mRNA_F-serratus_M_contig891.20280.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig891.20280.1
Unique NamemRNA_F-serratus_M_contig891.20280.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 3.320e-116
Identity = 169/220 (76.82%), Postives = 197/220 (89.55%), Query Frame = 2 
Query:  179 PKFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDT---PPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEALL 829
            PKFNVK+ SDNVCPWC+VGKRNLESAMKQF  +QP +    PP+F+V WKPFFLNV+SPETS+ PI+EYLE+KYG+ AGSRMA ALERAG+STGI FNN+RRVHNTI SHRLVRLAD Q KGGDMIE LF GYFEEG+NIAD DVLLE+AQKAGV CTKE+L+G EG++EVL EY++GVQ+QG++GVPYY++SREGSK+T+PLSG QPPEAFVEAFEALL
Sbjct:    2 PKFNVKVISDNVCPWCYVGKRNLESAMKQFATSQPTEKEQEPPVFDVRWKPFFLNVKSPETSEEPIQEYLEKKYGKGAGSRMAVALERAGKSTGINFNNDRRVHNTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEALL 221
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BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 3.010e-110
Identity = 156/216 (72.22%), Postives = 193/216 (89.35%), Query Frame = 2 
Query:  182 KFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPN-DTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEAL 826
            KFN+KIFSDNVCPWCFVGKRNLE+AMKQF A +P+  +PP+F+V WKPFFLN+E+PETS++PI EYLE+KYG+ AGSRMA +L  AG++TGI+FNN+R+VHNTI SHRLVR ADGQGKGG+MI+ LF  YFE+GRNIADVDVLLELA+KAGV CTK++L+G EG+ EV+ EY+ G+ + GI+GVPY+++SREGSK+T+PLSGGQPP AFVEAFEAL
Sbjct:    3 KFNIKIFSDNVCPWCFVGKRNLETAMKQFAAREPSTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLAMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEAL 218
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BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.140e-55
Identity = 102/225 (45.33%), Postives = 144/225 (64.00%), Query Frame = 2 
Query:  155 MQAFAMAAPKFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSC-TKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEAL 826
            M+A ++  P       S  VCPWCF+GKR LE+A+++     P D       +WKPFFL+  SP+ S +PI  +L +KYG  AG+RMA +L  AG+  GIKF  +R V NTI+SHRLV LA  QGK   +IE LF GYFE+G  ++ VD L+ +A+ AG+S   + +L+  E +  V++E     +  GITGVP++V++R+G+K  L LSG QP + F EAF+AL
Sbjct:    1 MRAVSIYPPAAAPYALSPPVCPWCFIGKRRLEAAIRE-RGLGPKDV----QTTWKPFFLDANSPKDSGIPIGVHLRQKYGAQAGARMAASLAAAGEENGIKFKEDRTVQNTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220
[Close]
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: B3SBG0_TRIAD (DSBA domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SBG0_TRIAD)

HSP 1 Score: 154 bits (390), Expect = 3.120e-39
Identity = 90/223 (40.36%), Postives = 134/223 (60.09%), Query Frame = 2 
Query:  179 PKFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAG--SRMATA-LERAGQSTGIKFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSC--TKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSK--STLPLSGGQPPEAFVEAFEAL 826
            P   + I SD +CPWCFVGKR+LE+AMK FE+T        F++ WKPF LN  +PE   +P+ EYL ++YGQ     +R  T+ L  AG+  G+ F++ R+  N+I SH L+  A  + K   + E LFQ YF +G NI DV VLL+ A++ G+     K+ LQ  E ++++++E +   Q+Q I GVP++V+S  G +    +PL G QP E F   F ++
