mRNA_F-serratus_M_contig890.20267.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig890.20267.1
Unique NamemRNA_F-serratus_M_contig890.20267.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: B7G286_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G286_PHATC)

HSP 1 Score: 58.5 bits (140), Expect = 4.430e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:   83 KPSYLSPETFS-TSAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEGQME 259
            K +Y+SPE F+ T ++DG  +D+++AG +L+IMLTG P +D+  R DQR+ L+     ME
Sbjct:  315 KHNYMSPEVFANTDSFDGFAIDLWAAGVILYIMLTGFPPYDQASRTDQRFELIATGRLME 374
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A1E7FBI2_9STRA (Ser/thr kinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBI2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.620e-8
Identity = 26/54 (48.15%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:   83 KPSYLSPETFS-TSAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMV 241
            K +Y+SPE F+ T+A+DG  +D+++AG +L+IMLTG P +D+  + DQR+ L+V
Sbjct:  137 KHNYMSPEIFANTNAFDGFSIDLWAAGVILYIMLTGFPPYDQASQTDQRFDLIV 190
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A1V9ZLK7_9STRA (Protein kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLK7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.770e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 2 
Query:   92 YLSPETFSTSAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEG 250
            Y++PE F+ + Y+  KVDV+S G MLFIMLTG P F +  R D R+  +  +G
Sbjct:  784 YMAPEMFTEAPYEPAKVDVWSLGVMLFIMLTGLPPFRQARRLDDRFECLTTDG 836
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A485KZD5_9STRA (Aste57867_13912 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZD5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.760e-7
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 2 
Query:   59 SIHDSRRSKPSYLSPETFSTSAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEG 250
            +I D R  KP Y++PE +  + YD  K DV+S GA+ FIMLTG P  D     D R+ ++   G
Sbjct:  173 TICDGRVGKPLYMAPEVYGQTYYDPAKADVWSLGALFFIMLTGVPIVDVAAPTDPRFCMLQAAG 236
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A7S2P5Y1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5Y1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.080e-7
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:   50 RRMSIHDSRRSKPSYLSPETFST-SAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMV 241
            RR+ +      K +Y+SPE F+   A+DG  +D+++AGA+L+IMLTG P +D P   D R+ ++V
Sbjct:  262 RRLIVPQGSCGKLNYMSPEIFANFEAFDGFAIDLWAAGAILYIMLTGFPPWDTPQLTDMRFEVIV 326
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A1Z5JDY4_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDY4_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 2.870e-7
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:   83 KPSYLSPETFSTSA-YDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMV 241
            K +Y+SPE F+ +  +DG  +D+++AG +L+IMLTG P +D+  R D+RY L+V
Sbjct:  290 KHNYMSPEVFANAEDFDGFAIDLWAAGVVLYIMLTGFPPYDQASRADKRYELIV 343
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A7S2RKJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKJ1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.270e-7
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   83 KPSYLSPETFSTS-AYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEGQM 256
            K  Y+SPET+    ++DG  +D+++AG +L+IMLTG P +D P   DQR+ ++V  GQ+
Sbjct:  262 KMQYMSPETYKNDDSFDGFAIDLWAAGVILYIMLTGFPPYDHPSIKDQRFEIIVT-GQL 319
