mRNA_F-serratus_M_contig893.20296.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig893.20296.1
Unique NamemRNA_F-serratus_M_contig893.20296.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig893.20296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig893contigF-serratus_M_contig893:7285..10607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002100.1
Exons5
Model size2092
Cds size1491
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932600.8156495-UTR-F-serratus_M_contig893:7284..73191622932600.8156495-UTR-F-serratus_M_contig893:7284..7319Fucus serratus maleUTRF-serratus_M_contig893 7285..7319 +
1690964380.527459-UTR-F-serratus_M_contig893:7284..73191690964380.527459-UTR-F-serratus_M_contig893:7284..7319Fucus serratus maleUTRF-serratus_M_contig893 7285..7319 +
1622932600.920149-UTR-F-serratus_M_contig893:10041..106071622932600.920149-UTR-F-serratus_M_contig893:10041..10607Fucus serratus maleUTRF-serratus_M_contig893 10042..10607 +
1690964380.6336532-UTR-F-serratus_M_contig893:10041..106071690964380.6336532-UTR-F-serratus_M_contig893:10041..10607Fucus serratus maleUTRF-serratus_M_contig893 10042..10607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932600.8294322-CDS-F-serratus_M_contig893:7319..74261622932600.8294322-CDS-F-serratus_M_contig893:7319..7426Fucus serratus maleCDSF-serratus_M_contig893 7320..7426 +
1690964380.5382664-CDS-F-serratus_M_contig893:7319..74261690964380.5382664-CDS-F-serratus_M_contig893:7319..7426Fucus serratus maleCDSF-serratus_M_contig893 7320..7426 +
1622932600.8441105-CDS-F-serratus_M_contig893:7730..77851622932600.8441105-CDS-F-serratus_M_contig893:7730..7785Fucus serratus maleCDSF-serratus_M_contig893 7731..7785 +
1690964380.5475924-CDS-F-serratus_M_contig893:7730..77851690964380.5475924-CDS-F-serratus_M_contig893:7730..7785Fucus serratus maleCDSF-serratus_M_contig893 7731..7785 +
1622932600.8656678-CDS-F-serratus_M_contig893:7959..80951622932600.8656678-CDS-F-serratus_M_contig893:7959..8095Fucus serratus maleCDSF-serratus_M_contig893 7960..8095 +
1690964380.5854244-CDS-F-serratus_M_contig893:7959..80951690964380.5854244-CDS-F-serratus_M_contig893:7959..8095Fucus serratus maleCDSF-serratus_M_contig893 7960..8095 +
