDS-F-serratus_M_contig896:337450..337538Fucus serratus maleCDSF-serratus_M_contig896 337451..337538 +
1622932609.4247453-CDS-F-serratus_M_contig896:337980..3381691622932609.4247453-CDS-F-serratus_M_contig896:337980..338169Fucus serratus maleCDSF-serratus_M_contig896 337981..338169 +
1690964384.8999631-CDS-F-serratus_M_contig896:337980..3381691690964384.8999631-CDS-F-serratus_M_contig896:337980..338169Fucus serratus maleCDSF-serratus_M_contig896 337981..338169 +
1622932609.438969-CDS-F-serratus_M_contig896:338402..3384831622932609.438969-CDS-F-serratus_M_contig896:338402..338483Fucus serratus maleCDSF-serratus_M_contig896 338403..338483 +
1690964384.9197302-CDS-F-serratus_M_contig896:338402..3384831690964384.9197302-CDS-F-serratus_M_contig896:338402..338483Fucus serratus maleCDSF-serratus_M_contig896 338403..338483 +
1622932609.4883907-CDS-F-serratus_M_contig896:338888..3390591622932609.4883907-CDS-F-serratus_M_contig896:338888..339059Fucus serratus maleCDSF-serratus_M_contig896 338889..339059 +
1690964384.9306662-CDS-F-serratus_M_contig896:338888..3390591690964384.9306662-CDS-F-serratus_M_contig896:338888..339059Fucus serratus maleCDSF-serratus_M_contig896 338889..339059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig896.20333.1

>prot_F-serratus_M_contig896.20333.1 ID=prot_F-serratus_M_contig896.20333.1|Name=mRNA_F-serratus_M_contig896.20333.1|organism=Fucus serratus male|type=polypeptide|length=241bp
MSSGKKKMASPEDLHEMDIVEDYETYEDYLDSQVTKTDMHYLQDEDIARQ
LVELGYRGSGDTLQREEFEARKKALLERSNQKTNVPKQLSSAGKDLSASP
FLLALGNREELVRNGKLTCVIFVRDVNSKGHEVSGYIDYAHRLRSTNFEP
YFERRKKLMPRPTDLSYYNWETQTSTSNSTPNFQVIADGKAGLLFKNKRD
RKVINVDPHAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS*
back to top

mRNA from alignment at F-serratus_M_contig896:335140..339595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig896.20333.1 ID=mRNA_F-serratus_M_contig896.20333.1|Name=mRNA_F-serratus_M_contig896.20333.1|organism=Fucus serratus male|type=mRNA|length=4456bp|location=Sequence derived from alignment at F-serratus_M_contig896:335140..339595+ (Fucus serratus male)