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A7S3PX35_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX35_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.440e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   83 KPSYLSPETFSTS-AYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEGQM 256
            K +Y+SPE F    ++DG  +D+++AG +L+IMLTG P +D     DQR+ ++V EGQM
Sbjct:  354 KHNYMSPEIFQNKESFDGFSIDLWAAGVILYIMLTGFPPYDHATLADQRFEVIV-EGQM 411
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A7S0ATK8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATK8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.480e-6
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 2 
Query:   83 KPSYLSPETFSTSA-YDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEGQM 256
            K +Y+SPE +     +DG  +D+++AG +L+IMLTG P +D     DQR+R++V EG +
Sbjct:   10 KHNYMSPEIYRNERPFDGFAIDLWAAGVILYIMLTGFPPYDNANMADQRFRIIV-EGNL 67
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BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Match: A0A1W0A2X1_9STRA (Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2X1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.260e-6
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:   83 KPSYLSPETFSTSAYDGVKVDVFSAGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEG 250
            K +Y++PE  +   YD  K+DV+S G MLFIM++G P  D P   D+R+ ++   G
Sbjct:  176 KLNYMAPEVHAGGVYDPAKIDVWSLGMMLFIMISGVPLVDVPSAVDRRFSILKKYG 231
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig890.20267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7G286_PHATC4.430e-845.00Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FBI2_9STRA5.620e-848.15Ser/thr kinase n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A1V9ZLK7_9STRA8.770e-847.17Protein kinase n=1 Tax=Achlya hypogyna TaxID=12027... [more]
A0A485KZD5_9STRA1.760e-742.19Aste57867_13912 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2P5Y1_9STRA2.080e-741.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JDY4_FISSO2.870e-746.30Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A7S2RKJ1_9STRA5.270e-744.07Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3PX35_9STRA5.440e-745.76Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0ATK8_9STRA1.480e-642.37Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1W0A2X1_9STRA3.260e-641.07Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig890contigF-serratus_M_contig890:52406..53964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig890.20267.1prot_F-serratus_M_contig890.20267.1Fucus serratus malepolypeptideF-serratus_M_contig890 52410..53964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932595.1090345-UTR-F-serratus_M_contig890:52405..524091622932595.1090345-UTR-F-serratus_M_contig890:52405..52409Fucus serratus maleUTRF-serratus_M_contig890 52406..52409 +
1690964377.7316163-UTR-F-serratus_M_contig890:52405..524091690964377.7316163-UTR-F-serratus_M_contig890:52405..52409Fucus serratus maleUTRF-serratus_M_contig890 52406..52409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932595.1231492-CDS-F-serratus_M_contig890:52409..524561622932595.1231492-CDS-F-serratus_M_contig890:52409..52456Fucus serratus maleCDSF-serratus_M_contig890 52410..52456 +
1690964377.744232-CDS-F-serratus_M_contig890:52409..524561690964377.744232-CDS-F-serratus_M_contig890:52409..52456Fucus serratus maleCDSF-serratus_M_contig890 52410..52456 +
1622932595.136639-CDS-F-serratus_M_contig890:53413..534831622932595.136639-CDS-F-serratus_M_contig890:53413..53483Fucus serratus maleCDSF-serratus_M_contig890 53414..53483 +
1690964377.7537153-CDS-F-serratus_M_contig890:53413..534831690964377.7537153-CDS-F-serratus_M_contig890:53413..53483Fucus serratus maleCDSF-serratus_M_contig890 53414..53483 +