Sbjct:    6 PTIKIDITSDTMCPWCFVGKRHLETAMKDFESTFE------FDIEWKPFLLNSNTPEEG-IPVLEYLAQRYGQQVADDARNGTSSLIAAGRKVGLNFDSNRKFVNSIRSHCLLDYARTEKKQNQLAELLFQRYFIDGNNINDVKVLLDCAKEIGLKAEEAKKSLQDKERRKKIIEEAKVATQNQ-IHGVPHFVISLIGDQHGKAMPLHGCQPIEMFRRVFTSI 220
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BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG)

HSP 1 Score: 147 bits (370), Expect = 2.530e-36
Identity = 92/235 (39.15%), Postives = 130/235 (55.32%), Query Frame = 2 
Query:  167 AMAAPKFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAG--------QSTG----IKFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGV--SCTKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEALL 829
            A+ +    + I SD +CPWCFVGKR LE+A+ Q     P      F   W P+ L+   P+ S      Y+ +K+G+    +M   +E  G        QSTG    I FN   RV NT  SHRLV  A  QGK  +M+E LF+ YFE+ R++ADV+ L E+A+K G+  + T  FLQ  EG+ EV  E  R +  + I+GVP++++ +  +     LSG QPPE FVE F+ +L
Sbjct:   14 AIPSKVVTIDIVSDTICPWCFVGKRRLETAIAQAIKAHPGTK---FETVWHPYELDPTLPKESVDKHANYV-KKFGEERMKQMLPYMENIGRLLIASSPQSTGKAENISFNFGGRVGNTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNM-GKSISGVPHFMIDKRYT-----LSGAQPPETFVELFDEIL 238
[Close]
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A8B8QL40_9MYRT (uncharacterized protein LOC115753440 isoform X1 n=3 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QL40_9MYRT)

HSP 1 Score: 144 bits (364), Expect = 2.770e-35
Identity = 91/215 (42.33%), Postives = 124/215 (57.67%), Query Frame = 2 
Query:  191 VKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQG--KGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLQGSE-GKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEAL 826
            + I SD VCPWC +GK+NL+ A+    AT  N     F + W PFFLN  +P+   V  KEY  +K+G H+ S M   +    +  G+++N      NT+ SHRLV  A  QG  K   ++E LF GYF +GR I D + L+E A KA V    EFL   + G +EV +E E+   S  I+GVPYYV++ +       LSGGQPPEAF++AFE +
Sbjct:   52 IDISSDTVCPWCCIGKKNLDKAI----ATAKNRFD--FEIKWHPFFLNPSAPKEG-VNKKEYYLKKFGSHSES-MEARMRELFRGIGLEYNMSGLTGNTVDSHRLVYYAGTQGLEKQHKLVEELFIGYFTQGRYIGDREFLVEAAAKAEVDGATEFLDNPKNGLQEVNEELEQ--YSSNISGVPYYVINGK-----YRLSGGQPPEAFLQAFEVV 251
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BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A2I0X9A3_9ASPA (DSBA domain-containing protein n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0X9A3_9ASPA)

HSP 1 Score: 142 bits (357), Expect = 8.280e-35
Identity = 86/230 (37.39%), Postives = 126/230 (54.78%), Query Frame = 2 
Query:  149 LPMQAFAMAAPKF-NVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQG--KGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLQG-SEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEAL 826
            +  +A    + KF  + + SD VCPWCFVGK+NLE AM      Q N     F V W PFFLN  +P+   +   E+ + K+G      + + +    +  G +++      NT+ SHRL+  A  QG  K   ++E LFQ YF +G+ I D  VLL+ AQK G+    E +   ++G +EV +E E+   S  I+GVPY+V +      +  LSGGQPPEAF+ AF+A+
Sbjct:    1 MDQKAVDSTSKKFIQIDVSSDTVCPWCFVGKKNLEKAMS-LAKDQFN-----FEVKWHPFFLNPNAPKEG-ILKSEFYKNKFGSTQYEHIISRMREVFRGLGFEYDTAGMTGNTLDSHRLISFAANQGYEKQNALVEELFQNYFIQGKFIGDKQVLLDAAQKVGIEGAAELINDPNKGLKEVNEELEK--YSSRISGVPYFVFN-----GSFQLSGGQPPEAFLHAFQAV 216
