mRNA_F-serratus_M_contig889.20260.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig889.20260.1
Unique NamemRNA_F-serratus_M_contig889.20260.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 334 bits (857), Expect = 4.420e-106
Identity = 158/250 (63.20%), Postives = 193/250 (77.20%), Query Frame = 3 
Query:  165 SAEWNYERTATGGGEPYGPSNWFQGFPDCGGSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGT-GELLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIYGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVFLV 911
            +AEW Y RT+T G +PYGPS+W +G+PDCG  AQSPI+LAA+  T  + + ++L+F P+ C S +L F A+ERVWE+LF GC+    + F  E YNL+QIHIHSPSEH IGGS  +AEIHWVH K GT  +LLVVGVLFD ++YG+NVEI+ LWDVLDIG  +T   F T+IY ++P N VFSHY GSLTTPPC+EGV WIVM++P  +SKMQLDEFR SVALF DSKVDE GNTNRP Q LNDR +F V
Sbjct:   39 AAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 9.450e-77
Identity = 125/250 (50.00%), Postives = 164/250 (65.60%), Query Frame = 3 
Query:  165 SAEWNYERTATGGGEPYGPSNWFQGFPDCGGSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGTGE-LLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIYGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVFLV 911
            +AEW Y  T   G EPYGP +W+ G+PDC G+ Q+PIN+AA+    A   +  + F P  C S++L F ++  VW+V F GC     L +  ETYNL+Q HIHSPSEH +GG+  AAEIH VH K  T + LLVVG++F+VS+YG NVE++P+W+V+D+        F    Y L+P    F+ Y+GSLTTPPC+EGV WI+M+EP  +S  QLD +R +VAL   SKV E G TNRP Q LN RDV  V
Sbjct:   44 AAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 293
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 251 bits (642), Expect = 2.880e-74
Identity = 129/251 (51.39%), Postives = 166/251 (66.14%), Query Frame = 3 
Query:  171 EWNYERTATGGGEPYGPSNWFQGFPDCGGSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKA---GT-GELLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIYGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVFLV 911
            +W Y R +  G  PY PS+W  G+PDCGG +QSPINL+AN  T  E+T+F+L+     CAS +L F AN  VWE+ F  C   ++L+F+   Y+L+Q+HIHSPSEH + GSL  AEIH VH++    GT  ELLV+GV  D  E+G NV ++PLWDVL  G            Y LIP +  +SHY GSLTTPPCSE V W+VM+ PTVI  +QLD FR SVA   +S+VDE+ NTNRP Q +N R V++V
Sbjct:   48 DWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGV---INPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.070e-56
Identity = 95/141 (67.38%), Postives = 113/141 (80.14%), Query Frame = 3 
Query:  492 IGGSLRAAEIHWVHAKAGTGE-LLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIYGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVFLV 911
            IGGS   AEIHWVH KAGT + LLV+GVLFD ++YG+NVEI+ LWDVLDIG  +T   F T++Y ++P N VFSHY GSLTTPPC+EGV WIVM++P  + KMQLDEFR SVALF +SKVDE GNTNRP Q LN+RD+F V
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 138 bits (347), Expect = 5.660e-33
Identity = 94/255 (36.86%), Postives = 122/255 (47.84%), Query Frame = 3 
Query:  228 WFQGFPDCGGSAQSPINLAAN---THTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDG-CAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKA-GTGELLVVGVLFD-VSEYGTNVEIQPLWD---------------------VLDIGVASTSASFDTQI--YGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVF 905
