mRNA_F-serratus_M_contig895.20310.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig895.20310.1
Unique NamemRNA_F-serratus_M_contig895.20310.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig895.20310.1 vs. uniprot
Match: D7FKN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN3_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.220e-40
Identity = 83/134 (61.94%), Postives = 93/134 (69.40%), Query Frame = 3 
Query:   81 MASIIPLIVGLAVVCLCVPESADAFFIGAGRPVTCQGQVSRRSCGGGGLYMAKHRQNKATKKHVKERPRKTSLSDRNHKPPVYSIEVMTNGNFPGAPPVWELLEEPAEGIDTKASVIEKLASAKWDAEHPVEAA 482
            MA +  ++ GL VVC C+  + DAFF G   P +  G       G G L MAKHRQNK TKKHVK RPRK+ LSDRN KP  YSIEV TNGNFPGAPPV+EL  EP EGIDTKASVIE LASA+WDAE   + A
Sbjct:    1 MAPVGRVVGGLVVVCACLAPATDAFFTGVALPSSRAGAARG---GNGALEMAKHRQNKGTKKHVKNRPRKSRLSDRNRKPTDYSIEVNTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWDAEQAAKPA 131
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig895.20310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKN3_ECTSI3.220e-4061.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig895contigF-serratus_M_contig895:154478..160356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRibosomal protein L6, chloroplast
Ec32 orthologEc-09_000870.1
Exons3
Model size974
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig895.20310.1prot_F-serratus_M_contig895.20310.1Fucus serratus malepolypeptideF-serratus_M_contig895 154558..160194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932603.2691858-UTR-F-serratus_M_contig895:154477..1545571622932603.2691858-UTR-F-serratus_M_contig895:154477..154557Fucus serratus maleUTRF-serratus_M_contig895 154478..154557 +
1690964381.863906-UTR-F-serratus_M_contig895:154477..1545571690964381.863906-UTR-F-serratus_M_contig895:154477..154557Fucus serratus maleUTRF-serratus_M_contig895 154478..154557 +
1622932603.3267984-UTR-F-serratus_M_contig895:160194..1603561622932603.3267984-UTR-F-serratus_M_contig895:160194..160356Fucus serratus maleUTRF-serratus_M_contig895 160195..160356 +
1690964381.9015841-UTR-F-serratus_M_contig895:160194..1603561690964381.9015841-UTR-F-serratus_M_contig895:160194..160356Fucus serratus maleUTRF-serratus_M_contig895 160195..160356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932603.2833333-CDS-F-serratus_M_contig895:154557..1546721622932603.2833333-CDS-F-serratus_M_contig895:154557..154672Fucus serratus maleCDSF-serratus_M_contig895 154558..154672 +
