mRNA_F-serratus_M_contig890.20269.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig890.20269.1
Unique NamemRNA_F-serratus_M_contig890.20269.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.010e-55
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            KRKN N+ EK EVIRHLL GSK+GVL  GA+KAAAE+FGC W++ KRLWR+YD QH+AGV+ PQLAN R G SGR+ +PIEELR RLRDIPLNDRTTQRR AAAL IP  TLH NLKALGLR
Sbjct:   12 KRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.350e-50
Identity = 83/122 (68.03%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            KRKN N+ E  EVIR+LL GSK+GVL+ GA+K A E+FG  W++IKRLW +YD QH+AGVA PQ+ N RKG SGR+ IP+EEL+ R RDIPLN+RTTQRR AAAL IP++TLH NLKALGLR
Sbjct:   12 KRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.340e-44
Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            KRKN N LE+ EVIRHLLA S+DGVL+ GAY+ AAE++GC W++IK +W K++++  AG     + N RKG SGR+ I +E+LR RLRDIPLN+RTTQRR AAALGIP+ TL  NL+ LGL+
Sbjct:   12 KRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLK 133          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.510e-42
Identity = 73/122 (59.84%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            KRKN N  E+ EV+R+LLA S+DGV + G+Y  AAE++GC W++IKR+W+K++++ ++G     + N RKG SG + I IE LRARL +IPLN+RTTQRR AAALGIP++TLHNNLKALGLR
Sbjct:   12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.730e-41
Identity = 73/122 (59.84%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            KRKN N  E+ EV+R+LLA S+DGV + G+Y  AAE++GC W++IKR+W+K++++ ++G     + N RKG SG + I IE LRARL +IPLN+RTTQRR AAALGIP++TLHNNLKALGLR
Sbjct:   12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.100e-27
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  151 KYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            +YD QH+AGVA PQ+ N RKG SGR+ IP+EEL+ RLRDIPLNDRTTQRR AAALGIP++TLH NLK LGLR
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLR 73          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.230e-27
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  133 IKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
             KRLW +Y+ Q +AGVA P++ N RKG SGR+ IPI+ELR RLRDIPLNDRTTQRR AAALGI   TL +NLKALGLR
Sbjct:   17 FKRLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLR 94          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.560e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  151 KYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            +Y  QH+AGVA P++ N R G SGR+ IP+EELR RLRDIPLN RTTQRR AAALGIP++TLH N KALGLR
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLR 72          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-17
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   37 VIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHNNLKALGLR 366
            ++  LL GS +G L  G  K     +    +++ + W+ Y+++ +AG   P L N RKG SG++ + I  L+  L+DI L +RTT R  AAALGIP++TL +NL  LGLR
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLR 110          
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Match: A0A225WYZ1_9STRA (Mariner Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYZ1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.330e-10
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   10 NLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWRKYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRRFAAALGIPRATLHN 342
            +L+D  +  ++ HLL  S  G L RGA  +AA +F     ++ R+W +Y++   AG     +++  KG SGR+     EL A++R +P+  RT  R+ A +LG+    + N