1622932600.8850453-CDS-F-serratus_M_contig893:8619..87951622932600.8850453-CDS-F-serratus_M_contig893:8619..8795Fucus serratus maleCDSF-serratus_M_contig893 8620..8795 +
1690964380.6047812-CDS-F-serratus_M_contig893:8619..87951690964380.6047812-CDS-F-serratus_M_contig893:8619..8795Fucus serratus maleCDSF-serratus_M_contig893 8620..8795 +
1622932600.9023485-CDS-F-serratus_M_contig893:9024..100411622932600.9023485-CDS-F-serratus_M_contig893:9024..10041Fucus serratus maleCDSF-serratus_M_contig893 9025..10041 +
1690964380.6224995-CDS-F-serratus_M_contig893:9024..100411690964380.6224995-CDS-F-serratus_M_contig893:9024..10041Fucus serratus maleCDSF-serratus_M_contig893 9025..10041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig893.20296.1prot_F-serratus_M_contig893.20296.1Fucus serratus malepolypeptideF-serratus_M_contig893 7320..10041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig893.20296.1

>prot_F-serratus_M_contig893.20296.1 ID=prot_F-serratus_M_contig893.20296.1|Name=mRNA_F-serratus_M_contig893.20296.1|organism=Fucus serratus male|type=polypeptide|length=497bp
MSDPTDEKLVSVVWDYIRPSSSFQNSGRYAPPETPRVHSFPTTPRTEPAT
VDVRPPVGGLGTDSRKTKHNPYQVGFTSFERRFSYLRQQNGRMPRSPGPG
AYEFRHVNGGAMVKRPMVASPCFCRPEGRLNFGQTGTWHQETPLTRAEIR
ATIHGDLKIQPLRYSQSFRSKADRLVVNKPPKTTHAGIGPGSYDLTKDGK
SVSVKVEKRVGRGGTNGCDIMTNPLLSPWRAFMQPRVLDGNAQPVPEGSN
GYCEEGKIRGNSATKNPSLLRCRELHAKSQKPVRVNCMANDWHERSRKAA
EMPDAGGMFHFVRRRKESEREQPERRGRDDCDAREQKVLSCHREQRQQLQ
GQKRPGSSRSRRPSTASCFSRRRSPLAAARAPDSSKTSNKSQNKDGGGKE
EEASMHPATTIVRHNLKTQRGEWNRRHPTDTSPTNGTVPHNWGGGRGTII
VDQEKTSSTDSAPINPRLLIPHPPNTNAVARPRTASPSRRENPKIY*
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mRNA from alignment at F-serratus_M_contig893:7285..10607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig893.20296.1 ID=mRNA_F-serratus_M_contig893.20296.1|Name=mRNA_F-serratus_M_contig893.20296.1|organism=Fucus serratus male|type=mRNA|length=3323bp|location=Sequence derived from alignment at F-serratus_M_contig893:7285..10607+ (Fucus serratus male)
GCAGAACCTAACGCCGTCCTCAAATCTCGCTTACAATGAGTGATCCGACA
GACGAAAAGCTCGTCAGTGTCGTCTGGGACTACATCCGACCATCCTCCAG
CTTTCAAAATAGTGGTCGGTATGCTCCTCCGGAAACCCCGAGGTGACTCA
GTTCTTGTTTGATGCTGGTTGATGGCTTAAACTTGTCTTCAATATACACT