1690964381.8741164-CDS-F-serratus_M_contig895:154557..1546721690964381.8741164-CDS-F-serratus_M_contig895:154557..154672Fucus serratus maleCDSF-serratus_M_contig895 154558..154672 +
1622932603.2950432-CDS-F-serratus_M_contig895:159148..1592431622932603.2950432-CDS-F-serratus_M_contig895:159148..159243Fucus serratus maleCDSF-serratus_M_contig895 159149..159243 +
1690964381.8833542-CDS-F-serratus_M_contig895:159148..1592431690964381.8833542-CDS-F-serratus_M_contig895:159148..159243Fucus serratus maleCDSF-serratus_M_contig895 159149..159243 +
1622932603.311391-CDS-F-serratus_M_contig895:159672..1601941622932603.311391-CDS-F-serratus_M_contig895:159672..160194Fucus serratus maleCDSF-serratus_M_contig895 159673..160194 +
1690964381.8925817-CDS-F-serratus_M_contig895:159672..1601941690964381.8925817-CDS-F-serratus_M_contig895:159672..160194Fucus serratus maleCDSF-serratus_M_contig895 159673..160194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig895.20310.1

>prot_F-serratus_M_contig895.20310.1 ID=prot_F-serratus_M_contig895.20310.1|Name=mRNA_F-serratus_M_contig895.20310.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MASIIPLIVGLAVVCLCVPESADAFFIGAGRPVTCQGQVSRRSCGGGGLY
MAKHRQNKATKKHVKERPRKTSLSDRNHKPPVYSIEVMTNGNFPGAPPVW
ELLEEPAEGIDTKASVIEKLASAKWDAEHPVEAAEAKAAAATMKTSAVTK
LPPKIADEIKEAPADGVIGAAVEKAVAEAITGEVAGVVAGEGGEEVAITD
DVADTVAEVVAKTVTEEVASVVAEAEAKLEEEKAEVGEGGGQA*
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mRNA from alignment at F-serratus_M_contig895:154478..160356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig895.20310.1 ID=mRNA_F-serratus_M_contig895.20310.1|Name=mRNA_F-serratus_M_contig895.20310.1|organism=Fucus serratus male|type=mRNA|length=5879bp|location=Sequence derived from alignment at F-serratus_M_contig895:154478..160356+ (Fucus serratus male)
GTCGCGCTCAGTACTACTGCCGGTATTGAGACCCCAACGATTCAACAAGG
GTCTCGAGGATAATCTTGGAACTGAAAGGGATGGCGTCTATTATTCCTTT
GATCGTAGGGCTAGCGGTCGTGTGCTTATGTGTGCCGGAGTCCGCTGACG
CGTTCTTCATTGGTGCGGGCCGGCCTGTTACATGTCAAGGACAAGGTACG
TTTTGAACATGATGAACCTATCATGTGCTGTCCGTGCTCGCAGGGATGCA
TATACTCCTTACAGAGATTGGTGTATGGATGCTCCTCGCAGAGGCTATCT
ACGGTGCTCTGAAGTGTCATTACAATATGTTTTTGTCACGAATGGGGTTC
AACTATCAGAAGGTCTAGGTTTGGTCTTCGAGTAGTAGCGTGAGGACATG
AAGCGCCCTCTCAGTCGCACCATGTGGGGCAGGCAGACCCAAGTGTCGAA
TGCCGACCCGCATCAACGCAGCGTCCTATCATTTGCAACACATTAGAGGG
TCTGTTCTTGAGATCTCCATGATCACCCTTTCAGTAACGCGGGTTGGAGT
TGGATCAACCTTACGGGTCAGCTTCTTGTCGTGTGCAGCACACTGCGCGC