Sbjct:    5 SLDDSTRRAILLHLLIASTGGELPRGAKTSAATKFNVHRHTVDRIWSRYNDSVAAGDLSGDVSSRYKGNSGRKGYDRVELAAKIRSVPVEQRTNYRQTAKSLGLSVGLIFN 115          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig890.20269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L9I0_9PHAE1.010e-5574.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE4.350e-5068.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE3.340e-4460.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE1.510e-4259.84Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE3.730e-4159.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE1.100e-2775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE4.230e-2770.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE1.560e-2370.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD91_9PHAE1.820e-1740.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225WYZ1_9STRA1.330e-1032.43Mariner Transposase n=1 Tax=Phytophthora megakarya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig890contigF-serratus_M_contig890:160434..160799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog4792.ETI48513
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QH7V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932595.4454317-CDS-F-serratus_M_contig890:160433..1607991622932595.4454317-CDS-F-serratus_M_contig890:160433..160799Fucus serratus maleCDSF-serratus_M_contig890 160434..160799 -
1690964377.9349842-CDS-F-serratus_M_contig890:160433..1607991690964377.9349842-CDS-F-serratus_M_contig890:160433..160799Fucus serratus maleCDSF-serratus_M_contig890 160434..160799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig890.20269.1prot_F-serratus_M_contig890.20269.1Fucus serratus malepolypeptideF-serratus_M_contig890 160434..160799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig890.20269.1

>prot_F-serratus_M_contig890.20269.1 ID=prot_F-serratus_M_contig890.20269.1|Name=mRNA_F-serratus_M_contig890.20269.1|organism=Fucus serratus male|type=polypeptide|length=122bp
KRKNLNDLEKAEVIRHLLAGSKDGVLKRGAYKAAAEEFGCEWQSIKRLWR
KYDEQHQAGVAHPQLANGRKGKSGREVIPIEELRARLRDIPLNDRTTQRR
FAAALGIPRATLHNNLKALGLR
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mRNA from alignment at F-serratus_M_contig890:160434..160799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig890.20269.1 ID=mRNA_F-serratus_M_contig890.20269.1|Name=mRNA_F-serratus_M_contig890.20269.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig890:160434..160799- (Fucus serratus male)
AAACGCAAGAATCTCAACGATTTGGAAAAAGCTGAGGTGATTCGGCACCT CCTCGCTGGCAGCAAGGACGGGGTTTTGAAGCGAGGTGCGTACAAGGCAG CCGCGGAGGAGTTCGGCTGCGAATGGCAGTCGATTAAGAGACTGTGGAGG AAGTACGATGAGCAGCATCAAGCAGGGGTCGCCCACCCGCAGCTGGCAAA CGGTCGCAAGGGGAAAAGCGGCAGGGAGGTCATTCCCATCGAAGAATTGC GTGCGCGCCTCCGTGATATCCCGCTGAACGACCGCACCACACAGCGCCGC TTCGCTGCGGCGCTCGGGATTCCCCGGGCTACACTGCACAACAACCTGAA GGCGCTTGGATTGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig890:160434..160799-

>mRNA_F-serratus_M_contig890.20269.1 ID=mRNA_F-serratus_M_contig890.20269.1|Name=mRNA_F-serratus_M_contig890.20269.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig890:160434..160799- (Fucus serratus male)
AAACGCAAGAATCTCAACGATTTGGAAAAAGCTGAGGTGATTCGGCACCT
CCTCGCTGGCAGCAAGGACGGGGTTTTGAAGCGAGGTGCGTACAAGGCAG
CCGCGGAGGAGTTCGGCTGCGAATGGCAGTCGATTAAGAGACTGTGGAGG
AAGTACGATGAGCAGCATCAAGCAGGGGTCGCCCACCCGCAGCTGGCAAA
CGGTCGCAAGGGGAAAAGCGGCAGGGAGGTCATTCCCATCGAAGAATTGC
GTGCGCGCCTCCGTGATATCCCGCTGAACGACCGCACCACACAGCGCCGC
TTCGCTGCGGCGCTCGGGATTCCCCGGGCTACACTGCACAACAACCTGAA
GGCGCTTGGATTGAGGAAACGCAAGAATCTCAACGATTTGGAAAAAGCTG
AGGTGATTCGGCACCTCCTCGCTGGCAGCAAGGACGGGGTTTTGAAGCGA
GGTGCGTACAAGGCAGCCGCGGAGGAGTTCGGCTGCGAATGGCAGTCGAT
TAAGAGACTGTGGAGGAAGTACGATGAGCAGCATCAAGCAGGGGTCGCCC
ACCCGCAGCTGGCAAACGGTCGCAAGGGGAAAAGCGGCAGGGAGGTCATT
CCCATCGAAGAATTGCGTGCGCGCCTCCGTGATATCCCGCTGAACGACCG
CACCACACAGCGCCGCTTCGCTGCGGCGCTCGGGATTCCCCGGGCTACAC
TGCACAACAACCTGAAGGCGCTTGGATTGAGG
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