1622932595.1523185-CDS-F-serratus_M_contig890:53826..539641622932595.1523185-CDS-F-serratus_M_contig890:53826..53964Fucus serratus maleCDSF-serratus_M_contig890 53827..53964 +
1690964377.7632303-CDS-F-serratus_M_contig890:53826..539641690964377.7632303-CDS-F-serratus_M_contig890:53826..53964Fucus serratus maleCDSF-serratus_M_contig890 53827..53964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig890.20267.1

>prot_F-serratus_M_contig890.20267.1 ID=prot_F-serratus_M_contig890.20267.1|Name=mRNA_F-serratus_M_contig890.20267.1|organism=Fucus serratus male|type=polypeptide|length=85bp
MSLLMPVVIRDGHNRRRMSIHDSRRSKPSYLSPETFSTSAYDGVKVDVFS
AGAMLFIMLTGCPTFDKPWRYDQRYRLMVLEGQME
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mRNA from alignment at F-serratus_M_contig890:52406..53964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig890.20267.1 ID=mRNA_F-serratus_M_contig890.20267.1|Name=mRNA_F-serratus_M_contig890.20267.1|organism=Fucus serratus male|type=mRNA|length=1559bp|location=Sequence derived from alignment at F-serratus_M_contig890:52406..53964+ (Fucus serratus male)
CGGCATGTCCCTCCTCATGCCTGTCGTCATTCGCGACGGCCACAATCGAA
GGCAAGAGAGCGTTCCACCCTCAGGTTCTTTCTCTAGGACACCCTGCGTT
TGTTGAATTTCACCGCCCGATTGCCGTCGTCCCGTTATGTTTTCACCCCG
CGCTTGGTGTTGTGCTCTTGCTGTTCCTATTGATAGTGCCGATGAAAGGT
CGGGAAGAGCACAATAGCCTTTTTTTGCTGATCGGATTTTCGGCGGTCTG
GTGGCACGTTCGATAATGTGTCGACGTTTTGGTGTTGAATGGTTTCGACA
TAACGTCGGGTGCCTCAAAGGAACAAATGCGGGCCTCAGTTCGATCGATT
CGTTCAGTCTCGGATGCACGCTAACATGAGGTACCTGTAGACCACGAACG
GCAATATGCAAGTTCCGAGGAATCGCATCATCTGGCATCAATAGTTCCTT
TGTCCAGAGGCGATGTGACTGAAACAGAGGTCATCTGGTACTTATTTGTA
TTTATAGTACCTTTGGAGGCGATGGTGACTAAAACAAAGGCGATTTCCGT
AGCTGGTCTTATCATAGTTTATAACATGAAATGCTTCCAAACCTAGATTT
CCGCCATGGAGATTGTGGTTAGGATTTCGCATATATATTGGCGTTCCTTA
GTTGGCAGAAAAAGCTACTCAAGGTCTCTCTCAGCTGACTTCGATGTGCA
ACTGAAGTAGGGAATAGTTTCTACTCCCAAACGAGCAACTAAACCCATCT
TGGGACGGTATAAGGTGTCGTATTTCGCTTTCGGTTTCCATCTAGTAATA
GTTGCTTCTAATATATATATTATATATATATATATATATATCAAAATAGG
GGAAATATATGAGAAGCAGATAAATCGTTACCCCTCACAAGTAGAGGTCG
GCGCGAGGAACGCGGGCAGTCAAGGTGTGAAATAAAACCTTGGCGTGACA
AAATAACAAAGTTTGTTCCGGTACCCGTCTCTGACGCTCTTGCCCGTGCC
GTTTGCAGGCGCATGTCTATCCATGATAGTAGGAGATCGAAGCCATCTTA
CCTCAGCCCGGAAACGTTCTCTACATCGGTAAGCCAAAGTTTTTTCAAGC
CTTAGTTTGAAGTCGGCTGCAGCATCCATGCAAGTCACAATTACGGTATA
TCGTCATGCAAGGGAGTTACAACGGACCATGCTGCTTGACTCGAGGTTAA
AGCTGAGTAACCTCTGTGATGCTTCGTGGAAGAAATATCACATCGTATTT
CGATTTTATCTACCTCAGCATCATCCCCGAACGCGCTGTTGATTGTGATT
GTCGAGATTCAAGTTGTTTGTGTGATTCCAATGTGGGTGATTGCGACAAG
CAGGTCGCGTTTACAGTCTGACGAACAAGTGCAAGAGCGTATTTTCATCC
GAACGTTGCCCTCTTGATCAGGCGTACGACGGCGTTAAGGTGGATGTTTT
CTCAGCGGGAGCTATGCTCTTCATTATGCTCACTGGCTGTCCTACTTTCG
ACAAACCCTGGCGGTATGACCAGAGATACAGGCTAATGGTGTTGGAAGGG
CAAATGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig890:52406..53964+

>mRNA_F-serratus_M_contig890.20267.1 ID=mRNA_F-serratus_M_contig890.20267.1|Name=mRNA_F-serratus_M_contig890.20267.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig890:52406..53964+ (Fucus serratus male)
ATGTCCCTCCTCATGCCTGTCGTCATTCGCGACGGCCACAATCGAAGATG
TCCCTCCTCATGCCTGTCGTCATTCGCGACGGCCACAATCGAAGGCGCAT
GTCTATCCATGATAGTAGGAGATCGAAGCCATCTTACCTCAGCCCGGAAA
CGTTCTCTACATCGGCGCATGTCTATCCATGATAGTAGGAGATCGAAGCC
ATCTTACCTCAGCCCGGAAACGTTCTCTACATCGGCGTACGACGGCGTTA
AGGTGGATGTTTTCTCAGCGGGAGCTATGCTCTTCATTATGCTCACTGGC
TGTCCTACTTTCGACAAACCCTGGCGGTATGACCAGAGATACAGGCTAAT
GGTGTTGGAAGGGCAAATGGAAGCGTACGACGGCGTTAAGGTGGATGTTT
TCTCAGCGGGAGCTATGCTCTTCATTATGCTCACTGGCTGTCCTACTTTC
GACAAACCCTGGCGGTATGACCAGAGATACAGGCTAATGGTGTTGGAAGG
GCAAATGGAA
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