mRNA_F-serratus_M_contig892.20292.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig892.20292.1
Unique NamemRNA_F-serratus_M_contig892.20292.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig892.20292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig892contigF-serratus_M_contig892:238795..246754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig892.20292.1prot_F-serratus_M_contig892.20292.1Fucus serratus malepolypeptideF-serratus_M_contig892 238795..246724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932599.7046523-CDS-F-serratus_M_contig892:238794..2390431622932599.7046523-CDS-F-serratus_M_contig892:238794..239043Fucus serratus maleCDSF-serratus_M_contig892 238795..239043 -
1690964380.1121733-CDS-F-serratus_M_contig892:238794..2390431690964380.1121733-CDS-F-serratus_M_contig892:238794..239043Fucus serratus maleCDSF-serratus_M_contig892 238795..239043 -
1622932599.723923-CDS-F-serratus_M_contig892:246676..2467241622932599.723923-CDS-F-serratus_M_contig892:246676..246724Fucus serratus maleCDSF-serratus_M_contig892 246677..246724 -
1690964380.125139-CDS-F-serratus_M_contig892:246676..2467241690964380.125139-CDS-F-serratus_M_contig892:246676..246724Fucus serratus maleCDSF-serratus_M_contig892 246677..246724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932599.7379959-UTR-F-serratus_M_contig892:246724..2467541622932599.7379959-UTR-F-serratus_M_contig892:246724..246754Fucus serratus maleUTRF-serratus_M_contig892 246725..246754 -
1690964380.138629-UTR-F-serratus_M_contig892:246724..2467541690964380.138629-UTR-F-serratus_M_contig892:246724..246754Fucus serratus maleUTRF-serratus_M_contig892 246725..246754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig892.20292.1

>prot_F-serratus_M_contig892.20292.1 ID=prot_F-serratus_M_contig892.20292.1|Name=mRNA_F-serratus_M_contig892.20292.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MELVLEDDGSPVDVMIVCIHPNLLVDGNATSITAQVASFFPATSSGGASS
SHGGFEYGGRGGLPRKKGISWSVRGACGPENSGTFEVSGLGGKAWEPFG
back to top

mRNA from alignment at F-serratus_M_contig892:238795..246754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig892.20292.1 ID=mRNA_F-serratus_M_contig892.20292.1|Name=mRNA_F-serratus_M_contig892.20292.1|organism=Fucus serratus male|type=mRNA|length=7960bp|location=Sequence derived from alignment at F-serratus_M_contig892:238795..246754- (Fucus serratus male)