[Close]
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: UPI000564DB9A (DsbA family oxidoreductase n=1 Tax=Salinicoccus luteus TaxID=367840 RepID=UPI000564DB9A)

HSP 1 Score: 141 bits (355), Expect = 2.220e-34
Identity = 78/215 (36.28%), Postives = 129/215 (60.00%), Query Frame = 2 
Query:  191 VKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQ--HAGSRMATALERAGQSTGIKFNNERRV-HNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCT--KEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFE 820
            ++I+SD  CP+C++GKRN E+ +++FE+          NV  K F L+  +    D  + E L +KYG+      +M   + RA ++ G++FN +  V  NT+ +HRL+++A+ +GK G+ ++HL+  YF EGRN+A  +V+LE+AQ  G+  T  +E L  ++ K  V+ E     +  G  GVP++V++R+       +SG QPPEAF+EA E
Sbjct:    3 IEIWSDIGCPFCYIGKRNFEAGLERFESKDE------VNVVHKSFRLDPAASTEPDQSMAELLAKKYGKSLEEARQMNRQVSRAAEAAGLEFNMDAVVPSNTMDAHRLIKMAEAEGKDGEALDHLYHAYFTEGRNVARAEVILEIAQTIGMDTTAVEEMLGSNDYKETVISEQNEATRL-GAQGVPFFVINRKYG-----VSGAQPPEAFLEAIE 205
[Close]
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A6P6B4I4_DURZI (uncharacterized protein LOC111314597 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6B4I4_DURZI)

HSP 1 Score: 141 bits (355), Expect = 2.770e-34
Identity = 87/215 (40.47%), Postives = 128/215 (59.53%), Query Frame = 2 
Query:  191 VKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQG--KGGDMIEHLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLQG-SEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAFEAL 826
            + + SD+VCPWCFVGKRNL+ A+   E+    D    F + W PFFL+  +P+   V  +E+ ERK+G  A   +A   E   ++ G++++      NT+ SHRL+  A  QG  K  +++E LF GYF +G+ I D + LLE A+K GV    EFL+  + G +EV +E E+   S  I+GVP Y ++ +       LSGGQPPEAF+ AF+A+
Sbjct:   38 IDVSSDSVCPWCFVGKRNLDKAIA--ESRDQFD----FEIKWHPFFLDPSAPKEG-VNKREFYERKFGSQAQGIVARMKE-IFRNFGLEYDMSGLTGNTLESHRLIYFAGKQGLDKQHNLVEELFIGYFTQGKYIGDREFLLESARKVGVEGAAEFLENPNNGVKEVNEELEK--YSANISGVPNYTINGKHQ-----LSGGQPPEAFLRAFQAV 237
[Close]
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Match: A0A0G4L6G5_9PEZI (DSBA domain-containing protein n=5 Tax=Verticillium TaxID=1036719 RepID=A0A0G4L6G5_9PEZI)

HSP 1 Score: 140 bits (353), Expect = 2.900e-34
Identity = 77/215 (35.81%), Postives = 123/215 (57.21%), Query Frame = 2 
Query:  185 FNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIFNVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGIKFNNERRVHNTIISHRLVRLADGQGKGGD--MIEHLFQGYFEEGRNIADVDVLLELAQKAGVSC--TKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSREGSKSTLPLSGGQPPEAFVEAF 817
            FN+KI SDNVCPWC+VGKR L+ A+  ++ T P      F V+W PF+L+  SP+   VP++E + +++G      M+  L + G   GI+F+ + R+ NT  SHR+V LA  +G      ++  + + YFEE  +I   D+L++ A K G+     + +L+   G  +V +E +    + G++GVP++V+  +       L G Q  EAFVEAF
Sbjct:    4 FNIKIISDNVCPWCYVGKRRLDKAIALYQKTVPAGKDDTFTVTWSPFYLDPTSPKQG-VPLRERMAQRFGPGRFDAMSARLAQIGAGEGIRFSFDSRIGNTRDSHRVVALAQAKGPETQNRVVAEIMRSYFEEDGDITSKDMLVQAAVKGGLEAGEVRAWLESDGGGAQVDREVQEAY-ALGVSGVPHFVVDGQ------QLGGAQDVEAFVEAF 210
