mRNA_F-serratus_M_contig893.20295.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig893.20295.1
Unique NamemRNA_F-serratus_M_contig893.20295.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A835YZX1_9STRA (Flagellar C1a complex subunit C1a-32-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.010e-24
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:  309 KDMRTDDETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGAL 590
            +D+  DD  S  +ASFDRF++LILRH VER PW+ GI + +D+  I +YV  SYYRH+ +YKH+FT RV   + Q + HG EEP +  PL  A+
Sbjct:   54 QDLSQDDPVSGQQASFDRFRDLILRHCVERPPWSVGIFTLEDVAGITEYVVNSYYRHYRIYKHLFTARVETTLTQRNLHGTEEPRIPPPLCEAM 147
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A6A3P3Y5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P3Y5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 3 
Query:  315 MRTD---DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMSTHQPASDKHINLGDQESA 653
            MR D   + T+ L++SFD FQE++L H+V R P + G+ S +++ AIVDYV+ SYYRHF LYK I+T    V + Q   + V+ P    PL    + ST    S +     D+++A
Sbjct:   83 MRRDFARESTTDLKSSFDYFQEILLTHSVNRSPKSVGVFSREEVTAIVDYVTNSYYRHFQLYKCIYTPYYHVHLVQREINDVQTPKAPRPLSHGFLHSTRPLPSVESTETPDKDTA 198
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A7S2SS91_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS91_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.600e-15
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:  312 DMRTDDETS-SLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEP 560
            D R+ DE S  ++ SF RF+EL+L HAV R PW   + S  D+  I+ Y+  SY+RHF +YK IFT ++ V ++Q  PH VE P
Sbjct:   85 DDRSRDEFSCGMKQSFARFKELVLSHAVNRSPWAVRVFSEDDVARIISYMLNSYFRHFKMYKLIFTRKLQVTLDQSEPHLVEPP 168
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: W2PIE1_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PIE1_PHYPN)

HSP 1 Score: 82.0 bits (201), Expect = 8.150e-15
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMSTHQPASDKHINLGDQE 647
            D T+ L++SF+ FQ ++L H+V R P + GI S +++  IVDYV+ SYYRHF LYK I+T    +   Q   + V+ P  + PL    +++     SD+ +   D E
Sbjct:   86 DSTTDLKSSFEFFQAMLLTHSVNRSPKSVGIFSREEVATIVDYVANSYYRHFQLYKCIYTPYYHLHFVQREINDVQTPKALRPLSQGFLLTAKPMPSDESVKENDAE 192
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A7S2C5F6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5F6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.540e-14
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMS 599
            D ++ +  +F++F+ L+  HAVER P    I S +D+  + +++  SY+RHF LYK+IFT +  V + Q  PHGVE P    PL  AL  S
Sbjct:   27 DASTDMNTAFEKFKALMFAHAVERSPHAVLIFSVEDVEKVTEFMLNSYFRHFKLYKYIFTAKEQVTLVQELPHGVEVPAAARPLDDALTQS 117
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A2P4YVA0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVA0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.610e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMSTHQPASDKHIN-LGDQESAK 656
            D T+  ++SF  FQ L+L H+V R P + GI S +++ AIVDY++ SYYRHF LYK I+T    V + Q   +GV+ P    PL     + T +P      N   D+E+A+
Sbjct:    8 DSTTDFKSSFAFFQALLLTHSVNRSPKSVGIFSREEVAAIVDYITNSYYRHFQLYKCIYTPYYHVHLVQREINGVQTPKAPRPLSQGF-LHTAKPLPQVETNGETDKEAAE 117