TCTGAGAGCAGAGACTTCGGCATTGCTTCGATGGAACTCGTCCTGGAGGA
CGATGGAAGTCCAGTGGATGTCATGATCGTGAGTCAAGTTTATCAAGCGA
TCGTTTTCCCCACGTTTACTTTAGAAAATGGTGATGACAGCTGTGTATGG
CGTCATCCGGGGATCTACCGGTGTCGCAACGGCGCGGTTGCGGGTGTATT
GAAAAATCTGAACGCATCTACTTGTAGACCTGAGCATCCCACACAAGGGA
AAAAATGTCAAAACGCTAGATGGGATCATAGCCTGCAAAGACGAAACCTC
TTCATGGCATTTGAACACTGATTGCACCGCGGACATGTATGTCAAACACG
CACATCGTGCCAACAATAAACCAGCACATCCGTGCTTGTGCGCTAAAAAG
TGGGGCTGGTGGGACTCGCCCTTAGCCAGAGCCTTACACCTGGCTCTTCT
GTAGGTCGCGCGGTATATCATCGAATGGATGCAGAAGCAGGTCCTCCGGC
GATCGATCTGCCGGCAGTGTTTGCCGTAACTCTGTTAGCGTATCAGTTTT
GTATCGGCTGTGGAGCCGAAGTTAAATACACGACACATTACAGCAGTTTC
TTCTGTGTTTTGTTATTGTGTGTACAAAGCACAGACACATCGCCCATGCG
CTCTAGACTATAGATAGAGCAAGCAACGTAACGGAAGAGTGGATTCATTT
GTTGTGTAGTTGAATAGTATCTGCTGTAGCATACCAGTATGTCGTGTGTA
TGGTCACACATATAGCAAGAGTATGGATCAACCTGTTAAGGTTGCCAATC
CTGCTCGTGGTCAGCTAAACAGAGAAAATAATATTCCCCTGTCCGCGTTC
GCGCCTGGGAATTTGGTCTCGCGAGACGGTTTCGTCCCGTCCCGCGTCAG
CCTGCTCATCTCCATACTCAGGCTGAATCTGATTTTTACGCCATCGGGTA
AGTCCCAAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGA
AGCATACCTCAAGGTAGTTTCGAAAAGGTTATGAAGTGGGCATGTTGAAA
GTAACGGCGATGTCGCCAAAAAAGACAAAAGGCGCGCCATATGACGTTGT
GTACGGAGCACAGAGACATTACTCATGCGCTCTGTAGATCAAGCAACGAC
CTTGGTGATGTTGCTGGTGGTTGATACCATACAATACAGTATTGGCTGAG
GAGCCGAATGTAGATACACGACACAACATTACAGCAGTTTCTTCCGTGTT
TGGTGGTTGTGTACGAAGCACAGACACATCGCCCATGCGCTCTATATGAT
AGTCTGGATCAAGCAGCGACATTTATGATGTTACATTACTCCTGGTGTGT
GATACCACACAAACAAGTACATAGTTAGGAAAGGAAAAACATAGTTAGGA
AAGGAAAGGCAGGCTCATTACACGGTGTCGTTATTTTTGTCTACCAGCGC
ATAAGCGTCGACAAGAGCTATGGCTTGTGTTATAGTCTGCTGAGTGGTCT
GTTGTGTGTGGGGAAAGTGGTAACGCCAGCATTGGTACGGACGCTCCATA
TTTTCAAAAAATGTTGACAGTCCTTTGAGTACACGCGTTCGACATTCCCA
AAACCCTGACAAAAAAAATGGCCAGCGTAAGACATGCGGACCGAAAATCT
CCAGCGGAAAAAAACTCGAGTGGAAATAGGCAATTTCCGCTCGGAAAAAA
CGCCCGTAGGAAACGGTCTAAGACCGTTTCCTATGCGGGCGTTTTTTGGC
TATTTCCGCCCGGGAGCAAAAATTCATGTTTAGACCATCTTTTATGGGCC
TGGAAATTCAAAATTCTTGAAATCTGAAATCGAATAGATTTCGGATTTCG
GGCGAACGTCTGCATCCCAGAATAAAATTTTCTTATGGGACTCTGGAAAC
TGAAAATTAAACAAAGTCATGGAGGCGTACTCGATACAAAATGATAGGTT
GAAGAAATAGCTAGACGAGACGACTTCGGGCTACCCACTGAGGGGCATGT
GTTATAAGGACTGATTACCGATACGTAATCGTCAATTGACTTTTACCCCG
TGGTATAGTAGTTAAACTAATCACACTGGCGTCGACTGGGACCCGGGTTC
GAATCCCCCTTAGCTAGTTGCTTTTACCTACGCATGCCCCTCCACTCAAA