            W   +PDC G  QSPIN+A +   T            F    C   DL + A+ + W V FDG C    ++T N   +NL+Q H+HS SEH IGG    AEIH+VH  A     L VVGV+    S+   N+E    W+                      +    AS+S S   Q+  Y ++P +  + +Y GSLTTPPCSE VTWIVM E   +S  QL+ FR  +       VD  GN  RP QP N R V+
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 256
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: A0A450XNX8_9GAMM (Carbonic anhydrase n=1 Tax=Candidatus Kentron sp. MB TaxID=2138164 RepID=A0A450XNX8_9GAMM)

HSP 1 Score: 134 bits (337), Expect = 9.800e-32
Identity = 90/246 (36.59%), Postives = 129/246 (52.44%), Query Frame = 3 
Query:  174 WNYERTATGGGEPYGPSNWFQGFPDCG-GSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGTGELLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDT-QIYGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVF 905
            W YE      GE +GP +W +    CG G  QSPI++   T T A S   D+Q+ P       +  + N    +  F G  ++  L  + + Y L+Q+H H+PSEH IGG L + E+H VH  A   EL V+G++  + E   N  I+ +W+ +   VA  + S +T  +  L+P +K F +Y GSLTTPPCSEGV W VM  P   S+ Q+ +F   +           G +NRP QPLN R +F
Sbjct:   32 WQYE------GE-HGPEHWGKVSAVCGSGKTQSPIDIKGQTKTGAPS--LDMQYHP----VPSINVLNNGHTIKGSFGG--EKNRLLVDGKPYKLLQLHFHTPSEHQIGGKLASMELHLVHQNADK-ELAVIGIM--IEEGKENKAIKGIWEKMPKKVAKETESHETFNVASLLPKDKTFFYYMGSLTTPPCSEGVRWFVMKTPIHFSEEQIRKFHRII-----------GVSNRPLQPLNGRTIF 248
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: G4ZXZ2_PHYSP (Alpha-carbonic anhydrase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZXZ2_PHYSP)

HSP 1 Score: 133 bits (335), Expect = 2.880e-31
Identity = 95/272 (34.93%), Postives = 129/272 (47.43%), Query Frame = 3 
Query:  108 VLLAAFLLAYDATVHVSAQSAEWNYERTATGGGEPYGPSNWFQGFPDCGGSAQSPINL--AANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGTGELLVVGVLFDVSEYG-TNVEIQPLWDVLDIGVASTSASFDTQIYGLIPPNKVFSH----YTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDV 902
            VL+A  L A   T    A SA W Y+   +       P +W + +P CGGS QSPI++  +   +  A S  F  Q T +    SD AF A      V    CA  A    N  +YN++Q H+HSPS+H + G    AE+H+VH       +LVVGV F   + G TN  +  + D LD    +++ S  T  Y  +      +H    Y GSLTTPPCSE V W V+ +P  IS   L   +  +   P   + + G   RP  PLN R V
Sbjct:   10 VLVACALSATSVTAD-GATSATWGYKHNDS---SMANPEHWAEQYPSCGGSKQSPIDIEMSGGCNAEARSLTFSGQCTDYNLTQSDEAFKA-----AVNGGSCAVSA----NNASYNMVQFHLHSPSDHTLSGEHLDAEVHFVHNNTNGSAILVVGVFFKAVDGGETNPWVASVLDALDTVSMNSTVSMSTTSYADVVTTAADAHGVFNYAGSLTTPPCSEIVDWWVVKQPVNISTTDLARLQSQLKEIP---ITDDGKNARPVHPLNGRVV 265
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: UPI0008333ACF (carbonic anhydrase n=2 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI0008333ACF)

HSP 1 Score: 131 bits (329), Expect = 1.400e-30
Identity = 97/268 (36.19%), Postives = 134/268 (50.00%), Query Frame = 3 
Query:  129 LAYDATVHVSAQSAE---WNYERTATGGGEPYGPSNWFQGFPD---CG-GSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGTGELLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIY--GLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVF 905
            +AY  +   SA + +   W Y   A+       P +W +  PD   C  G  Q+PINL   T T AE+  F+ + TP       L  I N    +V +   A  +++TF  E++NL+Q H H PSEH I G     EIH VH ++  G+L VVG+      +  N  +Q +WDV+ I       + +T I    L+P ++ F  Y GSLTTPPCSE V W VM +P   SK Q+ +F    ALFP        + +RP QPLN R V 