GGTTTACATTTTGATCTATCAAGGGGCGCCCTACGGTAGGACTCAACTGG CGTATGCTATCAATTGATGAGCAAGTATGTCGTCGGGCAAGAAGAAAATG GCTTCGCCGGAGGATCTGCACGAAATGGATATCGTTGAGGACTACGAAAC CTACGAGGATTACCTTGACTCCCAGGTTTAAAAGTGATTCCTGCCACAGT ACACGGATGATAGAATCACGATTCCACAGACCCAAATTCACTCATTAACA CGACCGTGTCGATAGAGCCTCCACGTAGGCTGTCTGATATCCAGCCGATA GTCCCTTGAAACAATCGATAATGGTGTTCTTGACTCAGGACTACATTGGG GCTTTCCAGGGAACCGCTAGTGTATGGTTCATTAAAATCGTCTGTATACA GTAGAACAAACAAAAAAGTATCCAGCCAATATATTCGTCACCCGAGTGGT CTATAGTAGGTAACCTGCATACCTGCTAGTGCGGAAGTCCCGCGTTCGAT TCTTAGATTAAGCAGAATTTGTGTTCTTTCTAGCGTGGGAACGTGAGTAA GTAAAACTCAACCATTGGTTGACGAGTTGTAAGAGGGCCAAACTTGCATC ACGATAAAAATTGTAAGGCGTGAACCGGGGAGAGGTAGGAAGATCCTTTG TGACCACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTGATT TAAAAAATAAAAAACAAAGAAATAAAATCTCCGCTGTTTTCGTTGAAAAG AAAAGATACTACTGCTGTATGCGTGCAAGCGGTCAACTCTATTTCCACAA AATTTATAATGTATTCCATGATTCATGATACCTCTTTTGAAAATAAAATA AAAAATGGCCTTACATATTATACAAGCAGAGTAACGATCGTCAACATGAG TTACATCGACTTTTTCCCCAGCACACGCTTGTTTTGAACCATCCGCGCAT ACAAAGATAATGTTCACCCGAGATAGATATTTGCCGACTTCAATGGTGTC TTTCAGGTGACGCGGCTGCTGTGTACCTCTTGTTATGTCGGAGGGAATGC CCCCCCCTCCCACCCCGTCCCCGGGACGAAAGTTCCTCGACGTCCACCCC ACTATTATTCCCTTGATTGCAAACTGGAGTGACGCTCAAAATATCTGTTG GGAGAGTTTTTGTTAAGATCTTATTTACACCGCGTTACTGATGGAGTTTT CTGTTTGTTTTCATCTCACTTACGGTCGATGGGCCTCAACGGGAAAGGTT ACCAATCCCATCCACTAGAGCGTTGCCGTCCTGCCTGTGGTCACCAAGGA TCTTCCCATCTCTCCCCGGTTCCCGCCTACGAGTTTTTATCGCGATGCAA ATTCAACACTCTTACAACTTGTCAACCACTGGTTGAATTTTACTACCTCG CCTTCTCAAGCCAGAAGGAAATTCCTGTTTTTGTCAAGAATCGAACTCAC GATTCCGCACAGGGAGGCTTTGTTTCCGAAATTTACggtGGTATTAATTT ATTCGTACATCTTACCTAGAGGCCAAATTTCAACCTGGTGCATCAAATCT ATTTTAGGATAAGTGCTGTAACAACAATTTTCTCCTTGGAGAGCTATCAA TAAAGAGGTTGTTGTGCGTTTGGATTTTCTTTAGGTTACGAAGACGGACA TGCACTATCTCCAGGACGAGGATATTGCGCGGCAGTTGGTTGAGCTCGGC TATCGTGGATCGGGGGACACTCTCCAGAGGTGAAGATGTTCTGGGAAAAA ATGTCGTTTTGATCCATTAGTGTTTCTGTTTCAAACAATGCATCCCACTT CAACCAAAACCTTATAAACTCCGATCTGCAGGGAAACTATTATAACAGAT AATGCCCTTTTTCTAGTGCGTGCAATAGTTCCGAAATGTGCGAGAGCATC CTTTTGGGTACCACGCAGCGGATACTAGGCGAAGAAGTCGTCGGTTCGTT GACTGGATTGTTGTGCAGATTTCCTTTAAAACGCTGTTGTACGTTCGCAA AGTACATCTACTAAGAAGGTGGGTCCAGTGCCAGAAACCTCAAAGTGGCG TAACTTCTGTCTCAAGGCAAAAGCACAAGCGACGAATGTCTCCCCCACAC