AACCTTATCGAATTTAACTAGTCCCGCTTGATCTCCGGATAGATCCCTTG
ATCGCCCGCTTGATCGCCGGATAGTCAAATTCTGTGGGTGGAGAGTGTTA
TAAGGACTGATTACCGATACGTAATCGTCAATTGACTTTTACCCTGTGGT
GTAATAGTTACTTTATCACACATGCGTAAGACATATGTTTGTGTTCACCT
CCATCATGCCTACGGCAGAGACAAGCGATGGTTTGTGCTTCTCTCTTCAT
GCTCTCTTCCACAAAGCCCAGAAAAAAAAGTATAGGTTGCTCTCCAATTT
AATTTCAGTACTACAGTTTGTTACGTAATACCGGTATGTGTTATACTTGC
ACAGCACCGAGTGCTTTACCGGGAAACGTGGCCTCGACGGAAACGGTATG
AGTAGCTGCTGTGTGAGTTGCAGCAACAGTTTGGTTGGTGAAGGGCCCAC
GTCAAGCCTACTAATCAATCTCACACCGCGGCCCGGCGCGCTTTTGTTTG
GTAAGGTGTGCATTCTCTTGAGTAGCTATTTAGAATTATGTCGGTCATGT
TTGTACCAACGTGCGAGGTCGCAAGAGTACAGACAGATGACTGCATCGTG
GCAGCGAGAGCGATTCCTGCTGCCACCGCCCCATCGTTTCCCTCAGTAAC
CTTCATCACCAAAGGCTTGAGTTTGGTTCATAACCGCTCGGGCTGCTATG
GGCTTAATCTCTGTGCAACGCGTCGGCGTGTAGCGACTGGTTGCTGCTTC
TCTCGTTCTGCTATCTTCAGCGCAGACTAAACACTACTGAAGTATAGTAC
TACGAACATATACTACAGTACAGTTAGTTTATCAAAGACTCTGGTACCGG
GAAACGTCGTCTCGACGGGGAAAATCTGTTGTGCGAGTAGCTGCTCTGTG
AGTCGCAGCAGCAGTTTAGTTGGACGAAGGCCTACGTGAAGCCTACTCAT
TGGATCTCTTCTTGCGGCCGGACGCGTCTTAGTATATCGTTAGGTGTGCA
TTTTCTTGAGGAGCACTGTTGAGAACTATGTGGGCCCTGTTTGTACGACG
TGCGAGGTCTCTGGAGTATAAACAAATAACCGCATCGTGGCAGCGACAGC
GACAGCGATACCTACTGCCAGTGCGCCAGAGTTTCCATCAACAATCTCCA
TCCCTGAAAGCTTGAGTTTGACTCAGAATCACTCGGGCTGCTGGCGCTAC
TCTCCGTGCTACGAGTCGGCGTGTCATCCGGTTATAGGTTTGCTGCACTA
CAACAAGTATCAAAAGCCACAAATACCTTGGGCATAGCCAAAAGCCTGAC
CATGTAACACAAAAACGATTTTCCAGAGAGCCGATCTCTCTGGAAAATGG
GTGCTCATTTTCAAGAATCTGTCGACCTCGCCCGATTCTTGAAAATCAGA
TTCTTGAGAATGGGCGTATTTCAAGTCCATAAGATGGGATTTTCTCTTGA
AATCCGAAAATGGACCGATTTTAGGTTTCAAGAATCCTGTATTTCGGTCC
CATAAGACTTGGCCTTACGCGGGCGGAAATAGGCAAAAAACGCCCGGCAA
AAACGCCCAGCGATTTCCGCCCAGAATCTGGGCGGTTTTTGGAGCAAAAA
ACGCCCGGATCTCTCGGCGGAAATCGCTGGGCGTTTTTTGTTGAGACTGA
TTGTTGTTGTTTAAAGAAAAATCCGAACAGCACCTAGACTTTTTTTTGTT
GTTGTTGTTGTCTTCACATTAAAAACCGTTCTGACCTCTATCCAGTACAG
CCCGCGTTAAATCACCAGCCCTGGTGCAAGTTAGAAATGTACCAGCTCTG
AAACGCCTCCAGAACTACACCAGAACTACACCTTACAGAACCGATTTGCC
TCCAAAACTACACCTTATTTCATAATTTATAAGAAATAAAAAGCAAAGGC
TTTCAGTCACAGCGTAGTAGGCTAGGTGGTAAGATTATAGACATCGAACA
AGTCTCGAGGTTCAATTCCCTCTATCGAACCATTTTTTTATCTTACTTGA
ACCAAGCGCCAGCCATGAATTGGGACCTCGCAGTCAGCTGGGCTAGCGGG
GTCTGGGTTAGGGTTAGCGATAGCGTTAGGATTTTTTATTTTTCGCAGAC
GGGGCATGAATTGACAATCCCCAAGGGTTATGTGTAGATCTGGAGGCTTT
CTCTCGCTGGTACATTTTAGAAATGCACCAGGGCTGGTGATTTAACGCGG
GCTGCTATCCAGTACCTTCTCTTTCTTACTCTTCAAGGCAAAGAAACGAA