TGCGATGGGGATGTTACAGCAACCCCCAAATCCCGAGATAAGGGTACGTA
AAAGGTGCTTTTTTTCCTGGCTTGCTTCTGCGAAATGATACAAGCAGTCT
ACGAGGAAAACCTCATGGACGGTGGTGGCATATAAACCGACTCACATTCG
ACTAGATCGTTCTTGAGCAGCGGCTCCACCGGTTATCCTCAAAATCACTG
CTCGTTCCCTGTCTCTATATTCCCTTGTGGTGATGGTTGGTGTCAGGGTG
CACTCCTTTCCGACGACGCCAAGGACGGAGCCTGCCACAGTGGACGTGAG
AGTTTGTTGTCGTATTCACGCATGCCTCTTTATCAATGGTGCTGATGTCG
ATGCCACTTTTCGCGCGGTTTGATTTAAAGTGCAACATGACCCCGAGAAA
ATGTCGCACTTTTTGAAATTTTCCATTTTGCATACTAATATTTACATAGA
TTGTTACATATTTTTCTGTGTAAAGCCACCAGTCGGAGGTCTTGGGACCG
ACAGCCGGAAGACGAAGCACAATCCATACCAAGTAGGGTTCACATCGTTT
GAACGTCGCTTCAGCTACCTCAGGCAACAGAACGGGCGGATGCCCCGCTC
TCCTGGGCCGGGTGAGCGCTTTTTTGTCGTCATTGAGCAACACCTCAACG
GAATATCTCTAGCTATTGCTTACGTAATTAAGACTGTCGTCTAGCGTGGA
AAATGCTGCAAAACGTTGCCGTACGACCATTCATCTACAAGTAAAGTCTA
CTGTATGAACTGTTGATGTTTGTTACAAATTTCGTCGGAGGATTGCCGAG
GTATTTTGGGACCTGCCGTCGTTTCCTTGCTGCGAACAGATCGGTACCTT
ACCGGACAAACTGAACAAAACGCCGCTCGTTTCCTTTCAAAACGTGAAGG
GCAAGGATAAGGAGCTCTGAGCGGACGATCCTTGTTCAGAGAACAGGGCG
GTCTTTGTAGCATCTCACCGCCGTCGTATACATTGATAAACGTAGAGTAC
AACCCTCAAGCCGCAACTATAAATAGATTTAGAGAACTCAGACGCAGAAC
ATGCTGTGAATTAGCTTGATGGTACTGTAGGTAAACCGACGAGCTTGTGT
CACATTATGGCTCATCTGTGTGTTGGCACTTTCAGGCGCATATGAATTTC
GTCACGTCAACGGCGGAGCGATGGTGAAGCGTCCCATGGTAGCGTCACCG
TGTTTCTGCCGCCCGGAGGGGCGTCTGAATTTCGGGCAGACGGGAACGTG
GCACCAGGAAACGCCACTCACCCGCGCAGAAATACGCGCTACTATACACG
GCGACTTGAAGGTGTCTCAGGATAGAAAACATCCAAGAATCTTTACTGGA
AAACATCGCTCCCGTTAACGTTTGTTCCCTCGATCATAATTGTTTCGATA
TCCCTCGCGTCAATGTTCCCTGTATCGGAAAAATTACCAAGCCCGCTGCA
CGGGGGTGAGGGTTAATGAGTAAAGTAGCATCATGCCTCGAGACTCAATT
TTGCCAGCGACCCCGCTTGTCTGGTTTTGCCTCGCTCCAGATTCAGCCCT
TGCGCTACAGTCAAAGCTTTCGTTCAAAAGCCGACCGCCTGGTGGTCAAC
AAGCCCCCTAAGACCACCCACGCGGGCATCGGACCGGGGTCTTACGACCT
AACAAAGGACGGAAAGTCCGTGAGCGTAAAGGTGGAGAAACGTGTGGGTC
GTGGTGGTACCAACGGATGTGATATCATGACGAACCCTCTTCTCTCGCCT
TGGAGAGCGTTCATGCAACCGCGGGTATTGGATGGCAATGCGCAACCCGT
TCCGGAGGGAAGTAATGGTTATTGTGAAGAGGGGAAGATCCGTGGCAACT
CTGCGACGAAAAACCCTTCGCTACTACGTTGTCGTGAACTACACGCAAAA
TCGCAGAAGCCCGTACGGGTCAACTGTATGGCAAATGACTGGCACGAGCG
TAGTCGAAAGGCAGCTGAAATGCCGGATGCGGGGGGAATGTTCCATTTCG
TGCGGCGGCGAAAAGAATCTGAAAGGGAACAGCCAGAACGACGTGGACGA
GATGATTGTGATGCCCGAGAACAGAAAGTATTGAGTTGCCATCGCGAGCA
GCGGCAGCAGCTACAAGGCCAAAAGCGGCCGGGGTCCTCGAGATCACGCC