TAGCTTTACGGATAACATCTGCAGTTACCCAGGATGCATCTACATCGAGG AAACTAGAAATGGAAACTGGATACAGTATCTCCGTGGTAGTAGTGTGCAG CATGTCCAGACTGACGCCCTGCCTGGACCGCGGTGTAGGCTGTTTACTCC CGTTCATAGACTACGTCTTGTTCTACCCGTTTGAACCTGCCGCCGCCACG GACACCACCAGGGAGGAGTTCGAGGCTCGGAAGAAGGCCTTGCTAGAGCG CAGTAACCAGAAGACCAATGTACCTAAACAGCTGTCTAGCGCCGGGAAGG TAAACAGCCTGGACTACTGTATATAGTTCAAGAGCTTCATGCGCTCTTCT TGTCGACGAAGAGGATTTACCGCCACCCGTGACAGTGGCCAGAGCTTGCC TCAAGGGATCTTGTCGATACGATGTGGGCTAATAATGTGGCCGTAGACTC ATGCTACGGAACAGGCGATACCATGCGCTTCCGGGTTTCAACACACGTAT AGGACGACTGTTGCGAACCCGGTATAACGGTGGACGGTACCACCGAATCG ACAGCGAATGCTATCATTATAATGTTAGCCTTAATGAAAAGTTGAGGACA GACTAAGCCAAGTCCCCTCGGTTTCGAACAAACGTGGAAAACGTTTGTTC GCTCTTACATAAACAACTTTGTGTATCAGGCCGTCCCCGTGCTTAGAGTC TGTCGTCGCTACCGCACCATTCGCCATGACGTTCGGGTAAGGATCTGAGC GCATCTCCGTTTCTCCTGGCTCTGGGCAACCGAGAAGAGCTCGTGCGCAA TGGTAAGCTGACCTGCGTCATCTTCGTACGGGATGTGAATAGCAAGGGCC ACGAAGTCAGCGGCTACATCGATTACGCACATCGATTGAGGTCCACCAAC TTCGAACCCTACTTCGAGCGCCGCAAAAAGGTGCGTGTATGAGGAAGAGA CGATCCGCCCCTCCGCTGTTGTTTTGCGATACGTAAGGCTAACAGAGTGC GGACGGTACACGGAGATACGCGTCTCATGTTTTGAATCCAGGTCGTGGAA ACGGACTCGTGACGGGTGGGTCGATTCCTAATGAGAGTGCGCCCGTCAAG TTTCCACGCAGCCGCAGGCGGAAAGCTGGGCTTTACCTCGCGCATTGTTT TTTTCTGTCCCAGCTTATGCCGAGGCCGACCGATTTAAGCTACTACAACT GGGAGACGCAAACTTCGACGTCGAATTCCACGCCTAACTTCCAGGTTGGT TTTCAACGGTCTGTCGGACCTAGAGCTACTCAACAGAAATACTTACGACA GGGTTACTCCCTATGATGGGAAACTTTTGTTTGCATTGACGCGCGAAGTA ATGTCTTGGTCAAAACGCACGTTGATAATTTTCCAATCTTTATTACCATC ATACTTCCTGGGCGCGATCGTCGTGCCCCCGTCCGCCGAGAACAGCCAGT CATCCGTAGACATAATCAATTAACGCGAAGACGCTCTTAGCAGCACGCTG TTTAGTCGTTTTGCACAACGACCGCAAGAAAAACTTGATGACAGCTCACG AAACATGGGCGTTTGAACAACGAAAAGGGGATGGAAAAATGACATCTCCT CCGATCCAGACCGCAACAACCGCAAATCCGTGTGTCTCTTTCTCCCAAGG TCATCGCTGATGGGAAGGCGGGACTCTTGTTCAAGAACAAGCGCGACCGC AAAGTGATCAACGTGGACCCTCATGCGCCCCCCGGTGACAACACGACGAG AACAGAGATTCGAACGCCCGAGTACCGACAAGTGGTCATTTACGATCACA TGACGCGGAGGAAAAGTTGATCGGGATCGTTTCATTGAAATTGCCATTTT TAGTACGCCAGAAGAGAAGGACGGTGTTGCTGGGACGCTCCGCATGCTTT GATCAACTAGGCGGCAAATTATGTATGAAGTTTAAATGTGGTGGCACGCA GCGTGATGTCACTACGAAGTAACTGTTGTTGTGTTGTTGATGCTCTCGCG AAGGGTCCACGTTTGATTGGCGAGTGGTCACACCGTCGCATGGCCGTATG TCGGGGACGTGCACATCAAACATGCAGACTACCGACTATTGCTCGATTTT