mRNA_F-serratus_M_contig896.20331.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.250e-47 Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 1 MKVLSFFIVCVTAVGAFVAPA-PRVSSVVRPAVSSTAMRMGLKEDIQKVATGVSTALLTAAPALATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWAKDQPEGDFFGEYDQRR 342
MK L FF+VC+TAV FVAP PR+S+ VRP+ ++T MRMGLKED+QKVA S A+LTAAPALATEGTGEPLG E+S+ +I+PLF L+ INLLFNNWAKDQPEGDFF EYD+RR
Sbjct: 1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.930e-18 Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 4 KVLSFFIVCVTAVGAFVAPAPRVSSVVRPAVSSTAMRMGLKEDIQKVATGVSTALLTAAPALATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWAKDQPEGDFFGEYDQRR 342
KVL + V A AFVAPA + V S A + G +AT VS ALL+AAPALATEGT E LGI++ +PL + INL+F WA+ QPEG+FFGEYD+RR
Sbjct: 3 KVLLAALCMVAAASAFVAPAAPTAIRATTTVMSAAPKAGA------IAT-VSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.530e-17 Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 4 KVLSFFIVCVTAVGA--FVAPAPRVSSVVRPAVSSTAMRMGLKEDIQKVATGVSTALLTAAPALATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWAKDQPEGDFFGEYDQRR 342
K L+ + V A+GA FVAPA ++T M M + +AT S ALLT+AP LATEGT E GI+ G +PL ++ INL+F WA+ QPEG+FFGEYD+RR
Sbjct: 4 KALTALCLLVAAMGANAFVAPAAPTMR------AATVMSMSAAPKVGAIATA-SAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A0G4F681_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4F681_VITBC) HSP 1 Score: 60.8 bits (146), Expect = 6.010e-8 Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 166 LLTAAPALATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWAKDQP--EGDFFGEYDQR 339
LL ALATEGTGEPLG++ L+ L + +LF NW+K+ P EGDFF EYD+R
Sbjct: 67 LLAPLAALATEGTGEPLGVDSPLQLLAITAIPLSLGILFINWSKENPDNEGDFFSEYDRR 126
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A7V5M5A5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M5A5_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 4.530e-7 Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 184 ALATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWAKDQPEGD-FFGEYDQRR 342
A AT+GTGEPLGI+DS+ LI+ L + + +LF +W+ Q +GD F GEYD RR
Sbjct: 80 AWATDGTGEPLGIDDSRLLIVLLGVFITMLVLFISWSSKQDDGDDFVGEYDPRR 133
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A7J7IM13_9RHOD (PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM13_9RHOD) HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6 Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 121 LKEDIQKVATGVSTAL---LTAAPAL-ATEGTGEPLGIEDSKGLIIPLFGLLLINLLFNNWA-KDQPEGDFFGEYDQRR 342
L + +Q + G++T L LT PA AT+GTGEPLGI+DS+ L++ L + I LF W+ K + DF GEYD RR
Sbjct: 53 LPKVMQSWSAGLTTVLASSLTFGPAAWATDGTGEPLGIDDSRLLVVLLGIFITILALFIGWSSKQDDQDDFVGEYDPRR 131
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: A0A1X6P1X1_PORUM (PSII 6.1 kDa protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1X1_PORUM) HSP 1 Score: 56.2 bits (134), Expect = 1.630e-6 Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 46 AFVAPAPRV-SSVVRPAVSSTAMRMGLKE---DIQKVATGVSTALLTAAPALATEGTGEPLGIEDSKGLIIPLFGLLLINL-LFNNWAKDQPEGDFFGEYDQRR 342
AFVA +P + +S R A ++TA RM + + + ++ TAAP LATEGTGE LGI+++ L +PL G+ + L LF + Q DFFG D RR
Sbjct: 4 AFVATSPLLLASPRRAAATATAPRMAVAPVXXXXAQASASLAALAATAAPVLATEGTGEGLGIDNAL-LYVPLLGIPAVFLFLFLQFGSSQDNEDFFGTIDDRR 106
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Match: L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC) HSP 1 Score: 55.1 bits (131), Expect = 5.270e-6 Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 31 VTAVGAFVAPAPRVSSVVRPAVSSTAMRMGLKEDIQKVATGVSTALL-------TAAPALATEGTGEPLGIEDSKGLIIPLFGL-LLINLLFNNWAKDQPEGDFFGEYDQRR 342
V A AF AP S+ +R ++ AM M +I ++ GV AL AAPA A EGTGE LG++D K L+IP+ + L + LLF +A +Q DFF YDQRR
Sbjct: 11 VAAAAAFTAPH---SAGLRLRSATPAMSMKADSNI-RIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGK-LLIPIIVVPLFVFLLFQGFAANQDNEDFFDTYDQRR 116 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig896.20331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig896.20331.1 >prot_F-serratus_M_contig896.20331.1 ID=prot_F-serratus_M_contig896.20331.1|Name=mRNA_F-serratus_M_contig896.20331.1|organism=Fucus serratus male|type=polypeptide|length=115bp MKVLSFFIVCVTAVGAFVAPAPRVSSVVRPAVSSTAMRMGLKEDIQKVATback to top mRNA from alignment at F-serratus_M_contig896:319922..324336- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig896.20331.1 ID=mRNA_F-serratus_M_contig896.20331.1|Name=mRNA_F-serratus_M_contig896.20331.1|organism=Fucus serratus male|type=mRNA|length=4415bp|location=Sequence derived from alignment at F-serratus_M_contig896:319922..324336- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig896:319922..324336- >mRNA_F-serratus_M_contig896.20331.1 ID=mRNA_F-serratus_M_contig896.20331.1|Name=mRNA_F-serratus_M_contig896.20331.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig896:319922..324336- (Fucus serratus male)back to top |