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig891.20280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN0_9PHAE3.320e-11676.82DSBA oxidoreductase n=1 Tax=Laminaria digitata Tax... [more]
A0A6H5KYU3_9PHAE3.010e-11072.22DSBA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YGU7_9STRA4.140e-5545.33Protein disulfide isomerase n=1 Tax=Tribonema minu... [more]
B3SBG0_TRIAD3.120e-3940.36DSBA domain-containing protein n=2 Tax=Trichoplax ... [more]
A0A433CYQ7_9FUNG2.530e-3639.15DSBA domain-containing protein n=3 Tax=Jimgerdeman... [more]
A0A8B8QL40_9MYRT2.770e-3542.33uncharacterized protein LOC115753440 isoform X1 n=... [more]
A0A2I0X9A3_9ASPA8.280e-3537.39DSBA domain-containing protein n=2 Tax=Epidendroid... [more]
UPI000564DB9A2.220e-3436.28DsbA family oxidoreductase n=1 Tax=Salinicoccus lu... [more]
A0A6P6B4I4_DURZI2.770e-3440.47uncharacterized protein LOC111314597 isoform X1 n=... [more]
A0A0G4L6G5_9PEZI2.900e-3435.81DSBA domain-containing protein n=5 Tax=Verticilliu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig891contigF-serratus_M_contig891:180023..188767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue1e-90
Seed eggNOG ortholog2880.D8LHI5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DSBA-like thioredoxin domain
EggNOG OGs2QTH7@2759,COG2761@1
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-11_003940.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2248
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig891.20280.1prot_F-serratus_M_contig891.20280.1Fucus serratus malepolypeptideF-serratus_M_contig891 181439..188613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932597.405928-UTR-F-serratus_M_contig891:180022..1814381622932597.405928-UTR-F-serratus_M_contig891:180022..181438Fucus serratus maleUTRF-serratus_M_contig891 180023..181438 -
1690964379.0015578-UTR-F-serratus_M_contig891:180022..1814381690964379.0015578-UTR-F-serratus_M_contig891:180022..181438Fucus serratus maleUTRF-serratus_M_contig891 180023..181438 -
1622932597.5613525-UTR-F-serratus_M_contig891:188613..1887671622932597.5613525-UTR-F-serratus_M_contig891:188613..188767Fucus serratus maleUTRF-serratus_M_contig891 188614..188767 -
1690964379.0546086-UTR-F-serratus_M_contig891:188613..1887671690964379.0546086-UTR-F-serratus_M_contig891:188613..188767Fucus serratus maleUTRF-serratus_M_contig891 188614..188767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932597.4182823-CDS-F-serratus_M_contig891:181438..1816451622932597.4182823-CDS-F-serratus_M_contig891:181438..181645Fucus serratus maleCDSF-serratus_M_contig891 181439..181645 -
1690964379.0145214-CDS-F-serratus_M_contig891:181438..1816451690964379.0145214-CDS-F-serratus_M_contig891:181438..181645Fucus serratus maleCDSF-serratus_M_contig891 181439..181645 -
1622932597.4714403-CDS-F-serratus_M_contig891:182033..1822881622932597.4714403-CDS-F-serratus_M_contig891:182033..182288Fucus serratus maleCDSF-serratus_M_contig891 182034..182288 -
1690964379.0250058-CDS-F-serratus_M_contig891:182033..1822881690964379.0250058-CDS-F-serratus_M_contig891:182033..182288Fucus serratus maleCDSF-serratus_M_contig891 182034..182288 -