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: G4ZYT5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZYT5_PHYSP)

HSP 1 Score: 77.0 bits (188), Expect = 9.530e-14
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMSTHQPASDKHINLGDQE 647
            + T+ L++SFD F++++L H+V R P + GI + +++  IVDYV+ SYYRHF LYK I+T    V + Q   + ++ P    PL    + ST    S +     D++
Sbjct:    8 ESTTDLKSSFDYFEQILLTHSVNRSPKSVGIFTREEVAVIVDYVTNSYYRHFQLYKCIYTPYYHVHLVQREINDIQTPKAPRPLSHGYLHSTRSLPSIESTGTLDKD 114
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A0W8DMZ1_PHYNI (Coiled-coil domain-containing protein C16orf93 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DMZ1_PHYNI)

HSP 1 Score: 80.5 bits (197), Expect = 1.650e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALVMSTHQPASDKHINLGDQE 647
            D T+ L++SF+ FQ ++L H+V R P + GI S +++  IVDYV+ SYYRHF LYK I+T    +   Q   + V+ P  + PL    + +     SD+ +   D E
Sbjct:  201 DSTTDLKSSFEFFQAMLLTHSVNRSPKSVGIFSREEVATIVDYVANSYYRHFQLYKCIYTPYYHLHFVQREINDVQTPKALRPLSQGFLHTAKPMPSDESVKENDAE 307
[Close]
BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: A0A329RNJ7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNJ7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.760e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPL-RGALVMSTHQPASDKHINLGDQESAK 656
            D T++L++SFD FQ ++L H+V R P + GI S +++ AIVDYV+ SYYRHF LYK I+T    V   Q   + V+ P    PL +G L      P  +     G + SA+
Sbjct:   96 DSTTNLKSSFDFFQAILLTHSVNRSPKSVGIFSREEVAAIVDYVTNSYYRHFQLYKCIYTPYYHVHFVQREINDVQTPKTPRPLSQGFLHTVKPMPPGESLKAHGTEISAE 206
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BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Match: K3XA92_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA92_GLOUD)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 3 
Query:  327 DETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIGAIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGALV 593
            D +S+L +SF  FQ L+L H+V+R P + GI S +++ AIVD+V+ +Y+RHF LYK I+T      I Q   +GV+ P    PL  A++
Sbjct:   56 DSSSNLNSSFSHFQTLLLTHSVQRSPKSVGIFSVQEVAAIVDFVTHTYFRHFHLYKGIYTPYYHTHIVQKAVNGVQVPQQPRPLADAIL 144
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig893.20295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZX1_9STRA6.010e-2450.00Flagellar C1a complex subunit C1a-32-domain-contai... [more]
A0A6A3P3Y5_9STRA1.330e-1539.66Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A7S2SS91_9STRA4.600e-1546.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W2PIE1_PHYPN8.150e-1537.38Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A7S2C5F6_9STRA2.540e-1440.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2P4YVA0_9STRA4.610e-1439.64Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G4ZYT5_PHYSP9.530e-1435.51Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0W8DMZ1_PHYNI1.650e-1337.38Coiled-coil domain-containing protein C16orf93 n=3... [more]
A0A329RNJ7_9STRA1.760e-1340.54Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
K3XA92_GLOUD1.180e-1242.70Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig893contigF-serratus_M_contig893:4138..5951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue6.2e-13