ACCTATTGGAGCTTAAATTTGACCTGTGCTGGTACGCGCATTTATGTACT
GTACATAGAACACTATCTCTCACTGTAAGTACGAATAGCATAAACTGTAC
CAGTACTGTACTGTACTGTACTGTACAGTTTTGAAAAACATGTATGTTTA
TTAGAGTCTTTCTGGATTGCCCACTTCATACCAATAGTGGGTGTGGGAAA
GAGAGGGGCATATTAATTGGTCCATGGTGACCTGCAGAATTGCAGCACCC
GTTGCTGGAACTACCTTGTGGACTACTGGCCCTGTGCCAGCGGACTCTCG
GCGGTGAACGTCATCGGTACGCAATTGCGTGATCCGATAAACGCGGGACT
GACCCGATGGCGTATGGCGGTTCGTCACAAATATCAAAAGGAAGGATCAA
CCGGGTAAGGTTACCAATCCTGCTCGTGATGAGCTGATCAGGAAAAATGA
ATATTTCCGTGTCCCCGTACGCGCCTGAGAATTTGGTCCCGCGAGACGGG
TTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATTCTCCATACTCCGGCTG
AATCTGGTGCTTACTCACGGGATTCCTCTCGATTTTCGTGCGGCGTCCAT
TTCTTTATTTAAACCGCCATACGCCATCGGGTCCGTCCCGAGTTTATCGG
GTCACGCAACTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCAC
AGGGCCAGTAGTCCACAAGGTAGTTCCAGTAACGGGTGCTGCCATTTTGC
AGCTCACCTTGGACCAATTGATGTGCGCCTCTATTTTCCCACACCCACTA
TTGGTATGAAGTTTGAAGTTTGTACTACAATGTCTTGTGTTTTGTTGCGT
TTGGTGTCGCCGACATACTACAACAGTAGTTGTTGACCCAATACTAAATA
CCATCGGAGAACCCGTTTAAATGTCATGGAGAGGTTTTGTCTTTGCAGCC
TATAAAACAGCTTATTATTACTACTATGTTTGATGATGTAGTCCATTGAT
TCCTTTTGGTTGTTTCTGTTTTTTCTGGTGTCCCTGCATGGCGGTTAATG
TAAGTGTACAGTATAACGGTGGGCTTCTCCCCGATATTATCTATGGCCAC
ACATAAAGCAAGAGGATGGATCAACCGGGTAAGGTTGCCAGTCCTGCACG
TGGTCAGCTGAACAGGAAAAATGAATGTTTCCATGTTCGCGTTCGTGCCT
GAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCC
TGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCT
CCCTAGTTCCGCGGCGGCGTCTATTTATTTATTTATAACCGCCATACGCC
ATCGGGCCAGTCCCGAGTTTATCAGGTCACGCAATTGCGTACCGATGGCG
TTCATTATCGAGTTCGCCGGCACAGGGCCAGTAAACGTCAAAGTAGTTCC
GAACAAGTACTGCCTTGGCAGGTCACCATAGACCAATTAGTATTCGCCTC
TCTTATACTGTTGACCCAATGTTACTATTATACCATAGGGGAACCCGTTC
AAATGCCATGAAGTGGTTTTGTATTCGCAGCCTACGATCCCCCACCTAAA
GGTTTTGACATTTTTCCCCCTGACTGGGGCACGCTCAGCTCAGAAGGTCT
AGAAGCGTTCAGATTTTTCTTTATACCCACGGGGAAATCAGTTTTATCAT
TTTATGTGATAGGTACCTTTATGCTGGACTAAGCCGATGGGGGTTGACGT
TATATCATATGTGGACGTCGTCGCGGAAAGCGGGGGGAATCCTGTGAGTA
AGCACCAGATTCAGCCTAAGTATGGAGAATAAGCGGGCTGACGCGGGATG
AGACGGCCGAACCGGTCTGGCGAGGCCAAATTGTCAGGCGCGAACGGGGA
CAGGCAAAAGTCACTTCCAACCATCGTCCCTGTTCAGCTGACCGCAAGCA
GGATTGGCATCTGGTATCGGGTACGTACACAACCCGGTGGTTTTTGAGGT
TTGAGATGGACAGAACCATGATTTTTACTGCGCCGTCGCATCCCCTTGTT
GTTTGTTGTTGCTGTGGACTTAAGACTCGTCGTGTTTATTCTTTGTTTGG
CCGCACTCACAACTCCCGAGCTTAAGTTGAGAGTGAGAATCCGACTGAGT
TTAGACTCTCCTGTCAACATATCCTGCACTCTTCATGGAAAAAATCTGAA
GGCATCTAAACCTTCCGAGCATCCACACACTCGGATTTCAGCCTATCTTT
ATCGCTCATGTCCACTGATTAACCAATAGTGGGTATGGGAAAAGAGAAGC
GCGCGTTGATTGGTCCATGGGGTTTCCTGAAGAGGCAGCACCTATTACTC
