mRNA_F-serratus_M_contig891.20275.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig891.20275.1
Unique NamemRNA_F-serratus_M_contig891.20275.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig891.20275.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.330e-16
Identity = 77/263 (29.28%), Postives = 93/263 (35.36%), Query Frame = 2 
Query:    2 RGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTAVGIIHVQVRQASSHA*TPLQNVPLKPRFSLA*IPTNAYYLVRQQTDYY*HPQPYLTALQRNYIGGWVRRLHQNSRDPLLACGESVQTKNKTSRLFCMARMMLHL*SSGITLFIGRRVYVPG*RRMH*CECQVSMNFLFM*RCVPSLLQMGDGGIVATTTCWEHGNWLQYFIAYLMMGVVFIGIEALRRAAIGDLDASIECSEADADFKGWLSKEEYMAEKIIEEKK 790
            RGAILVSLCWVA+LVHIIDRKWWQA+VWA+ S+  TAVGIIHV V                                                                                                  +G   F                    ++  L    C P      D  +V T +CW+H +   Y  AYLMM VVF+ IE +RRA +G+LD  I   EADA FK W   E       +EE K
Sbjct:  442 RGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIHVPV--------------------------------------------------------------------------------------------------AGFDDFTS------------------TVGDL----CTPVT---DDLEVVTTASCWDHADQWHYMTAYLMMAVVFVAIEGVRRAGVGNLDEPILTEEADA-FKDWYGDEPPTTGPKVEEDK 580
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig891.20275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHI4_ECTSI4.330e-1629.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig891contigF-serratus_M_contig891:35715..37494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size642
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig891.20275.1prot_F-serratus_M_contig891.20275.1Fucus serratus malepolypeptideF-serratus_M_contig891 36271..37234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.8243766-UTR-F-serratus_M_contig891:35714..358471622932596.8243766-UTR-F-serratus_M_contig891:35714..35847Fucus serratus maleUTRF-serratus_M_contig891 35715..35847 +
1690964378.6600435-UTR-F-serratus_M_contig891:35714..358471690964378.6600435-UTR-F-serratus_M_contig891:35714..35847Fucus serratus maleUTRF-serratus_M_contig891 35715..35847 +
1622932596.8922274-UTR-F-serratus_M_contig891:37234..374941622932596.8922274-UTR-F-serratus_M_contig891:37234..37494Fucus serratus maleUTRF-serratus_M_contig891 37235..37494 +
1690964378.7178526-UTR-F-serratus_M_contig891:37234..374941690964378.7178526-UTR-F-serratus_M_contig891:37234..37494Fucus serratus maleUTRF-serratus_M_contig891 37235..37494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.842287-CDS-F-serratus_M_contig891:36270..363431622932596.842287-CDS-F-serratus_M_contig891:36270..36343Fucus serratus maleCDSF-serratus_M_contig891 36271..36343 +
1690964378.6776133-CDS-F-serratus_M_contig891:36270..363431690964378.6776133-CDS-F-serratus_M_contig891:36270..36343Fucus serratus maleCDSF-serratus_M_contig891 36271..36343 +
1622932596.8584604-CDS-F-serratus_M_contig891:36744..368561622932596.8584604-CDS-F-serratus_M_contig891:36744..36856Fucus serratus maleCDSF-serratus_M_contig891 36745..36856 +
1690964378.6919703-CDS-F-serratus_M_contig891:36744..368561690964378.6919703-CDS-F-serratus_M_contig891:36744..36856Fucus serratus maleCDSF-serratus_M_contig891 36745..36856 +
1622932596.8735447-CDS-F-serratus_M_contig891:37170..372341622932596.8735447-CDS-F-serratus_M_contig891:37170..37234Fucus serratus maleCDSF-serratus_M_contig891 37171..37234 +
