mRNA_F-serratus_M_contig1272.2027.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1272.2027.1
Unique NamemRNA_F-serratus_M_contig1272.2027.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1272.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1272contigF-serratus_M_contig1272:267236..268930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1272.2027.1prot_F-serratus_M_contig1272.2027.1Fucus serratus malepolypeptideF-serratus_M_contig1272 267236..268929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.7808561-CDS-F-serratus_M_contig1272:267235..2673151622929206.7808561-CDS-F-serratus_M_contig1272:267235..267315Fucus serratus maleCDSF-serratus_M_contig1272 267236..267315 +
1690962750.1487906-CDS-F-serratus_M_contig1272:267235..2673151690962750.1487906-CDS-F-serratus_M_contig1272:267235..267315Fucus serratus maleCDSF-serratus_M_contig1272 267236..267315 +
1622929206.7942247-CDS-F-serratus_M_contig1272:268089..2682641622929206.7942247-CDS-F-serratus_M_contig1272:268089..268264Fucus serratus maleCDSF-serratus_M_contig1272 268090..268264 +
1690962750.1573763-CDS-F-serratus_M_contig1272:268089..2682641690962750.1573763-CDS-F-serratus_M_contig1272:268089..268264Fucus serratus maleCDSF-serratus_M_contig1272 268090..268264 +
1622929206.8101737-CDS-F-serratus_M_contig1272:268737..2689291622929206.8101737-CDS-F-serratus_M_contig1272:268737..268929Fucus serratus maleCDSF-serratus_M_contig1272 268738..268929 +
1690962750.1703339-CDS-F-serratus_M_contig1272:268737..2689291690962750.1703339-CDS-F-serratus_M_contig1272:268737..268929Fucus serratus maleCDSF-serratus_M_contig1272 268738..268929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1272.2027.1

>prot_F-serratus_M_contig1272.2027.1 ID=prot_F-serratus_M_contig1272.2027.1|Name=mRNA_F-serratus_M_contig1272.2027.1|organism=Fucus serratus male|type=polypeptide|length=149bp
VSSEVKRARGRDFDSTSHNHITFNQLRSMRVIQNVLSVFTVTFLAAVNGI
DLEQVPFFESLAEGDSVLIAQHGPFNFSASCDSSAVTLDVFVEATQEDLI
FSDQDGPANLQAGDTASYLGVFTETSSGNDYADGGFVSASGYYVGWNGQ
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mRNA from alignment at F-serratus_M_contig1272:267236..268930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1272.2027.1 ID=mRNA_F-serratus_M_contig1272.2027.1|Name=mRNA_F-serratus_M_contig1272.2027.1|organism=Fucus serratus male|type=mRNA|length=1695bp|location=Sequence derived from alignment at F-serratus_M_contig1272:267236..268930+ (Fucus serratus male)
GTCTCTTCTGAAGTGAAGCGGGCACGCGGGCGTGACTTCGATAGCACCAG
CCATAATCACATCACATTCAACCAATTAAGGTGGGCCAAAGCGAGGCTTA
GGACGGGTGCTTCCTGGAGGCATCCATTGCAATCCAAAATTGAAATTGAT
GGATAGATTCGTGCATAAATTGCGTAGATTTCGAGCAAACACTTCCATTA
TACTATAGACTAGTACTCTTCAAGGCACAACAAGAAGTGTGACAAAACAA