1622932597.4875472-CDS-F-serratus_M_contig891:188027..1882011622932597.4875472-CDS-F-serratus_M_contig891:188027..188201Fucus serratus maleCDSF-serratus_M_contig891 188028..188201 -
1690964379.0335338-CDS-F-serratus_M_contig891:188027..1882011690964379.0335338-CDS-F-serratus_M_contig891:188027..188201Fucus serratus maleCDSF-serratus_M_contig891 188028..188201 -
1622932597.5464299-CDS-F-serratus_M_contig891:188571..1886131622932597.5464299-CDS-F-serratus_M_contig891:188571..188613Fucus serratus maleCDSF-serratus_M_contig891 188572..188613 -
1690964379.0433457-CDS-F-serratus_M_contig891:188571..1886131690964379.0433457-CDS-F-serratus_M_contig891:188571..188613Fucus serratus maleCDSF-serratus_M_contig891 188572..188613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig891.20280.1

>prot_F-serratus_M_contig891.20280.1 ID=prot_F-serratus_M_contig891.20280.1|Name=mRNA_F-serratus_M_contig891.20280.1|organism=Fucus serratus male|type=polypeptide|length=226bp
MQAFAMAAPKFNVKIFSDNVCPWCFVGKRNLESAMKQFEATQPNDTPPIF
NVSWKPFFLNVESPETSDVPIKEYLERKYGQHAGSRMATALERAGQSTGI
KFNNERRVHNTIISHRLVRLADGQGKGGDMIEHLFQGYFEEGRNIADVDV
LLELAQKAGVSCTKEFLQGSEGKREVLQEYERGVQSQGITGVPYYVLSRE
GSKSTLPLSGGQPPEAFVEAFEALL*
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mRNA from alignment at F-serratus_M_contig891:180023..188767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig891.20280.1 ID=mRNA_F-serratus_M_contig891.20280.1|Name=mRNA_F-serratus_M_contig891.20280.1|organism=Fucus serratus male|type=mRNA|length=8745bp|location=Sequence derived from alignment at F-serratus_M_contig891:180023..188767- (Fucus serratus male)
CTCGGATTTACAATCCCCCGATCCCTGACCCCTTTCGTCCCGCACAATCC
TCCGCTGAAACCCCTTCTGCCCGCGGGGAACCCGCTCATGATGCTCTTGT
TTTCAACCCAACTTCCCCACATCAACACATCTCCATCATCCGTATTCTCT
TCCCATGCAAGCATTTGCCATGGCAGCACCCAAGTTCAACGTTAAGGTAA
GAGTACCTAGTTGAGGAAATCTACACATCTTTCGTAACTGAGTCCCGTAT
ATTCAACACGAAGTCTACCCCTGGTTGTTTTCGACCATATCTTATGTCGA
GACTTCATATCGTATACTACTGTATGGAAGGAAACGATGTTGTCCAGACG
TGTGTCGTGTAACTGACGCTAGACTACACTCACCTCTCAGATTCCTTGAG
CGACATGTCGAACCGACCAGCTTGTACTTTGAGGTACGGAATCGTAAGGG
CAAGCATGTGTAGCGCACTTGCGACGTGAGTACGACAACAACAGCAGAGT
ACATAATCGTTTCACCCTCCCTCGTGCGACGCCCCCCCCCCGCGAAAACT
CTTTCCCTGGGAGCAGATATTCAGTGACAACGTGTGCCCCTGGTGCTTCG
TCGGAAAGCGAAATCTGGAGAGCGCGATGAAGCAGTTCGAGGCTACGCAG
CCGAACGATACCCCGCCGATATTCAACGTCAGCTGGAAGCCGTTCTTCCT
GAACGTAGAGTCACCCGAGACGTCCGATGTACCGATCAAGGTAGACACAC
AGAGGCGTGATCGGCAAGCACATGGTGTGCTTTACCCGAGCTTAGCTGTA
TTTTTTTTTGTAAGAAGAAATTCTGCACGACTGATGTCTGTAGTGAAGAC
GTCATCCCTGCACTACTACTGCTGTAGACTATAATAGCTCGAACCGGTAA
ATACTAAATACGATACGAGTGTAGATGTAGACGTGATACTGGTAAAAGAT
TGATTGTCCAATTATTATTATTATTATTATTATTTCCGCACGTAAGGCCC
GATCTTATGGATCAGAAAAAACGTTATCGAAAAAAAAAAAAACTGATAAC
GACCACAAAGTCGATCTTATGGATCAGAAAAACGTGTTTTCGGATCACTT
TTTTTCGGAGGAAGCGCTTTCGGAGGAAACGTTATCGAAAAATCCGGAAA
AAACGGAGGAAGATGTTATCAGAAAAAAAGTTATCAGAAAAATAGTTAGT
AGCGATACGAAGGCGTCCCTCAGACGGATGGACGCAAAAGTTCTAATATA
TGCCTTTAAACACAGAGCTCGTGTATCTTGGAGACAGAGGCATGGATGAC
TGTGTTGCGGCGGTGACGACCTCGGGGGCAGAATATCCACACCGCAAGCT
AAGAATCAAAAATACCAATCAGTTGGCACTCGTTCTAGGGTTGCTCGCCG
