mRNA_F-serratus_M_contig891.20285.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig891.20285.1
Unique NamemRNA_F-serratus_M_contig891.20285.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig891.20285.1 vs. uniprot
Match: D7FSH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.320e-12
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  385 AGSGAGPIVDDVPAPAKQAQDIRWLVAQAKAKP-AEGDVWAVLDRQWWLRWQRFTGCDGHKSVPG 576
            AG+G G  + + P P  QAQ IRWLVAQ K K   EG++WAVLD++WW RWQ +TGCD H    G
Sbjct:  444 AGAGVGFEIGEAPPPEAQAQLIRWLVAQEKEKKDCEGNIWAVLDKKWWQRWQLYTGCDEHAHAVG 508
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BLAST of mRNA_F-serratus_M_contig891.20285.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.130e-12
Identity = 53/150 (35.33%), Postives = 70/150 (46.67%), Query Frame = 1 
Query:  151 PPVGARDVARCCGDGIGGMKAAGTTVVD--------GDRDPARREEGVDLVEKGKGAERGEEVAQDCGNNDCCDGGGNGGDGRRDSAGSGAGPIVDDVPAPAKQAQDIRWLVAQAKAKPAEGDVWAVLDRQWWLRWQRFTGCDGHKSVPG 576
            P +G   V RC G  +GG +     V          GD D     +G D   KG G+++  E AQ               +     A +G G  + + P P  QAQ IRWLVAQ + K  EG++WAVLD++WW RWQ +TGC  H    G
Sbjct:  313 PALGGPAVRRCYGP-VGGSEVDAADVASTFEAGDAAGDGDARIGTQGEDAY-KGDGSDKQGEDAQT--------------EAAAPEASAGVGFEIGEAPPPEAQAQLIRWLVAQEEEKDCEGNIWAVLDKRWWQRWQLYTGCYEHAHAAG 446
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig891.20285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSH2_ECTSI1.320e-1255.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L229_9PHAE6.130e-1235.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig891contigF-serratus_M_contig891:224271..225282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1e-11
Seed eggNOG ortholog2880.D7FSH2
KEGG koko:K11835,ko:K11837,ko:K11847
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932598.612645-CDS-F-serratus_M_contig891:224270..2245101622932598.612645-CDS-F-serratus_M_contig891:224270..224510Fucus serratus maleCDSF-serratus_M_contig891 224271..224510 -
1690964379.5730798-CDS-F-serratus_M_contig891:224270..2245101690964379.5730798-CDS-F-serratus_M_contig891:224270..224510Fucus serratus maleCDSF-serratus_M_contig891 224271..224510 -
1622932598.626503-CDS-F-serratus_M_contig891:224802..2252821622932598.626503-CDS-F-serratus_M_contig891:224802..225282Fucus serratus maleCDSF-serratus_M_contig891 224803..225282 -
1690964379.5945494-CDS-F-serratus_M_contig891:224802..2252821690964379.5945494-CDS-F-serratus_M_contig891:224802..225282Fucus serratus maleCDSF-serratus_M_contig891 224803..225282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig891.20285.1prot_F-serratus_M_contig891.20285.1Fucus serratus malepolypeptideF-serratus_M_contig891 224271..225282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig891.20285.1

>prot_F-serratus_M_contig891.20285.1 ID=prot_F-serratus_M_contig891.20285.1|Name=mRNA_F-serratus_M_contig891.20285.1|organism=Fucus serratus male|type=polypeptide|length=240bp
QDVGNTCPPTPPQPPPPPHPLLQHAAVKRCFSAFVAEADAAGAVGGETDD
PPVGARDVARCCGDGIGGMKAAGTTVVDGDRDPARREEGVDLVEKGKGAE
RGEEVAQDCGNNDCCDGGGNGGDGRRDSAGSGAGPIVDDVPAPAKQAQDI
RWLVAQAKAKPAEGDVWAVLDRQWWLRWQRFTGCDGHKSVPGRGDGVEGG
DANGDGTCDVASNGGINARVEGDADGGASADVDDEVNGGA