Sbjct:   19 IAYSRSFPASATTLDQIHWGYIGAAS-------PEHWGELSPDFQLCQTGRQQTPINLEDTTVTEAEALIFNYRPTP-------LKIIHNGHSIQVNY---APGSAMTFKGESFNLVQFHFHHPSEHQITGQPFDLEIHLVH-RSQAGKLAVVGIFAQTGTF--NPVLQSIWDVMPIQPQPEQITANTSINVSQLLPSDRSFYEYRGSLTTPPCSEDVLWFVMQQPIEASKQQIQQF---AALFP--------HNSRPLQPLNSRTVL 255
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: A0A7S4D4V5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4V5_HETAK)

HSP 1 Score: 130 bits (326), Expect = 2.180e-30
Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 3 
Query:  195 TGGGEPYGPSNWFQGFPDCGGSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIA-NERVWEVLFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAGTGELLVVGVLFDVSEYGTNVEIQPLWDVL--DIGVASTSASFDTQI---YGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNE 776
            +GG E   P NW+    DC G +QSPIN+   + +   S Q  L      C   DL ++  N   W+V    C    + T+N   Y L+Q H HSPSE+ IGG    AE+H VHA A +  LLV+GV+FDV +YG N   +  W+    D+    +  S  + +     ++P +  + H+ GSLTTPPCSEGVTWI+M++
Sbjct:   45 SGGEEACSPENWYAYAEDCAGESQSPINVVQASPSTTLS-QLVLNKNNEDC---DLLYLVDNYHTWKVDMSECDGSYTTTWNDVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADADSN-LLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 239
[Close]
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 132 bits (331), Expect = 5.190e-30
Identity = 102/284 (35.92%), Postives = 132/284 (46.48%), Query Frame = 3 
Query:  174 WNYERTATGGGEPYGPSNWFQGFPDCGGSAQSPINLAANTHTPAESTQFDLQFTPHT---------CASSDLAFIANERVWEVLFDG-CAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKA-GTGELLVVGVLFD-VSEYGTNVEIQPLWDVL----------------DIGVA----------STSASFDTQI--YGLIPPNKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSKVDEQGNTNRPYQPLNDRDVF 905
            +NYE      G+   P  W   +PDC G  QSPIN+A +  T       D    P T         C   DL + A+ + W V FDG C    ++T N   +NL+Q H+HS SEH IGG    AEIH+VH  A     L VVGV+    S+   N+E     + +                D  +A          STS S   Q+  Y ++P +  + +Y GSLTTPPCSE VTWIVM E   +S  QL+ FR  +       VD  GN  RP QP N R V+
Sbjct:   61 YNYECNYEEHGQ-VAPDMWGYLYPDCLGVRQSPINIARDIVTT------DCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 337
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig889.20260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA4.420e-10663.20Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI9.450e-7750.00Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA2.880e-7451.39Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE2.070e-5667.38Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
H6WB77_VAULI5.660e-3336.86Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A450XNX8_9GAMM9.800e-3236.59Carbonic anhydrase n=1 Tax=Candidatus Kentron sp. ... [more]
G4ZXZ2_PHYSP2.880e-3134.93Alpha-carbonic anhydrase domain-containing protein... [more]
UPI0008333ACF1.400e-3036.19carbonic anhydrase n=2 Tax=unclassified Anabaena T... [more]
A0A7S4D4V5_HETAK2.180e-3038.50Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
H6WB76_VAULI5.190e-3035.92Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig889contigF-serratus_M_contig889:75300..81372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue1.1e-67