CCAGGCACACAAATCTGAACAGGACGCGCAATTGCACTCAAACAGCGAGG ATGTTCATATTCAAGTATATTGACTACACTATACCAAGGGAAGAATATCC AATAATGGTTCTACATGGGATTTGGTATATGCTACACTCTTCTGCAGGAT CATACCATACTGTAGGTTGTGGTCCCTCGTACTTACATTTCAAACAAGGT ACTTTCGTCTCTTTGATTTGTGCTTCGGTCCCCATGTGTCTCCCCTATAT GCTACG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig896:335140..339595+

>mRNA_F-serratus_M_contig896.20333.1 ID=mRNA_F-serratus_M_contig896.20333.1|Name=mRNA_F-serratus_M_contig896.20333.1|organism=Fucus serratus male|type=CDS|length=1446bp|location=Sequence derived from alignment at F-serratus_M_contig896:335140..339595+ (Fucus serratus male)
ATGTCGTCGGGCAAGAAGAAAATGGCTTCGCCGGAGGATCTGCACGAAAT
GGATATCGTTGAGGACTACGAAACCTACGAGGATTACCTTGACTCCCAGA
TGTCGTCGGGCAAGAAGAAAATGGCTTCGCCGGAGGATCTGCACGAAATG
GATATCGTTGAGGACTACGAAACCTACGAGGATTACCTTGACTCCCAGGT
TACGAAGACGGACATGCACTATCTCCAGGACGAGGATATTGCGCGGCAGT
TGGTTGAGCTCGGCTATCGTGGATCGGGGGACACTCTCCAGAGGTTACGA
AGACGGACATGCACTATCTCCAGGACGAGGATATTGCGCGGCAGTTGGTT
GAGCTCGGCTATCGTGGATCGGGGGACACTCTCCAGAGGGAGGAGTTCGA
GGCTCGGAAGAAGGCCTTGCTAGAGCGCAGTAACCAGAAGACCAATGTAC
CTAAACAGCTGTCTAGCGCCGGGAAGGGAGGAGTTCGAGGCTCGGAAGAA
GGCCTTGCTAGAGCGCAGTAACCAGAAGACCAATGTACCTAAACAGCTGT
CTAGCGCCGGGAAGGATCTGAGCGCATCTCCGTTTCTCCTGGCTCTGGGC
AACCGAGAAGAGCTCGTGCGCAATGGTAAGCTGACCTGCGTCATCTTCGT
ACGGGATGTGAATAGCAAGGGCCACGAAGTCAGCGGCTACATCGATTACG
CACATCGATTGAGGTCCACCAACTTCGAACCCTACTTCGAGCGCCGCAAA
AAGGATCTGAGCGCATCTCCGTTTCTCCTGGCTCTGGGCAACCGAGAAGA
GCTCGTGCGCAATGGTAAGCTGACCTGCGTCATCTTCGTACGGGATGTGA
ATAGCAAGGGCCACGAAGTCAGCGGCTACATCGATTACGCACATCGATTG
AGGTCCACCAACTTCGAACCCTACTTCGAGCGCCGCAAAAAGCTTATGCC
GAGGCCGACCGATTTAAGCTACTACAACTGGGAGACGCAAACTTCGACGT
CGAATTCCACGCCTAACTTCCAGCTTATGCCGAGGCCGACCGATTTAAGC
TACTACAACTGGGAGACGCAAACTTCGACGTCGAATTCCACGCCTAACTT
CCAGGTCATCGCTGATGGGAAGGCGGGACTCTTGTTCAAGAACAAGCGCG
ACCGCAAAGTGATCAACGTGGACCCTCATGCGCCCCCCGGTGACAACACG
ACGAGAACAGAGATTCGAACGCCCGAGTACCGACAAGTGGTCATTTACGA
TCACATGACGCGGAGGAAAAGTTGAGTCATCGCTGATGGGAAGGCGGGAC
TCTTGTTCAAGAACAAGCGCGACCGCAAAGTGATCAACGTGGACCCTCAT
GCGCCCCCCGGTGACAACACGACGAGAACAGAGATTCGAACGCCCGAGTA
CCGACAAGTGGTCATTTACGATCACATGACGCGGAGGAAAAGTTGA
back to top