TTTCCGTGGTCACACGCTAACCCAAACTAAGGTACAGAAAACTAATAAAT
AAAATAAAATAAAAAGACCCAGAGAAGGTTCCAATATTAGCCAAAAAAAT
AATAATAATAATAATAATAATAATAATAATAACAAGTTCAGAACACCGCA
CAAACCACACCAAAATACAGTATGTATGTATGTATGGTCATCACATATAG
CAAGAGTATGAATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGC
TGAACAGGGAAAATGAATACTTCTCTGTCCCCGTTCGCGCCTGAGAATTT
CGTCTCGCGAGGCGGGTTCGACAGTCCCGTCCCGCGTCGATATAGAACTG
GCTGTTGATCCAAACGAAGGTAGATGAATGACACAAAAAATACAGCAGTT
TCTGGGTTTGGCTGTTGTTGTGTACGGAGCACAGACACATCGCCCACGCG
CTCTACAGATGAAGCAGCGACGTTTCTGATGTTGTAGCACTGGTGTTTGA
TACCCCACACAATATTATAGTATTGGCTATTGATCCAAACGAAGGTAGAT
GAATGACACATAATTACAGCAGTTTCTGGGTTAGCGACATGCGGACCGAA
AATCTCGAGCGGAAAAAAGCTCGGGCGGAAATAGGCAAAAAACGCCCGCA
CAAGAAACGGCCTAATTAGATAGGATAGTAATAATTCCGCGCAAATCTTT
TGTAAGTTAGAAACGCTAAACCACTAGATTACTGAGTCATGACTCAGTAG
TCTCTACTCACTAATCGATTCTAACTTACACATCGCACAATAGGGGCGAA
TAGTCTATCGATATTAATAGAACAAAAGGAATCGTATGCTATTATTGTAG
CTGATGAGGATTGGTACATTTTGTTAGGTACTGGTATGGGACACCTACAG
GTAGTGGTAGTAGTAAACACGTAAGGTTTGGGTTAAAGATTAAAACAGCA
TAGTAATAGGGCAGAGAGGACCACCATCGTAGATATCTTGGACATAATCC
AGCAAGTACGACACCTGAAAGACTTATTAATAGTACGATAGGCTATTATA
GTATACAAAGAAGCGAAGAGCAGTAGAGGGCCACGACACTATTAGTAATA
GAGAAATGAGAGGCAGGTGGGCGGAGAACGCACGCATACCTGTCATAAAG
CTACCACTCGCCTGCTCCATAACACCAACTCTAAGTCAGCTATATTTCTT
CAAAAAATTACAGTAATTCTCTAAAGATGTACCGTACCTGTTACGACTCC
TCCCACAGGCAGTGCTTGATATTTTTTCCAACGTTGCAGAGCCACAACAA
ACAAGTAGATCATGTACATTTCTACACAGCAGTTGTTCGTGCCCTGATAT
GAAGCGATAATATATACTAACCTTAACATACTTCGAAAGACGTGAAGTTC
TCACCCAGTATTTCTACAGTCGAGTCCCTTGCAATCTAGTGATATAATCA
GTGTACTGTTCTGTAGTATGTATGTATACATGTATGTTTGTATGGTCATC
ACATATAACAGAGTATGGATCAACCGGGTGAGGTTGCCGTTGCCAATCCT
GCTCATGGTCAGCTTTTTATTTTTATTTTTTCATCTCACTTATATCGGAT
GGGCCTCATTCCATCCTGCCTGTGGTCACTAATGATCTTCCCATCTCTCC
CCGGGTCACACCTTAAGATTTTTTATCGTGATGCAAGTTCAACACTCTTA
CAACTCGTTAACCAATGGTTGAATTTTACTTACTCACGTTCTCACGCTTT
CTGCTACAGAAGAAAGAACACAAATTCTGGTGACACGAATCGAACTCACG
ACTTCCGCACTAGCAGGTGTGCAGGTCACATCTACTAGACCACTCGGGCG
ACGAGATGAACAGAGGAAAATTATATTTCCCTCTCCCCGTTCGCGCCTGA
GAATTTGATCTCGCGAGACGGGTTCGGCAGTCTCGTCCCGCGTCAGCCTG
CTCATCTCCATACTCAGGCTGAATCTGGCGCTTACTTGCGGGATTCCTCC
CGATTTCCGCGGCGGCGTCCATTTATTTGTTCAGACCACCATACGCCATC
GGGTCAGTCCCGAGTTGATCGGGTCACGCGATTGCGTACCGATGGCGTTC
ACTACCGAGAGTCCGCCGGCACAGGGCCAGAAAACCTCAAGGTAGTTCCA
GACGGGTGCTGCCTTGGCATGTCACCATGGACCAATTAATATGCGTCTCT