1690964378.7034442-CDS-F-serratus_M_contig891:37170..372341690964378.7034442-CDS-F-serratus_M_contig891:37170..37234Fucus serratus maleCDSF-serratus_M_contig891 37171..37234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig891.20275.1

>prot_F-serratus_M_contig891.20275.1 ID=prot_F-serratus_M_contig891.20275.1|Name=mRNA_F-serratus_M_contig891.20275.1|organism=Fucus serratus male|type=polypeptide|length=83bp
MGDGGIVATTTCWEHGNWLQYFIAYLMMGVVFIGIEALRRAAIGDLDASI
ECSEADADFKGWLSKEEYMAEKIIEEKKPKHE*
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mRNA from alignment at F-serratus_M_contig891:35715..37494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig891.20275.1 ID=mRNA_F-serratus_M_contig891.20275.1|Name=mRNA_F-serratus_M_contig891.20275.1|organism=Fucus serratus male|type=mRNA|length=1780bp|location=Sequence derived from alignment at F-serratus_M_contig891:35715..37494+ (Fucus serratus male)
GCGCGGGGCCATCCTCGTGTCTCTCTGCTGGGTCGCCATTCTGGTGCACA
TCATTGACCGCAAGTGGTGGCAGGCGGCCGTCTGGGCTCTCTTCTCGTCC
ATCCTTACCGCGGTTGGCATTATCCACGTGCAGGTGAGGCAGGCGTCTTC
TCACGCTTAGACGCCGCTGCAAAACGTGCCGCTGAAACCTCGGTTTTCTC
TCGCCTAAATTCCAACGAACGCTTACTACTTGGTGCGACAGCAGACAGAC
TATTATTAGCACCCCCAACCCTATCTCACTGCCTTACAACGCAATTATAT
AGGTGGCTGGGTTCGACGTCTTCACCAAAACAGCAGGGACCCTTTGCTCG
CCTGTGGTGAGTCTGTTCAGACTAAAAACAAAACTTCACGTTTATTCTGC
ATGGCTAGGATGATGTTGCATCTGTAAAGCAGCGGTATCACGTTGTTCAT
AGGCCGTCGCGTGTACGTACCTGGTTAACGTCGCATGCACTAGTGCGAGT
GCCAAGTCAGTATGAATTTCCTGTTTATGTGACGCTGCGTGCCCTCTTTG
CTTCAGATGGGAGACGGCGGCATCGTAGCCACCACGACCTGCTGGGAACA
CGGCAACTGGTTGCAGTACTTTATCGCATGTGAGTCGACTGCCGGTTCTT
AAAGCGTGATGGCATCATCCTTCTAATGAGTTGAACGAGCGCCGTCAGAC
GCTGGTGTTGCTCTGCGACTAGAATCGGCTTTCAGGTCGACCAAGTCCTA
GGACAACATGAAGTCGAGTTGGCACACGGGAATTAACAGACGGCTAGAAA
TATTTCAAAACCTGATCTACTTCGTGCTCCGTAGTATAATACTTTGGATC
TGTCGTGAATGACTTTATGGCTGCTCCAGAACGTTCTAATGGAATCTGAA
ACTCGTCGCCACCACCACCCGTCGATCAATCAAACCATCTCAAGCCCTCA
AAAATAGGTTGCACTCGTTTCCTCGTCAAACACATCGCTCGAATCACAAC
CCCTGGCGTGCCAACAATCCGCACGTCCAGACCTGATGATGGGAGTAGTT
TTCATCGGGATCGAGGCCCTCAGGCGTGCGGCTATCGGTGATCTTGATGC
ATCGATCGAGTGTTCTGAGGCAGATGCCGATTTCAAGGGCTGGTGAGTAA
AAACATAATACTACAGACACTTAGCGTAGGAAGGAGTCGGAACAGGTCTG
ACGAGGAGTAGACCCAAGTAAGTACAGTCAACATCGTACCGGTAGTCAAG
TGAATGTCGATGATGTTCAGGGTACCCCGGGTCGGAGAGAACGGTAGAGG
ACGTTTTCCATGCTCTCTTTTACTTGGGAAGATAAGGCCCAGTGGCTATC
ACAAGAGATATAATTCCGCAACTGTGTAGAGTAACGCCTCTGGGCAACGT
GTTGACTTCCCAACCTCCCTGGAACTCGTACTCCGTCGTTATGTGTTACT
TGACAGGCTTAGCAAGGAGGAATATATGGCCGAGAAGATTATTGAAGAGA
AGAAGCCCAAACATGAGTAATCTGAGATCGAAGCCATCACGAACCCCATC
CCATGACGTTTGGCTCTGATTCTAATCAACCTTTCAATGCCAGGACACAA
TTCCAACTGAAAAAAGACAGTAGTTACCTTCTATGGGCATCCACCAGAAG
AGGCTTTAAGTGACGGCGGCCACACAGTTTTACGGTACTCTACGTCTAAT
CTGGAGAGAAAGTACTCTACTAGGCATGAGGCTTCAAACGCCAATCAGAC
TATACCCTCCGTCTTAATTTTAGTGGCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig891:35715..37494+

>mRNA_F-serratus_M_contig891.20275.1 ID=mRNA_F-serratus_M_contig891.20275.1|Name=mRNA_F-serratus_M_contig891.20275.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig891:35715..37494+ (Fucus serratus male)
ATGGGAGACGGCGGCATCGTAGCCACCACGACCTGCTGGGAACACGGCAA
CTGGTTGCAGTACTTTATCGCATATGGGAGACGGCGGCATCGTAGCCACC
ACGACCTGCTGGGAACACGGCAACTGGTTGCAGTACTTTATCGCATACCT
GATGATGGGAGTAGTTTTCATCGGGATCGAGGCCCTCAGGCGTGCGGCTA
TCGGTGATCTTGATGCATCGATCGAGTGTTCTGAGGCAGATGCCGATTTC
AAGGGCTGACCTGATGATGGGAGTAGTTTTCATCGGGATCGAGGCCCTCA
GGCGTGCGGCTATCGGTGATCTTGATGCATCGATCGAGTGTTCTGAGGCA
GATGCCGATTTCAAGGGCTGGCTTAGCAAGGAGGAATATATGGCCGAGAA
GATTATTGAAGAGAAGAAGCCCAAACATGAGTAAGCTTAGCAAGGAGGAA
TATATGGCCGAGAAGATTATTGAAGAGAAGAAGCCCAAACATGAGTAA
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