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mRNA from alignment at F-serratus_M_contig891:224271..225282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig891.20285.1 ID=mRNA_F-serratus_M_contig891.20285.1|Name=mRNA_F-serratus_M_contig891.20285.1|organism=Fucus serratus male|type=mRNA|length=1012bp|location=Sequence derived from alignment at F-serratus_M_contig891:224271..225282- (Fucus serratus male)
CAAGACGTTGGTAATACCTGTCCCCCCACCCCGCCTCAGCCCCCGCCCCC
GCCTCACCCTCTCCTGCAGCATGCCGCCGTGAAACGTTGTTTCTCTGCGT
TTGTTGCGGAAGCGGACGCCGCCGGAGCGGTAGGCGGGGAGACCGACGAC
CCACCGGTCGGGGCCCGGGATGTCGCGAGATGTTGCGGTGATGGTATTGG
TGGCATGAAGGCGGCTGGGACCACGGTCGTCGATGGCGACAGGGATCCCG
CTCGGCGCGAGGAGGGCGTGGATCTGGTTGAGAAGGGTAAAGGTGCCGAA
AGGGGAGAAGAAGTGGCGCAAGACTGCGGTAACAACGACTGCTGTGATGG
TGGTGGGAATGGTGGCGACGGAAGGAGAGACTCGGCGGGGTCTGGGGCCG
GTCCGATCGTCGACGACGTTCCCGCCCCGGCCAAGCAGGCGCAGGACATC
CGCTGGCTGGTGGCGCAGGCGAAAGCCAAGGTTAGTTTGTGCGTTCGCGC
GTCTCCGTTCCCTTCTTACCTCGCCTTTTTACTAGACACCAACTGGAATG
GGGCATCGGCTGTTACCGCAACAACCTAGTATCAATACCAATATCAAGCG
TGTTGATTCTGCGCGAGGCTTGTACAACAGCAAGCACGACACGCCGCCTA
GACCATCCCATTTGTACTCCCATTCGTAGTCTTATCTGGTACGCCATCAA
GAAGGTTCTGCCCCCCCCCTTCCGCTTCTCTTTCCTTCACTTGCGTTGCG
TTGCGGACGGAAAAAACAAAAGCCTGCCGAGGGAGACGTTTGGGCCGTCC
TTGATCGGCAGTGGTGGCTCCGGTGGCAGCGCTTCACCGGGTGCGACGGC
CACAAGAGCGTTCCAGGACGTGGTGATGGTGTTGAAGGCGGAGATGCCAA
CGGCGATGGAACTTGTGACGTGGCGAGCAATGGCGGTATCAATGCCCGTG
TTGAGGGCGATGCCGATGGTGGTGCTAGTGCCGATGTTGACGACGAGGTC
AATGGTGGTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig891:224271..225282-

>mRNA_F-serratus_M_contig891.20285.1 ID=mRNA_F-serratus_M_contig891.20285.1|Name=mRNA_F-serratus_M_contig891.20285.1|organism=Fucus serratus male|type=CDS|length=1440bp|location=Sequence derived from alignment at F-serratus_M_contig891:224271..225282- (Fucus serratus male)
CAAGACGTTGGTAATACCTGTCCCCCCACCCCGCCTCAGCCCCCGCCCCC
GCCTCACCCTCTCCTGCAGCATGCCGCCGTGAAACGTTGTTTCTCTGCGT
TTGTTGCGGAAGCGGACGCCGCCGGAGCGGTAGGCGGGGAGACCGACGAC
CCACCGGTCGGGGCCCGGGATGTCGCGAGATGTTGCGGTGATGGTATTGG
TGGCATGAAGGCGGCTGGGACCACGGTCGTCGATGGCGACAGGGATCCCG
CTCGGCGCGAGGAGGGCGTGGATCTGGTTGAGAAGGGTAAAGGTGCCGAA
AGGGGAGAAGAAGTGGCGCAAGACTGCGGTAACAACGACTGCTGTGATGG
TGGTGGGAATGGTGGCGACGGAAGGAGAGACTCGGCGGGGTCTGGGGCCG
GTCCGATCGTCGACGACGTTCCCGCCCCGGCCAAGCAGGCGCAGGACATC
CGCTGGCTGGTGGCGCAGGCGAAAGCCAAGCAAGACGTTGGTAATACCTG
TCCCCCCACCCCGCCTCAGCCCCCGCCCCCGCCTCACCCTCTCCTGCAGC
ATGCCGCCGTGAAACGTTGTTTCTCTGCGTTTGTTGCGGAAGCGGACGCC
GCCGGAGCGGTAGGCGGGGAGACCGACGACCCACCGGTCGGGGCCCGGGA
TGTCGCGAGATGTTGCGGTGATGGTATTGGTGGCATGAAGGCGGCTGGGA
CCACGGTCGTCGATGGCGACAGGGATCCCGCTCGGCGCGAGGAGGGCGTG
GATCTGGTTGAGAAGGGTAAAGGTGCCGAAAGGGGAGAAGAAGTGGCGCA
AGACTGCGGTAACAACGACTGCTGTGATGGTGGTGGGAATGGTGGCGACG
GAAGGAGAGACTCGGCGGGGTCTGGGGCCGGTCCGATCGTCGACGACGTT
CCCGCCCCGGCCAAGCAGGCGCAGGACATCCGCTGGCTGGTGGCGCAGGC
GAAAGCCAAGCCTGCCGAGGGAGACGTTTGGGCCGTCCTTGATCGGCAGT
GGTGGCTCCGGTGGCAGCGCTTCACCGGGTGCGACGGCCACAAGAGCGTT
CCAGGACGTGGTGATGGTGTTGAAGGCGGAGATGCCAACGGCGATGGAAC
TTGTGACGTGGCGAGCAATGGCGGTATCAATGCCCGTGTTGAGGGCGATG
CCGATGGTGGTGCTAGTGCCGATGTTGACGACGAGGTCAATGGTGGTGCC
CCTGCCGAGGGAGACGTTTGGGCCGTCCTTGATCGGCAGTGGTGGCTCCG
GTGGCAGCGCTTCACCGGGTGCGACGGCCACAAGAGCGTTCCAGGACGTG
GTGATGGTGTTGAAGGCGGAGATGCCAACGGCGATGGAACTTGTGACGTG
GCGAGCAATGGCGGTATCAATGCCCGTGTTGAGGGCGATGCCGATGGTGG
TGCTAGTGCCGATGTTGACGACGAGGTCAATGGTGGTGCC
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