GACCATCAACGGCCAGTTGTTTCTCTCGCAGGCGCTCCCCATTAGCTGCA
GCTCGGGCGCCGGATTCATCGAAGACTTCAAACAAGTCCCAGAACAAAGA
TGGCGGGGGAAAAGAAGAGGAGGCCTCGATGCACCCCGCCACCACGATTG
TCAGGCATAATTTGAAGACACAACGTGGGGAGTGGAACAGACGCCATCCA
ACCGATACAAGCCCGACGAACGGGACTGTGCCGCATAATTGGGGAGGGGG
GCGTGGCACTATTATCGTAGATCAAGAAAAAACGAGCTCGACGGACTCCG
CGCCCATCAATCCACGATTGCTTATTCCCCACCCACCAAACACAAACGCT
GTAGCAAGACCGCGAACGGCGTCACCGTCCAGAAGGGAAAACCCGAAAAT
ATACTAGGTCAACGCCCGAATCAGGAAAGCCACGAAGAAGCGCTATAATC
TACGCGAGCACGTTGAGCTACGTTCTGCTGCTCGCTTAGCGAAAGCATCT
TGGTCAGGTACCCATCGGTACACGCGCACTCGGAAGAAACTGCCGAAGAC
CCAAAATGTTCTTCTCTTATGCGAAGCTTGAGTATGTCTGATGTGTCATG
GGGAAATTGCTAAATGGCGGTGGTGGCAGTGTCTTCCGATATACATTGAT
CAATAACGACAACTCATTATGTTGGCAAACGACAAGTTGGCGAACGGCAT
AAAGTTGGGATATCCCAGGACATGGGTTGAAAGGATAAGACTCCAAAATG
CGGATAGATCGGTAGATCGTTGCAACCATTAGGATGTTAGGAGAGGTTCC
CGTATTTCTATCGTTTGGTACGTACTAGGGAAACCAGTGTTCCTGACGAC
CCCTTCATAATAGTTCAATATTTGGACCACCAGGTGTCTTGTGTCCACCA
GTTGTCTTGTGTCTCTGTATGTACCCAAGATGTGGTCCACCAAGATACTA
TAATAATATATTAGTTTTATATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig893:7285..10607+

>mRNA_F-serratus_M_contig893.20296.1 ID=mRNA_F-serratus_M_contig893.20296.1|Name=mRNA_F-serratus_M_contig893.20296.1|organism=Fucus serratus male|type=CDS|length=2982bp|location=Sequence derived from alignment at F-serratus_M_contig893:7285..10607+ (Fucus serratus male)
ATGAGTGATCCGACAGACGAAAAGCTCGTCAGTGTCGTCTGGGACTACAT
CCGACCATCCTCCAGCTTTCAAAATAGTGGTCGGTATGCTCCTCCGGAAA
CCCCGAGATGAGTGATCCGACAGACGAAAAGCTCGTCAGTGTCGTCTGGG
ACTACATCCGACCATCCTCCAGCTTTCAAAATAGTGGTCGGTATGCTCCT
CCGGAAACCCCGAGGGTGCACTCCTTTCCGACGACGCCAAGGACGGAGCC
TGCCACAGTGGACGTGAGAGGTGCACTCCTTTCCGACGACGCCAAGGACG
GAGCCTGCCACAGTGGACGTGAGACCACCAGTCGGAGGTCTTGGGACCGA
CAGCCGGAAGACGAAGCACAATCCATACCAAGTAGGGTTCACATCGTTTG
AACGTCGCTTCAGCTACCTCAGGCAACAGAACGGGCGGATGCCCCGCTCT
CCTGGGCCGGCCACCAGTCGGAGGTCTTGGGACCGACAGCCGGAAGACGA
AGCACAATCCATACCAAGTAGGGTTCACATCGTTTGAACGTCGCTTCAGC
TACCTCAGGCAACAGAACGGGCGGATGCCCCGCTCTCCTGGGCCGGGCGC
ATATGAATTTCGTCACGTCAACGGCGGAGCGATGGTGAAGCGTCCCATGG
TAGCGTCACCGTGTTTCTGCCGCCCGGAGGGGCGTCTGAATTTCGGGCAG
ACGGGAACGTGGCACCAGGAAACGCCACTCACCCGCGCAGAAATACGCGC
TACTATACACGGCGACTTGAAGGCGCATATGAATTTCGTCACGTCAACGG
CGGAGCGATGGTGAAGCGTCCCATGGTAGCGTCACCGTGTTTCTGCCGCC