Seed eggNOG ortholog112098.XP_008618788.1
Preferred nameCCDC189
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flagellar C1a complex subunit C1a-32
EggNOG OGs29WM8@1,2S7XE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size990
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig893.20295.1prot_F-serratus_M_contig893.20295.1Fucus serratus malepolypeptideF-serratus_M_contig893 4734..5661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932600.605039-UTR-F-serratus_M_contig893:4137..44541622932600.605039-UTR-F-serratus_M_contig893:4137..4454Fucus serratus maleUTRF-serratus_M_contig893 4138..4454 -
1690964380.4451318-UTR-F-serratus_M_contig893:4137..44541690964380.4451318-UTR-F-serratus_M_contig893:4137..4454Fucus serratus maleUTRF-serratus_M_contig893 4138..4454 -
1622932600.6304042-UTR-F-serratus_M_contig893:4725..47331622932600.6304042-UTR-F-serratus_M_contig893:4725..4733Fucus serratus maleUTRF-serratus_M_contig893 4726..4733 -
1690964380.459141-UTR-F-serratus_M_contig893:4725..47331690964380.459141-UTR-F-serratus_M_contig893:4725..4733Fucus serratus maleUTRF-serratus_M_contig893 4726..4733 -
1622932600.7578795-UTR-F-serratus_M_contig893:5661..59511622932600.7578795-UTR-F-serratus_M_contig893:5661..5951Fucus serratus maleUTRF-serratus_M_contig893 5662..5951 -
1690964380.5158954-UTR-F-serratus_M_contig893:5661..59511690964380.5158954-UTR-F-serratus_M_contig893:5661..5951Fucus serratus maleUTRF-serratus_M_contig893 5662..5951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932600.668946-CDS-F-serratus_M_contig893:4733..48021622932600.668946-CDS-F-serratus_M_contig893:4733..4802Fucus serratus maleCDSF-serratus_M_contig893 4734..4802 -
1690964380.4698913-CDS-F-serratus_M_contig893:4733..48021690964380.4698913-CDS-F-serratus_M_contig893:4733..4802Fucus serratus maleCDSF-serratus_M_contig893 4734..4802 -
1622932600.6908333-CDS-F-serratus_M_contig893:5131..52611622932600.6908333-CDS-F-serratus_M_contig893:5131..5261Fucus serratus maleCDSF-serratus_M_contig893 5132..5261 -
1690964380.480715-CDS-F-serratus_M_contig893:5131..52611690964380.480715-CDS-F-serratus_M_contig893:5131..5261Fucus serratus maleCDSF-serratus_M_contig893 5132..5261 -
1622932600.716018-CDS-F-serratus_M_contig893:5485..56611622932600.716018-CDS-F-serratus_M_contig893:5485..5661Fucus serratus maleCDSF-serratus_M_contig893 5486..5661 -
1690964380.50089-CDS-F-serratus_M_contig893:5485..56611690964380.50089-CDS-F-serratus_M_contig893:5485..5661Fucus serratus maleCDSF-serratus_M_contig893 5486..5661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig893.20295.1

>prot_F-serratus_M_contig893.20295.1 ID=prot_F-serratus_M_contig893.20295.1|Name=mRNA_F-serratus_M_contig893.20295.1|organism=Fucus serratus male|type=polypeptide|length=125bp
MACTSGKDMRTDDETSSLRASFDRFQELILRHAVERLPWTTGILSSKDIG
AIVDYVSTSYYRHFPLYKHIFTTRVTVIIEQHHPHGVEEPFVVAPLRGAL
VMSTHQPASDKHINLGDQESAKGN*
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mRNA from alignment at F-serratus_M_contig893:4138..5951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig893.20295.1 ID=mRNA_F-serratus_M_contig893.20295.1|Name=mRNA_F-serratus_M_contig893.20295.1|organism=Fucus serratus male|type=mRNA|length=1814bp|location=Sequence derived from alignment at F-serratus_M_contig893:4138..5951- (Fucus serratus male)