CAACTACCTTGAGGTTTACTGGTCCTGTGCCGGCGGGCCCTCGGCAGTGA
AAGCCATCGGCACGCAAATAAAATGCGTGACCCGTTGAACTAGGGACTGT
CCCGGTGGCGGTTGGCGGTATACATGGACGCCATCGCGGAAAGCAGGAGG
AATCCCGTGAGTAAGAGCACGATTCAGCCTGAGTGTGGAAAATGAACGGG
CTAACGCAGAGAACAACAGGACGACCGGACCCGTCTGGTGAAACCAAATT
CTCAGGCGCGAACGGGGACAGGGAAAATCCATTGTCCGCGTTTAGCTCAC
CACGAGCAGGATTTGGCAACCATGCCGGTTGATGCTCAGTTTGCTGAACG
CGATAACCATACATACATGCATACTGTCCGAGGCGATTGTGTCGAAATGT
TTGGTAAGGAACACTGGTATGTCCGGAACGAAAACTCTGTATGGAGCTCC
CCATAATGTACACGCCTCCATCCGTTGGAACTACTTACCACCTTTCGCAA
TATGACTATTAATATTAATATGATTACCTACATTGTTGTCTCTTTGTACG
ATAGCTAACTCTGCACCATAAAATAGGACACGAACAGTAGAAAAGGAGCA
CTCTGTTTTTTTTGGAGTTGCAGCCATCTCAGTTTGTATTTAATAATAAT
TAATACCTTCGTAGTCGGTCATATATAGAGCTATAATTAGTAAGTGATTT
TCTTGTGTATACATGTGTCCTGAAAACACAGATGGGACACGTCGGTTGTA
AGCTAAAATGAAGGGCGTCGATTGTGTCCGACACAACAACCCGTCGTGAA
ACATACGTACCTAAGCGTAACTTGGGTGTTACGATCGATATGAGTGATGC
ATACCTGTAGCAGTCCTTTACGCTGTACGATACCCCGTGCGCGGATTTTT
GTCCTCTCAAGGGGGGCTTCCTGTACGCGGAAAAGCATCTCCTTATTTTG
ACGAGGAGGATGACAGAGTAGTTTCGTCGGAAATCATGTACATATTTGTG
AAGCGCCTCTACAGCAGTACTGTCTTCTAGCAGATGCAGCAATATAAATT
GGCCCCCATGACCCGGCACGAAAATGACCACCAGGGTTTCCATGTTATGC
TCGCAATGGATGTCATGAAAATATGGGCTTGCTGAAATCTTGAGCCTAGC
TTTAGGTATTTGCTGTGTAAATATATAAAAAAGCAACATATATAATGGGC
GAGTTTGTACCCCGGCATTTTGCCCTGATGATATCCCGCGGCGACTGTGA
AAATAATTGGGAAATTCATCCACAGTTGAGTTGGAGGATTTTCTAAAAAT
TCGCAATAACAACTACAACTCGATTCGGAAAAAACGTCCCCCGAGGTCCC
CCCAGATTTTCACTGCAGTTGCGGAAAATCAACGATTCGATATTTTTTCC
GGGGGACTGCCAGACTGGGTCGCGTCTTCAGGTTCGACGAAAACTCGTCC
CCTGTCCTGTCATCTCCCTCGCGTCATGGTAAACACTAATAATATTATAC
TACCACTGCACCATAAAAACGCCTCTTTACATTTTCAAGGTAAAATCGCG
CCGTTGCCATATACTGCCGTGGGCATCAAGGTAACCGCGGTATACTATTA
CTACTTACTATTCAATACCTGCAGCACGCGCTTACGTGCTCCCCGGAGTA
AAGACATATTTTAACAAATTCTACTTCCGCGATGAATTACCCGCTCTTTC
TCTCTCTCTCTCTTTTAACAGTGTCACGGCGAAGCTGTGGAGGCGGAGGA
CTGTACATGGCCAAGCACCGGCAAAACAAGGCCACGAAAAAGCACGTCAA
GGAAAGGCCGCGCAAGGTATTTAAAGTAGTACACAGCAGCAGGGGCAAGA
TTTTTTTTCGTGCCTGGTACCTGACAATGGAGGGTGTAGGCAGGTATTAG
TAGGTGGCATCGAGTGCCCCGCTTGCTTGGCGTCAAGCGAGCGTCTCTCT
CGTTTTGCCGTCGTGGGCAAGTCGTTCTGTCGACAACAACCGGCCACCAC
ACATGAGTCTATCGCGTGAGTTCCCATGTGCAGGCGTGAAACGTGATGAC
GTACTCTCTATTGTAGTATTTTAGTATTTTTCCCGATACAGTAGAGAGTA
CGTCATTGAGCTAGAGCTGCATTCGCGTCCATCGCTCATGTGTGTTACAC
TGGAGCGTTGAACGATGGCCCCCCTTGCCCCCCCCTCCTTCGCCGCCCGT
CCACAACTTGTACACTCCAAAACAATTCCCCTCGAAAAAAAAAAGACGAG
TCTCTCCGACAGGAACCACAAGCCCCCGGTGTACTCGATCGAGGTGATGA
CCAACGGGAACTTCCCCGGCGCGCCGCCCGTCTGGGAGCTACTCGAGGAA
CCCGCCGAAGGGATCGATACCAAGGCTTCCGTCATCGAGAAGTTGGCGTC