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons9
Model size2206
Cds size825
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.768662-UTR-F-serratus_M_contig889:75299..765851622932582.768662-UTR-F-serratus_M_contig889:75299..76585Fucus serratus maleUTRF-serratus_M_contig889 75300..76585 -
1690964377.172155-UTR-F-serratus_M_contig889:75299..765851690964377.172155-UTR-F-serratus_M_contig889:75299..76585Fucus serratus maleUTRF-serratus_M_contig889 75300..76585 -
1622932582.9728765-UTR-F-serratus_M_contig889:81277..813721622932582.9728765-UTR-F-serratus_M_contig889:81277..81372Fucus serratus maleUTRF-serratus_M_contig889 81278..81372 -
1690964377.2794707-UTR-F-serratus_M_contig889:81277..813721690964377.2794707-UTR-F-serratus_M_contig889:81277..81372Fucus serratus maleUTRF-serratus_M_contig889 81278..81372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.7847927-CDS-F-serratus_M_contig889:76585..766601622932582.7847927-CDS-F-serratus_M_contig889:76585..76660Fucus serratus maleCDSF-serratus_M_contig889 76586..76660 -
1690964377.1842697-CDS-F-serratus_M_contig889:76585..766601690964377.1842697-CDS-F-serratus_M_contig889:76585..76660Fucus serratus maleCDSF-serratus_M_contig889 76586..76660 -
1622932582.8052025-CDS-F-serratus_M_contig889:76891..769871622932582.8052025-CDS-F-serratus_M_contig889:76891..76987Fucus serratus maleCDSF-serratus_M_contig889 76892..76987 -
1690964377.193567-CDS-F-serratus_M_contig889:76891..769871690964377.193567-CDS-F-serratus_M_contig889:76891..76987Fucus serratus maleCDSF-serratus_M_contig889 76892..76987 -
1622932582.8258147-CDS-F-serratus_M_contig889:77260..774011622932582.8258147-CDS-F-serratus_M_contig889:77260..77401Fucus serratus maleCDSF-serratus_M_contig889 77261..77401 -
1690964377.2036588-CDS-F-serratus_M_contig889:77260..774011690964377.2036588-CDS-F-serratus_M_contig889:77260..77401Fucus serratus maleCDSF-serratus_M_contig889 77261..77401 -
1622932582.8460658-CDS-F-serratus_M_contig889:77704..778211622932582.8460658-CDS-F-serratus_M_contig889:77704..77821Fucus serratus maleCDSF-serratus_M_contig889 77705..77821 -
1690964377.2142007-CDS-F-serratus_M_contig889:77704..778211690964377.2142007-CDS-F-serratus_M_contig889:77704..77821Fucus serratus maleCDSF-serratus_M_contig889 77705..77821 -
1622932582.8782837-CDS-F-serratus_M_contig889:78045..781441622932582.8782837-CDS-F-serratus_M_contig889:78045..78144Fucus serratus maleCDSF-serratus_M_contig889 78046..78144 -
1690964377.2250285-CDS-F-serratus_M_contig889:78045..781441690964377.2250285-CDS-F-serratus_M_contig889:78045..78144Fucus serratus maleCDSF-serratus_M_contig889 78046..78144 -
1622932582.8948731-CDS-F-serratus_M_contig889:78604..786881622932582.8948731-CDS-F-serratus_M_contig889:78604..78688Fucus serratus maleCDSF-serratus_M_contig889 78605..78688 -
1690964377.2341576-CDS-F-serratus_M_contig889:78604..786881690964377.2341576-CDS-F-serratus_M_contig889:78604..78688Fucus serratus maleCDSF-serratus_M_contig889 78605..78688 -
1622932582.9130802-CDS-F-serratus_M_contig889:78867..789521622932582.9130802-CDS-F-serratus_M_contig889:78867..78952Fucus serratus maleCDSF-serratus_M_contig889 78868..78952 -