ACTACGCCTTTTGCAAGGAAAGACGCCTGGACGCTCGAGCGACTTCGACG
TTGTTGTCCATATTGAAGGAGGCGTTCGATGAGGTACGTGCACAGTTAAA
ACATATAAAAACTGTTTCAAACTTCGTTTACCCTTTCGGGCATCTTCTAA
CAAGCTGGCACGAATGTGCTCCAGTTCTGTGAACGAGTCAGGAAAGGAGC
CAGGTTTCCTAGTTATCCCTTTTTACTTTTTTTAACCAGTCTTCCTTGCC
CTGTCCTCTCGTGGCCAACCGGTGCCGGTGCGCTTGACCGATGGCGTGTA
CGTCCGGCAAGGATATGCGAACAGACGACGAAACATCGTCTTTGCGGGCT
TCGTTCGACCGCTTCCAGGAGCTGATCCTTCGGCATGCCGTAGAACGGCT
ACCGTGGACAACGGGCATTCTCAGCTCCAAGGATATCGGAGCCATCGTAG
ACTACGTGTCAACCAGGCGGGGGACATGGACCCACAAGCTTTAGAGTCCG
ACCGTACTTTGATCTCCCCAACCCTTGATCGTATGAATGCATTTTTTTCG
TCTTCGATTTTAACGCGATTGAGCTCCAGCCTAAGCCTCTCGTCTAGAAA
CTCGTGTGCCGAACAAAAAGGTATAGTGTTGCACTGAAAACCTTACCGTG
AGTGCGCCCGATCGCTTCTCTACTTGACATATTTCGGCAGTTACTATCGT
CATTTTCCCCTTTACAAGCACATCTTCACAACGAGGGTCACTGTGATCAT
CGAACAACACCACCCTCACGGCGTAGAAGAGCCGTTTGTCGTCGCTCCTT
TACGGGGAGCCTTGGTGATGGTGAGGTTAATGGCGACATGAGTCAATCGT
ACACGATGATACTCTTGCCCTAGTAACGCAGGCTTTCTCACACGACTGAG
GCAAATGCACACTTGTAAGGATACGCAAGCATATGAGACTTGGCATAGAG
ATCAAGTGGTTTGTCCCAAAACTGCGCGCCTTTGACAGATGGAACCCTTA
CGCGACGTTCCAATGGCAGGAAGGGGGGGTTGCTCGACCTTATGGACGAC
TGCACGAATAACCATAACGTTTCCATGGGATGCCTCGTCTCTAAAGCGTA
ACATCGTTTGGTGGGGTGTTACCTTTCTTATCGTCATTCCCTTCGCCAGA
GTACACATCAACCCGCCTCCGACAAGCACATCAACCTGGGTGACCAAGAA
AGTGCAAAGGGAAACTAAAACTTCATGTAAGCACAACGCTTGGCAGTTTC
GAGAAAGCGTTCCATGCCGCCCGTGTTGCATCGAAATTGTTTCCCGCGGC
TCTAGATCTATTTTTTCTCCCTTTGGCCCCTCAATGAAATTATCATGCCC
TCTAGGTTGTTCAAATTCAGTCCCTTACGACGATAGGCTTTTCGCAGTAC
ATTGTAACTCTGCCAGGCATCGAAGTTGCACCAACCGCACACACACGTTT
CCGCCTTCACGCCTCCCTCCCCCCTGTTCTCGACTTCCCTCACCAAGTTA
CCAAAATCAAGCGTTGCGCTTCCTCTTCAACGTGAGCATCGTGGGACTTA
GTTTAGGTATTGTCGACGAGGATGGACGATACGCATTTTGGACAGTAGTG
CGCGCGTACATACGGTAAATTGTTGATTTGCTCGACTGGAATCTACGTTG
TTGTTGGAAATCTTAATTTTGTACATGTCTGTCGTACGTTGTAGGCAGAT
TAGATACAGCGAGTACAGTGAAAGAGCCGAGCAAAAACAAGCACCTAAAA
TCATCACGATATGTTTTGGCGAATTCCTGGCCGCACTACCTCATTTTGAA
CTATAAAGTCGTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig893:4138..5951-

>mRNA_F-serratus_M_contig893.20295.1 ID=mRNA_F-serratus_M_contig893.20295.1|Name=mRNA_F-serratus_M_contig893.20295.1|organism=Fucus serratus male|type=CDS|length=750bp|location=Sequence derived from alignment at F-serratus_M_contig893:4138..5951- (Fucus serratus male)
ATGGCGTGTACGTCCGGCAAGGATATGCGAACAGACGACGAAACATCGTC
TTTGCGGGCTTCGTTCGACCGCTTCCAGGAGCTGATCCTTCGGCATGCCG
TAGAACGGCTACCGTGGACAACGGGCATTCTCAGCTCCAAGGATATCGGA
GCCATCGTAGACTACGTGTCAACCAGATGGCGTGTACGTCCGGCAAGGAT
ATGCGAACAGACGACGAAACATCGTCTTTGCGGGCTTCGTTCGACCGCTT
CCAGGAGCTGATCCTTCGGCATGCCGTAGAACGGCTACCGTGGACAACGG
GCATTCTCAGCTCCAAGGATATCGGAGCCATCGTAGACTACGTGTCAACC
AGTTACTATCGTCATTTTCCCCTTTACAAGCACATCTTCACAACGAGGGT
CACTGTGATCATCGAACAACACCACCCTCACGGCGTAGAAGAGCCGTTTG
TCGTCGCTCCTTTACGGGGAGCCTTGGTGATGTTACTATCGTCATTTTCC
CCTTTACAAGCACATCTTCACAACGAGGGTCACTGTGATCATCGAACAAC
ACCACCCTCACGGCGTAGAAGAGCCGTTTGTCGTCGCTCCTTTACGGGGA
GCCTTGGTGATGAGTACACATCAACCCGCCTCCGACAAGCACATCAACCT
GGGTGACCAAGAAAGTGCAAAGGGAAACTAAAGTACACATCAACCCGCCT
CCGACAAGCACATCAACCTGGGTGACCAAGAAAGTGCAAAGGGAAACTAA
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