AGCAAAGTGGGACGCCGAGCACCCTGTTGAGGCCGCCGAGGCGAAGGCCG
CGGCTGCGACGATGAAGACCTCGGCTGTTACCAAACTTCCCCCCAAGATC
GCCGACGAAATTAAGGAGGCGCCAGCTGATGGGGTTATAGGGGCTGCCGT
GGAAAAGGCGGTGGCCGAAGCAATCACGGGAGAGGTGGCAGGCGTCGTTG
CGGGGGAAGGGGGGGAAGAGGTGGCCATCACCGACGACGTAGCTGACACG
GTTGCCGAAGTGGTAGCGAAGACTGTGACGGAAGAGGTCGCGAGCGTAGT
CGCAGAGGCTGAGGCGAAGTTAGAGGAAGAAAAGGCGGAGGTGGGGGAGG
GGGGGGGGCAAGCATAGGCGGAACTGAACGTGGAGGTGCACCAGCCGAAG
CCGAAGCCGCCCCTACAAAGGGAAGGACGGCGTAGATAGCTCGCACCTCT
TTTTTCCTGTGGCGGGGTTGTTGGAGTGGCCGGCTGTCGTTGTGGTTGTC
CATACGGGGGTCCCTGTCGGGCTCTTTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig895:154478..160356+

>mRNA_F-serratus_M_contig895.20310.1 ID=mRNA_F-serratus_M_contig895.20310.1|Name=mRNA_F-serratus_M_contig895.20310.1|organism=Fucus serratus male|type=CDS|length=1464bp|location=Sequence derived from alignment at F-serratus_M_contig895:154478..160356+ (Fucus serratus male)
ATGGCGTCTATTATTCCTTTGATCGTAGGGCTAGCGGTCGTGTGCTTATG
TGTGCCGGAGTCCGCTGACGCGTTCTTCATTGGTGCGGGCCGGCCTGTTA
CATGTCAAGGACAAGATGGCGTCTATTATTCCTTTGATCGTAGGGCTAGC
GGTCGTGTGCTTATGTGTGCCGGAGTCCGCTGACGCGTTCTTCATTGGTG
CGGGCCGGCCTGTTACATGTCAAGGACAAGTGTCACGGCGAAGCTGTGGA
GGCGGAGGACTGTACATGGCCAAGCACCGGCAAAACAAGGCCACGAAAAA
GCACGTCAAGGAAAGGCCGCGCAAGTGTCACGGCGAAGCTGTGGAGGCGG
AGGACTGTACATGGCCAAGCACCGGCAAAACAAGGCCACGAAAAAGCACG
TCAAGGAAAGGCCGCGCAAGACGAGTCTCTCCGACAGGAACCACAAGCCC
CCGGTGTACTCGATCGAGGTGATGACCAACGGGAACTTCCCCGGCGCGCC
GCCCGTCTGGGAGCTACTCGAGGAACCCGCCGAAGGGATCGATACCAAGG
CTTCCGTCATCGAGAAGTTGGCGTCAGCAAAGTGGGACGCCGAGCACCCT
GTTGAGGCCGCCGAGGCGAAGGCCGCGGCTGCGACGATGAAGACCTCGGC
TGTTACCAAACTTCCCCCCAAGATCGCCGACGAAATTAAGGAGGCGCCAG
CTGATGGGGTTATAGGGGCTGCCGTGGAAAAGGCGGTGGCCGAAGCAATC
ACGGGAGAGGTGGCAGGCGTCGTTGCGGGGGAAGGGGGGGAAGAGGTGGC
CATCACCGACGACGTAGCTGACACGGTTGCCGAAGTGGTAGCGAAGACTG
TGACGGAAGAGGTCGCGAGCGTAGTCGCAGAGGCTGAGGCGAAGTTAGAG
GAAGAAAAGGCGGAGGTGGGGGAGGGGGGGGGGCAAGCATAGACGAGTCT
CTCCGACAGGAACCACAAGCCCCCGGTGTACTCGATCGAGGTGATGACCA
ACGGGAACTTCCCCGGCGCGCCGCCCGTCTGGGAGCTACTCGAGGAACCC
GCCGAAGGGATCGATACCAAGGCTTCCGTCATCGAGAAGTTGGCGTCAGC
AAAGTGGGACGCCGAGCACCCTGTTGAGGCCGCCGAGGCGAAGGCCGCGG
CTGCGACGATGAAGACCTCGGCTGTTACCAAACTTCCCCCCAAGATCGCC
GACGAAATTAAGGAGGCGCCAGCTGATGGGGTTATAGGGGCTGCCGTGGA
AAAGGCGGTGGCCGAAGCAATCACGGGAGAGGTGGCAGGCGTCGTTGCGG
GGGAAGGGGGGGAAGAGGTGGCCATCACCGACGACGTAGCTGACACGGTT
GCCGAAGTGGTAGCGAAGACTGTGACGGAAGAGGTCGCGAGCGTAGTCGC
AGAGGCTGAGGCGAAGTTAGAGGAAGAAAAGGCGGAGGTGGGGGAGGGGG
GGGGGCAAGCATAG
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