AGGAAGATACAATCGTGTCCCGAGAATAAATCTCTAGTTTTTGCAACGTG
CGTCGTGCAGCAGTTGACGTCCTCGGTACAGTACATATTGCACAGCCGTA
CTGCACAGTCGTACTGTTTGCATGGCACGTTGCGGCCTTCGAGCTGCGTT
CGTGTGGTTGTGCAAGGAAATGGTTAAAGATCACGTACTGTACCACGCCA
CAGTAGGTGCACAATATAATGTGCCTATCCGCAGGAGCAGTCCTTCGCTA
TGTGAAGTGGGCGAAGGCGTGCCGGACGGACGGACGCAAAAAAAGTTCAA
ATCTGCCTTCAAACACAGACCTCGTGTAGGTTGGAGACAGGCATGGGTGA
CTGTGACGCAGCGGTGACGGTCGCAATGGCAGCATGTCGACGCTGCAAGC
AGAGAATAAAAAATATCAATCAGTTGGCACTCGTTCTAGGGCTGCTCCAC
GTGGAAGATGCAATCGAGTCCCGAGAACACATCTTCTATCTGTAGCCTTT
GCAACGTGCGTCGTATACAGCAGTCACGTCCTCGGTGCAGATTACTTGTA
TATGTTTATAGAAAAACTAGAACACGCCTAGACCTTCTGAGATATCGCAC
AGACAGATCTGTTTGCATTGTACGTTGCGGCCTTAGAGCTTCATTCGTGT
GGTTGTGTAAGCCCGAAACGATCGAAGACCACCTGCTGTACCACGCAACG
GTTGTAAGAAGGTGCACAAGCAAGGCAATGAGCCTGCTCGCAGCAGTCCT
TCGCGACTTTTGCTGTGGGTGACAGCATTATCTAAAACATACAGCAGACT
GTGTACCAGGTTATACATTATGAACAGAATCTCCAGTAGAGTACAACTTG
CAGTCGCCGAGATTCATCGGCTTTGAAATACATTTGTGCTACTTACAACC
GTGGCGTGGCACAGGACATGATCTTCAATCGTGGGGAGCTTACACAATCA
CACGAATACAGCTGGCCGCGGCCGCGGTGCGTACCATGCAAACATACCAG
TACGGAAGAGCATTCGACACAAAAAAAAATAGGACCATAGTCCCAGGTCC
TACATCAGGACTGTCAGAATCAATATTTTCCGATAATGTTTTTTTTCTGT
CCCATAAATCACGTCGCATCGGTGTTCTCATCAGAAATTTTCTTGTCAGA
AAAAAAGTTTTTCGATAACGTTTTTTCTGATCCATAAGATCGGGCCTAAG
TCCGCCGATCTCTCGAGCCAGTGGTCACAGATGCAGGCTTCCCTTTCCAT
ACCATCGCTATATACAAAAAAACAAATAAAAAAAGAGAAAGAGAGGAAAA
AAATAAATAATAACTACTAAAATTAGAACACGCCTACACCTACCTGCGTT
TTTTAAAGAGAACACGCCAAGTAATTTATTACTTATAGTGTACAGTACGA
TAAAGTGCAGTACCCTAATAATAGTAATACCATAGTAAGAGTACCAAATA
TAGACTAGATTGTTGTTTCAAAGGCTAAAAATAACCTCTTTCATGGCATT
AATTACGATGCAAAGAAGACACCAAAACACAACAATTACAAAGGCACGAT
AAACTAGGATACAGCCCATTTTGTTACAACAGGTCTAAGATCGGATGGGT
GTCAATGAGGGAAGTCTACAAGATATAGATATAGACTAGAGGTTATAATG
GAAAATTTCCCAAGTGTTACACCAGCAGCGAAGAGCCCCATCTCTTTTGT
ACCAGTTACTACATATATTAAAGGGAAATGGCTATTTGCCCCACCGGTGG
GCCATTCCCAAATTTACCCCACCACCTGGATCTCGCGTCAGAAAACACGG
TTGGTCACAGTACATGCATGAGTGTGTTGGCGCGTCGCTGGGCTATCATG
GGGTCTATCGTGCAGTCCAAACGGTTCTGTCTACGTGCTGTTATGGCCGG
TGGGGTGGTTGGTGTTTTCTGGTATGTAAGGGCAAATAGCCATACATACC
AGAAAACACCAACCACCCCACCGGTCGTGGTAGCACGTAGACAGGACCGT
TTGGGCTGCACGATAGACCCCATGATAGCTAACCCTAACCCTAACACACC
CATGCATGTACTGTGACCAGCCAAGTCTTCTGACGCGAGATCCAGGTGAG
GGGGTAAACAAGAGAATCGCCCACCGGTGGGGCAAATAGCCATAATATTA
AAATACAAACCGCACAGTACTGTCGTTCGCAGTCGCATCTGGTCTCACTG
GCATGGTCTGTAGTTGAACATCACAGCCGGAGCAGCGCTCAGAGATCGTG
AGCCGGGACTTGGCCAGAGTCCGTTTCGGGTGCAGTGCTCGACCTCTCTG
ATGTTTTCTCAAAATCGCTCTACCGACGGAGGTTGGGACGTTATATGGCG
TTCTTGCGGTATTCAGTTTTGAAAACCCAAGCGTGAATATTAATATTTGG
TGAGACATAGTGGGTGGAGAAAGGGCGGGGGATGGTGACAGTAAGGATCG
AGTCCAATACTGACTGTGTAGGAGGGGAGTTTTTTTATTACTTGTCGATC
GAAGCATGATCCGTCCAGCCAGCCTTACGCCTAGTTTACGCCGATCGGCT
CGTGAAGCTCATGAGTTGCCACAGTCGAACACAAGTCATTGCATTTCTCC
GTTCAGACGGAGGGGGGAGTCGACGCAGGAGCGTTTTTCCGGACCAAATG
AAACACTGAAGCGCCTAATATTAAGATAGGTTAGCTATCGCTATACGCTC
GCTAAAGGATAATTTTATAAATATCGTCAGCTTAATACAGGTGTTGGTGT
AATGTATGGTTGGTGTTTGTCTTGTTGTACTGGTGTCGTCCTCAACACTG
TACGGAAAAGTGCCACGCCTGATTCTATAGAAAAGAAGCAGGCTGACGCA
GCAGGTAGTCGTCTTTTCTCGAAGGCATTTTCCGTGCGGCGCGTTGTTGT
GTAATTGTTCATCGGCGGAGCGGGAAGGTCTATCTACACACGTACAGAAG
TGTTTTCTTCCCATTTATTCTGGACGCCAAGTTCGTTGGATCTACCAGCC