TTTCCCCACACCCGCTATAGGTATGAAGTGGTTATAGCATGTTGAAAGTA
CCGGCGGTTACTACTCTACATCTCCCATTTATTCAGGCCTGTCGAAACCC
TCATGTTTTGTGAGGTTCTCGTGTCCGCAGTTCTCAATACAAAACTATTA
ATTCAGTACAGTACTCTAGTATTTAGCACGTCGTACGGAGGCATGGCGAA
TGCTGCTGGCCCCCCATACTTTTCTGTATCACAATGTCCAAAAAGAGGCG
CACATCAACTGGTCATAGTCCATGGTGACACCTGGAAAGGCAGCACCCGT
CACTGGAACTACCTTGAGGACTACTGGCACTGTGCCGGCGGGCTCTCGGT
AGTGAACGGCATCGGTACGCAATTGCTTGACCCGATACACTCGGGACTAT
CTTGATGGCGTATGGAAATTTTACGTACATAAATGGACGCCGCCGGGGAA
TTTGGGAGGAATCTCATAAGTAAGCACCAGATTCAGCCTGATTATGGTGA
TGAGCAGGCTGACGCGGGACGGAACTGCCGAACCCGTCCCGCGAGACCAA
ATTCTCAGGCGCGAACGGGGATAGGGAAATATATGTTTTCTCTGTTCAGC
TGACCACGAGCAGGATTGGCAACCTTATCCGGATGATCCATACTCTTGCT
ATATGTGTGACCATACATAAATAGCACATCCCGGGGATGGCATGTTCGTA
TCCCCCCCCCCCCTTCCAAAGTTGAAGATAAAGATAAAGACTAAAGACCA
ACACAGACGTCAAAGTGACGGACACATGTTCCGATCCGCAGCGTCTGTCT
CGGACTGACACTCTGTCTGCCCCGCTCGCTGGTGATGCTCTAATGGACAC
CTCGATTTCCCTGTCCCTCCAGACCAACGACACTATACTATACTACCATA
TACTATGCCATGCACTACATACTTTACAGTGCCTGGTATTACATTACACT
AAACTACACTATACTATACCATTCACTACATACTTTACAGTACCTGGTAT
CACATTACACTACGCTACACTATACTACAACATGCACTACATACTCTACG
GTACCTGGTACTATACTACGAGTCGTATGCTTGTGTGCGCCCCTGCCCCG
CCAACGTTCAGGTGTGCATCCACCCCAACCTCCTCGTTGATGGCAACGCT
ACATCCATAACAGCTCAGGTGGCCAGCTTCTTTCCGGCGACATCATCGGG
CGGTGCAAGCAGTAGTCACGGTGGGTTTGAATACGGTGGGCGTGGCGGTT
TACCACGGAAGAAGGGAATTTCCTGGAGTGTTCGGGGTGCCTGCGGACCA
GAAAACTCTGGGACGTTCGAGGTCAGCGGGCTGGGAGGAAAAGCTTGGGA
ACCTTTTGGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig892:238795..246754-

>mRNA_F-serratus_M_contig892.20292.1 ID=mRNA_F-serratus_M_contig892.20292.1|Name=mRNA_F-serratus_M_contig892.20292.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig892:238795..246754- (Fucus serratus male)
ATGGAACTCGTCCTGGAGGACGATGGAAGTCCAGTGGATGTCATGATCAT
GGAACTCGTCCTGGAGGACGATGGAAGTCCAGTGGATGTCATGATCGTGT
GCATCCACCCCAACCTCCTCGTTGATGGCAACGCTACATCCATAACAGCT
CAGGTGGCCAGCTTCTTTCCGGCGACATCATCGGGCGGTGCAAGCAGTAG
TCACGGTGGGTTTGAATACGGTGGGCGTGGCGGTTTACCACGGAAGAAGG
GAATTTCCTGGAGTGTTCGGGGTGCCTGCGGACCAGAAAACTCTGGGACG
TTCGAGGTCAGCGGGCTGGGAGGAAAAGCTTGGGAACCTTTTGGTGTGTG
CATCCACCCCAACCTCCTCGTTGATGGCAACGCTACATCCATAACAGCTC
AGGTGGCCAGCTTCTTTCCGGCGACATCATCGGGCGGTGCAAGCAGTAGT
CACGGTGGGTTTGAATACGGTGGGCGTGGCGGTTTACCACGGAAGAAGGG
AATTTCCTGGAGTGTTCGGGGTGCCTGCGGACCAGAAAACTCTGGGACGT
TCGAGGTCAGCGGGCTGGGAGGAAAAGCTTGGGAACCTTTTGGT
back to top