CGGAGGGGCGTCTGAATTTCGGGCAGACGGGAACGTGGCACCAGGAAACG
CCACTCACCCGCGCAGAAATACGCGCTACTATACACGGCGACTTGAAGAT
TCAGCCCTTGCGCTACAGTCAAAGCTTTCGTTCAAAAGCCGACCGCCTGG
TGGTCAACAAGCCCCCTAAGACCACCCACGCGGGCATCGGACCGGGGTCT
TACGACCTAACAAAGGACGGAAAGTCCGTGAGCGTAAAGGTGGAGAAACG
TGTGGGTCGTGGTGGTACCAACGGATGTGATATCATGACGAACCCTCTTC
TCTCGCCTTGGAGAGCGTTCATGCAACCGCGGGTATTGGATGGCAATGCG
CAACCCGTTCCGGAGGGAAGTAATGGTTATTGTGAAGAGGGGAAGATCCG
TGGCAACTCTGCGACGAAAAACCCTTCGCTACTACGTTGTCGTGAACTAC
ACGCAAAATCGCAGAAGCCCGTACGGGTCAACTGTATGGCAAATGACTGG
CACGAGCGTAGTCGAAAGGCAGCTGAAATGCCGGATGCGGGGGGAATGTT
CCATTTCGTGCGGCGGCGAAAAGAATCTGAAAGGGAACAGCCAGAACGAC
GTGGACGAGATGATTGTGATGCCCGAGAACAGAAAGTATTGAGTTGCCAT
CGCGAGCAGCGGCAGCAGCTACAAGGCCAAAAGCGGCCGGGGTCCTCGAG
ATCACGCCGACCATCAACGGCCAGTTGTTTCTCTCGCAGGCGCTCCCCAT
TAGCTGCAGCTCGGGCGCCGGATTCATCGAAGACTTCAAACAAGTCCCAG
AACAAAGATGGCGGGGGAAAAGAAGAGGAGGCCTCGATGCACCCCGCCAC
CACGATTGTCAGGCATAATTTGAAGACACAACGTGGGGAGTGGAACAGAC
GCCATCCAACCGATACAAGCCCGACGAACGGGACTGTGCCGCATAATTGG
GGAGGGGGGCGTGGCACTATTATCGTAGATCAAGAAAAAACGAGCTCGAC
GGACTCCGCGCCCATCAATCCACGATTGCTTATTCCCCACCCACCAAACA
CAAACGCTGTAGCAAGACCGCGAACGGCGTCACCGTCCAGAAGGGAAAAC
CCGAAAATATACTAGATTCAGCCCTTGCGCTACAGTCAAAGCTTTCGTTC
AAAAGCCGACCGCCTGGTGGTCAACAAGCCCCCTAAGACCACCCACGCGG
GCATCGGACCGGGGTCTTACGACCTAACAAAGGACGGAAAGTCCGTGAGC
GTAAAGGTGGAGAAACGTGTGGGTCGTGGTGGTACCAACGGATGTGATAT
CATGACGAACCCTCTTCTCTCGCCTTGGAGAGCGTTCATGCAACCGCGGG
TATTGGATGGCAATGCGCAACCCGTTCCGGAGGGAAGTAATGGTTATTGT
GAAGAGGGGAAGATCCGTGGCAACTCTGCGACGAAAAACCCTTCGCTACT
ACGTTGTCGTGAACTACACGCAAAATCGCAGAAGCCCGTACGGGTCAACT
GTATGGCAAATGACTGGCACGAGCGTAGTCGAAAGGCAGCTGAAATGCCG
GATGCGGGGGGAATGTTCCATTTCGTGCGGCGGCGAAAAGAATCTGAAAG
GGAACAGCCAGAACGACGTGGACGAGATGATTGTGATGCCCGAGAACAGA
AAGTATTGAGTTGCCATCGCGAGCAGCGGCAGCAGCTACAAGGCCAAAAG
CGGCCGGGGTCCTCGAGATCACGCCGACCATCAACGGCCAGTTGTTTCTC
TCGCAGGCGCTCCCCATTAGCTGCAGCTCGGGCGCCGGATTCATCGAAGA
CTTCAAACAAGTCCCAGAACAAAGATGGCGGGGGAAAAGAAGAGGAGGCC
TCGATGCACCCCGCCACCACGATTGTCAGGCATAATTTGAAGACACAACG
TGGGGAGTGGAACAGACGCCATCCAACCGATACAAGCCCGACGAACGGGA
CTGTGCCGCATAATTGGGGAGGGGGGCGTGGCACTATTATCGTAGATCAA
GAAAAAACGAGCTCGACGGACTCCGCGCCCATCAATCCACGATTGCTTAT
TCCCCACCCACCAAACACAAACGCTGTAGCAAGACCGCGAACGGCGTCAC
CGTCCAGAAGGGAAAACCCGAAAATATACTAG
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