GGGCTCACACAGGATTTCGCATCCACCTTGCTTCTGCGGTGCATGCCTTT
ATTTTTCTCGCGAGAAGGATGCAGCCGTTCCTTTACCCTCGTCGACGGTT
AGGTCGAATTTTGTGTACTAACAAATTAATCGTCCTCGACTTGTTCGGCA
TTTCATTTTTATTTTATGTTCGTGAGAAAAAATCCCGTTTACCGGGATTC
GAATTCACGTCCCAACGTGTCAGAAGGTTACGAGTTTACTTCTGAGCTAC
GGTGGCGTACAACAGGAATGTTCAGCAAAACCCTCTACGCGTATATCTCT
CCCCGGTTTTTGTCAACGATTTTTGATCCCGATGCAAATTCAATATTCTT
ACACGAGCACACCTTTGCACAGCAGCAGACTATGTGCAGAAAACCCTGTG
TTCGAAATTGTTCAAGAGAGCGTGAAGGTCTGTACAAGGGGAGTGTCCAG
CAGAACCCATCTCTGCCCGGTTCTCGCCTACGATTTTTTTATCGCGATGC
AAATTCAGTACTCCTACTAGCACACCTTTGTACAGCAGTATCAATACGTT
CTATGCGCAGAACCCTGCGTTCGAAATTATTCATGATGAGAGCGTGAAGG
TCTATCTATACACACGTACAACGGGAATGTTCAGCAGAACCCTCTATGCG
TAGAATCCTATTAATAAGGAATTTTCCTTCTCTCCCCGGTTCTCGCCAGC
GACTCTTGAACCCGATGCAAATTCAGTACTATTACGAGCACACCTTTGTA
CAGCACTAGGCTCTAAGCGCAGAAGACCCTGTGTTCGAGGTTGTTCAAGA
GGGCGTGAAGGTCTGAACAACCGGAATGTCCAGCAGAATCCTTAATGCGC
AGGCAGCATCCTGTGTCTGTAAGGATATTCCCATCTCTCCCCGGTTCTCG
CCTAGTTTTTTCTATCGCCGGGCAAATTCAGCACTATACACCATACAGTA
GTGAACAGTTTTTGATACACTCCAGCCCAAACTGATGCACCCTGCAGATA
AGAAGCTCGCTACGCTCGCAATATATATATATATGAAAAAATGTATGGTA
TAATTTTTAAAGAAAATCCAGAACGCACCTAGACCTTCTAAGGGGTTCAA
CGATTGGGGAGGGCGGGGATACGACGATTTCGTCCCCGGGGAGGTCACCA
AAATAGCCCGCTCCGGGGATGAAACTACATGATCACCGACATATTCGGCA
AGCTTGCCCTGAATCTATCGCATTTAACCAGGGGGTTGGTCAAATATGTC
CCCGGTAGGAGCTATTTTCGTCCCGTTCCTTCCCAAAACGGGGACAAAAA
TGTTACATCCCCTGCCCCCCCCAATCGTTGAACTGGTCTTCTGACCATCC
CCCAGTAAGGGGATGTTTTGCATAGCACAGCACCACTTACTACTACAGAG
CATGAAAATGTTTCTACATGTTGTATCGAGAATGTACAGCAGCAGTAGTA
CGTTCTATGCATAGAACTCTGCGCTCGAAATTGTTGATCAGCAGAAGAGC
GTGAATGTCTATCTACACATACACGTACAAAGGGAACTCAGAAGGTCTAG
GTACGTTCTGTATTTTATTTAAAAGGGAATGTTCAGCAGAAGAACCCCTA
ATGCGCAGAGCATCCTGTGTCACTATAAGAACATCTATCCCCAGTTCTCG
CCTACGAGCACACCTATGTACAGCAGTAGGCTCTATCGAAAACCTTGTGT
TCGAAATTGTTCAAAATGAGAAGCGTGAAGGTCTATGATCTACACAAGAT
GTAAACCTTTACACTCTTTAACTCCACGATCACTTGTCCGCCGAGCCATA
ACTTTACGTTGGGGAAGAGCTGAGTGCTGTTCAAAGAAATACCGAATATA
TCGCCCCCGGAATAGAACATAGGCCGTGCCGAAATGGATGAAGAACTACC
GAATATAAGCTGAATGAAGTACGGATTGTCACAAGGCCGAAATTTTGCAA
AAAGTGCCGAAATGGTATTCTGATTGGTTAATGTGTACAGTCTTTGATAC
GCCCGAGCCCAAATTGATGCACCTTACAGATTAGAAGCTCACTACGCTCG
CAATAATGCTGTGTAACGCGTGACCACAGGAATACCTCGAGAGGAAGTAC
GGGCAGCATGCGGGTTCGCGGATGGCGACGGCTCTGGAGAGAGCCGGCCA
GTCGACAGGTATAAAGTTCAACAACGAACGGAGGGTGCACAACACCATCA
TATCTCACCGCCTGGTTCGCCTTGCCGACGGGCAGGGGAAGGGCGGAGAC
ATGATTGAGCACCTGTTCCAAGGATACTTCGAGGAGGGCAGGAACATCGC
GGACGTCGATGTATTGCTTGAACTCGCCCAGAAGGTTAGTCTACGCTTGG
GGAAGTCGATGGATTGTTCGTCACCGAGGTTAAAGTGGTGGACGTGCGTT
ATTGCCAGCAGTGCTGTAATAGGTGGCGCGGAAAGCTTTTCAAGAACACA
AGCGTTGCGACTCGCGTCCTTTTTTTCTTCACGTCGTCGCTCGTTTCCTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTCCCCT
TTAAACCACTTGAGCCAAAAACGAGTAGGCTGTCGCTCGTATGATTCGCT
CTGAGCAATTCTTTAGGGTCGAAGAACCTCGTCATATCTTGACCCGCTCA
CACGTGTGCCCCTGATGGCCATTTGCCTACCCATACGCCCAACGACCCCG
CTCCGACGCCACACGACACAAGGCTGGAGTATCGTGCACCAAGGAATTTC
TTCAGGGGTCGGAGGGCAAGCGAGAGGTCCTCCAAGAGTACGAGAGGGGT
GTTCAGTCTCAGGGCATCACCGGCGTGCCGTACTATGTTTTGTCGCGTGA
GGGAAGCAAGAGCACCCTGCCGCTATCGGGCGGACAGCCTCCCGAGGCAT
TCGTTGAGGCTTTCGAGGCGCTGCTGTGATGGAGTATGATCGAATCTATT
TCTGTAGCAAAGTTTCATTCTCACACATTGTACATGCAAGTTAATGCTGT