AAAGTTAGGATTGGATGTGTTACCCAGGGCTTACAGTAGTTACAGGGTGA
TAAGTCGATACTTTAATACACTGCTGCTGTTGTTGTGCAGGCGCATGGAT
CTATGTAGCGCTATTCATAATGGTAGTGGTATACCGAAATGCTCGGGGGA
AAATCCAGGACGTTGGATGAGACTTCTCCAGCTAGTTGTCGCTTGTCTGT
TACATACCTAGCATGTGGCATATAGCTAGTTCAACGAAGTAGCTTATAGA
CTATACGTTTTTAAGTGAGGCATTAGTATATTATGCTGAAGGAGTGGCCC
GTCTAAGGAGCAAGTTACACCGGCACCACCCGTAAAGAGCTTCACCATAA
CGATGTTGCTGAGAAATCACAGCCAACGTTACCTCATGGCGTGCGGTAAT
GCTCTGGGAGATTCGCCTTCAACGCGAAAAATATAGCGCGCGGATATGAT
ATGCACACCTGCATCTCATTATCAATGCTAGATTGACCTCGATCGAGTCG
TTCGGTGGCTTCAATATCGGCAGGAACCAACTGGATACATTCCTATTCAG
ACATGTAATTCACTCTTTTTTTACCATTGTTTTGTCCCATCACATGGTGT
GCAGATCCATGCGTGTCATTCAGAATGTACTCTCCGTCTTCACGGTGACA
TTCCTCGCTGCGGTAAACGGAATCGACCTGGAACAAGTCCCTTTCTTCGA
GTCTCTAGCCGAGGGAGACAGCGTCTTGATCGCCCAGCACGGCCCTTTCA
ACTTCTCTGCTTCGTGTGATTCATCCGCTGTGAGTTATGAAGGCACCGAG
CATAGAATAAAGCAGTGTCCCATTTACGCTCTAGCACTGCGTTGCACCTC
TGTTGTAGGGATACTGTTGTTTCTAACATTTGCATCAGATTATTATGGCG
TCCTTGCACCTACGGCATTCGTGCCGACGATGTTGACGCGTCCTTATATG
ATGGAGTTGGCGATGACAAATGCCGTCTCACGTCCACTTCTTCCGAACTC
ATCAGGGTTCAAGCCGAATCTCGCATATTAGACGGGCAGCGTGGGTTAGG
CTCGGCGAAGCATGTTCTTTCCTTCTCTAAAATACCCGCACGAGGGGCCT
AAAAAACGTCTAATGCATCAAAATGCTCGTACTCGCGACTTAATATTTCC
AAGGAAAGTAAGGCTGATCAAAACTATACCTGGTATGTATGTTGACAACT
GTAACTGCGATAAAAAGCATTCAGCGCCTGCGCCTCTGGCCCCTGATCGA
AGGTGACTCTGGACGTATTCGTCGAGGCAACTCAGGAGGATTTAATTTTC
TCAGACCAGGACGGTCCCGCGAACCTCCAAGCGGGAGACACGGCATCGTA
TCTGGGGGTCTTCACTGAGACCAGTTCCGGCAATGACTATGCCGACGGCG
GATTTGTCAGCGCTTCCGGCTACTACGTGGGCTGGAACGGCCAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1272:267236..268930+

>mRNA_F-serratus_M_contig1272.2027.1 ID=mRNA_F-serratus_M_contig1272.2027.1|Name=mRNA_F-serratus_M_contig1272.2027.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig1272:267236..268930+ (Fucus serratus male)
GTCTCTTCTGAAGTGAAGCGGGCACGCGGGCGTGACTTCGATAGCACCAG
CCATAATCACATCACATTCAACCAATTAAGGTCTCTTCTGAAGTGAAGCG
GGCACGCGGGCGTGACTTCGATAGCACCAGCCATAATCACATCACATTCA
ACCAATTAAGATCCATGCGTGTCATTCAGAATGTACTCTCCGTCTTCACG
GTGACATTCCTCGCTGCGGTAAACGGAATCGACCTGGAACAAGTCCCTTT
CTTCGAGTCTCTAGCCGAGGGAGACAGCGTCTTGATCGCCCAGCACGGCC
CTTTCAACTTCTCTGCTTCGTGTGATTCATCCGCTATCCATGCGTGTCAT
TCAGAATGTACTCTCCGTCTTCACGGTGACATTCCTCGCTGCGGTAAACG
GAATCGACCTGGAACAAGTCCCTTTCTTCGAGTCTCTAGCCGAGGGAGAC
AGCGTCTTGATCGCCCAGCACGGCCCTTTCAACTTCTCTGCTTCGTGTGA
TTCATCCGCTGTGACTCTGGACGTATTCGTCGAGGCAACTCAGGAGGATT
TAATTTTCTCAGACCAGGACGGTCCCGCGAACCTCCAAGCGGGAGACACG
GCATCGTATCTGGGGGTCTTCACTGAGACCAGTTCCGGCAATGACTATGC
CGACGGCGGATTTGTCAGCGCTTCCGGCTACTACGTGGGCTGGAACGGCC
AGGTGACTCTGGACGTATTCGTCGAGGCAACTCAGGAGGATTTAATTTTC
TCAGACCAGGACGGTCCCGCGAACCTCCAAGCGGGAGACACGGCATCGTA
TCTGGGGGTCTTCACTGAGACCAGTTCCGGCAATGACTATGCCGACGGCG
GATTTGTCAGCGCTTCCGGCTACTACGTGGGCTGGAACGGCCAG
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