ATTCTTGTATGCTTGACGCAAGACTGTCGGATGGCGGAAGGCTTGTCTGG
GTCGCATAGTCGCGAAATGTTGTGGCGGATACGGAAGCACATAGTCCTGT
CCTTTTTTTTTGTTCTTTTTTTTTTGTTGGCGCTGAATTCGACTTGGGCA
AGCTCCGTCGAGTGCCCGACTGTTGGAATCAGTTGTGCCTCGGCTGTGGT
GCAATTTTTGATCGATTTCCCGTTGCAGGCGATTCAGCGTTGTGCGAGTC
TAGATCCGCGCAGGCAAGGGTATGCATGCTCCCGAAATTGGTGAATTCGA
AAACATCGTGTGGCTTTCTTGGCACAATGGGCATACGCCTCAGCAGCCGC
CACCGCTTAAGCATTTTTCGCCGGCGCTCCAAACCTATTAGAATTGTATA
TTCTCCTTCGTACGTTATACTTGGTACTTGTTGAATCACCCAACAAGATC
ATTTTGTGCCGCCGCATGGCTGGTGTATGTTCGCTGAATGATTGATTTTA
AGCATCGATTCAACTCTGTGCTTCCAAGGGAGAGAACGTTTCGAAATTAA
GCTCTAGATCAAGGCGGCACCCTAAACATGGTGATCCAAACGAGGTAAAC
TGGCCAGAATTGTCCACTAGCCAGACTTGTCCACTTCGCTACGAAGTCAC
TCCGTTGTCTTCAACAATCTTCCGATCTTCGGGTTAATTAAGTGCATGTT
GTAAACCATTGACTCGATCGGCTATAGTCAACGTAGTTGTCGGTCATCAC
ATATATAGCAGGGTATGGATCAACCTGGTAAGGTTGGTAATTCTGCTCGT
GGTTAGCTGAACAAGGAAAATTGACATTTCCCTGTCCCCGTTCGCGCCTG
AGAAGTTGGCCTCGCGAGACGGATTCGGCCGTCCTGTCCCGTGTCAGCCT
GCTCATTTCCATACTCAGGCTGAATATGATGCTCACTCACGGGATTCCTC
TCGATTTCCACGGTGGCGTCCATTTATTTATTTAAACCGCCATTCGCCAT
CAGGTCAGTCACGAGTTTATCGGGTCGGCCAATTGCGTAACGATGGCGAT
CACTGCCAAGAGTCCGCTGGCTCAGGACCAGTAAACCTCAACGTAGTTCC
AGGGTGCTGCCTTGGCAGCTCACTATGGACCGATTGATGTGGTATGAAGT
GGGCATGTTGGAAGCATCGGAGGCGGACATCAACCGTCCGAACATGCACA
ATACCCTTTGAGCTTGGGCCCCGATAGCCACACGTGTTTGTTTTGTTCCT
TTTGATTATTTGGAGATGCCGCTTTTTCCGAGTATTTTTTGTACCATTTC
CGCTTTCTCTTCGTGTCGAGAGTGCGTCATACGTTCTTTCCTTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig891:180023..188767-

>mRNA_F-serratus_M_contig891.20280.1 ID=mRNA_F-serratus_M_contig891.20280.1|Name=mRNA_F-serratus_M_contig891.20280.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig891:180023..188767- (Fucus serratus male)
ATGCAAGCATTTGCCATGGCAGCACCCAAGTTCAACGTTAAGATGCAAGC
ATTTGCCATGGCAGCACCCAAGTTCAACGTTAAGATATTCAGTGACAACG
TGTGCCCCTGGTGCTTCGTCGGAAAGCGAAATCTGGAGAGCGCGATGAAG
CAGTTCGAGGCTACGCAGCCGAACGATACCCCGCCGATATTCAACGTCAG
CTGGAAGCCGTTCTTCCTGAACGTAGAGTCACCCGAGACGTCCGATGTAC
CGATCAAGATATTCAGTGACAACGTGTGCCCCTGGTGCTTCGTCGGAAAG
CGAAATCTGGAGAGCGCGATGAAGCAGTTCGAGGCTACGCAGCCGAACGA
TACCCCGCCGATATTCAACGTCAGCTGGAAGCCGTTCTTCCTGAACGTAG
AGTCACCCGAGACGTCCGATGTACCGATCAAGGAATACCTCGAGAGGAAG
TACGGGCAGCATGCGGGTTCGCGGATGGCGACGGCTCTGGAGAGAGCCGG
CCAGTCGACAGGTATAAAGTTCAACAACGAACGGAGGGTGCACAACACCA
TCATATCTCACCGCCTGGTTCGCCTTGCCGACGGGCAGGGGAAGGGCGGA
GACATGATTGAGCACCTGTTCCAAGGATACTTCGAGGAGGGCAGGAACAT
CGCGGACGTCGATGTATTGCTTGAACTCGCCCAGAAGGAATACCTCGAGA
GGAAGTACGGGCAGCATGCGGGTTCGCGGATGGCGACGGCTCTGGAGAGA
GCCGGCCAGTCGACAGGTATAAAGTTCAACAACGAACGGAGGGTGCACAA
CACCATCATATCTCACCGCCTGGTTCGCCTTGCCGACGGGCAGGGGAAGG
GCGGAGACATGATTGAGCACCTGTTCCAAGGATACTTCGAGGAGGGCAGG
AACATCGCGGACGTCGATGTATTGCTTGAACTCGCCCAGAAGGCTGGAGT
ATCGTGCACCAAGGAATTTCTTCAGGGGTCGGAGGGCAAGCGAGAGGTCC
TCCAAGAGTACGAGAGGGGTGTTCAGTCTCAGGGCATCACCGGCGTGCCG
TACTATGTTTTGTCGCGTGAGGGAAGCAAGAGCACCCTGCCGCTATCGGG
CGGACAGCCTCCCGAGGCATTCGTTGAGGCTTTCGAGGCGCTGCTGTGAG
CTGGAGTATCGTGCACCAAGGAATTTCTTCAGGGGTCGGAGGGCAAGCGA
GAGGTCCTCCAAGAGTACGAGAGGGGTGTTCAGTCTCAGGGCATCACCGG
CGTGCCGTACTATGTTTTGTCGCGTGAGGGAAGCAAGAGCACCCTGCCGC
TATCGGGCGGACAGCCTCCCGAGGCATTCGTTGAGGCTTTCGAGGCGCTG
CTGTGA
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