1690964377.2445827-CDS-F-serratus_M_contig889:78867..789521690964377.2445827-CDS-F-serratus_M_contig889:78867..78952Fucus serratus maleCDSF-serratus_M_contig889 78868..78952 -
1622932582.9330745-CDS-F-serratus_M_contig889:79510..795661622932582.9330745-CDS-F-serratus_M_contig889:79510..79566Fucus serratus maleCDSF-serratus_M_contig889 79511..79566 -
1690964377.258705-CDS-F-serratus_M_contig889:79510..795661690964377.258705-CDS-F-serratus_M_contig889:79510..79566Fucus serratus maleCDSF-serratus_M_contig889 79511..79566 -
1622932582.9577014-CDS-F-serratus_M_contig889:81205..812771622932582.9577014-CDS-F-serratus_M_contig889:81205..81277Fucus serratus maleCDSF-serratus_M_contig889 81206..81277 -
1690964377.2708952-CDS-F-serratus_M_contig889:81205..812771690964377.2708952-CDS-F-serratus_M_contig889:81205..81277Fucus serratus maleCDSF-serratus_M_contig889 81206..81277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig889.20260.1prot_F-serratus_M_contig889.20260.1Fucus serratus malepolypeptideF-serratus_M_contig889 76586..81277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig889.20260.1

>prot_F-serratus_M_contig889.20260.1 ID=prot_F-serratus_M_contig889.20260.1|Name=mRNA_F-serratus_M_contig889.20260.1|organism=Fucus serratus male|type=polypeptide|length=275bp
MSRFVLLAAFLLAYDATVHVSAQSAEWNYERTATGGGEPYGPSNWFQGFP
DCGGSAQSPINLAANTHTPAESTQFDLQFTPHTCASSDLAFIANERVWEV
LFDGCAQQASLTFNAETYNLIQIHIHSPSEHAIGGSLRAAEIHWVHAKAG
TGELLVVGVLFDVSEYGTNVEIQPLWDVLDIGVASTSASFDTQIYGLIPP
NKVFSHYTGSLTTPPCSEGVTWIVMNEPTVISKMQLDEFRVSVALFPDSK
VDEQGNTNRPYQPLNDRDVFLVKA*
back to top

mRNA from alignment at F-serratus_M_contig889:75300..81372-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig889.20260.1 ID=mRNA_F-serratus_M_contig889.20260.1|Name=mRNA_F-serratus_M_contig889.20260.1|organism=Fucus serratus male|type=mRNA|length=6073bp|location=Sequence derived from alignment at F-serratus_M_contig889:75300..81372- (Fucus serratus male)
TCTCCATCGAAGACAGCTCAACTCCGTGCAGTTTCAACTCCAATCAGTGC
CACTACTACTGAAGTCGGGTCTACCGCTTACTAGGCTTACTGATCATGTC
GCGATTCGTGCTGCTGGCGGCTTTCCTTCTGGCATACGACGCCACCGTTC
ACGTCTCTGCACAATCGGTAAGTAATCGAGTGCAGTTCGGACAAACAGTC
CCGAGAAAGGCTTCGTTTTCCATATCATTTGATGCCATTTTCGTTTCCCC
GTGCGTACCAGTAATATTTACTGCTCGCACTTTTTATCAATTGCCTCTTC
ATCGTGCTTTATCAATAGCTCAAATCCAAACAGGTGAGCCGACTTGATTG
ATTCCTTTAGTGTAGCGAACCATTTATCGATATCCTGGAGGTACGACAAT
CATATTGGGAGGGGGAATTGTGCTGCCCTCTCGCCATGTGTGCTTTATTA
TGCATCAGGTATCGAATAACAATATTTAGTACGTATGTAGTAGTGAAGTA
TGCCACGTAATAGATGTTCCCACTTCCTTCTCTCTACAACAACAACAAAT
AAATTCAAATACCATAGCCTTTCACAGTTTGCCGGTTTACGTCTCATAAC
CATCAGTATAAGAACCTATAGCGTTTGAACAGTTTTTTTCGGTGACTGCT
GCCTTACGCTATACTAGAGGTAACAAGCCAAAGTTATCGTCAAGGCAATC
GCATCTATCTTCCGTTAATGGCAATACTACTACTGCACTATAGATACTCT
TCTAGTAGTTCCAACGTTCGTATACAAAATGCCTTTGTTGTCCAACGTTG
TATACAAAATGCCTTTGTTGGTCGTCAGCGGTCGTAGCGGGCGTCATAGG
ACACAATTCAGGCGCGTGTTTTGTCGCTGGAAGAATGAATGACGTATAGA
ATACAGGTACTTACAACAGCGTTAAACAATCGTTTCCACGCCATGTCAGG
ATGCTTGACCTTTCCGTAGAAGGCGGCTCCTATCGTGGTACAATGTTCTC
TGCCCTACTATGCATACAGAGTCCCATCGTGGCCATGGGGTTATGATACT
CGCAGCCCAAGCACAGACAACACGAATCATTCTTGGGTATACTACTTCCA
GCAGAAGACTCTCCTTATGACGTCCCCGCTTCGCTCGGAGAAGAAATATT
GCACAGACCTCAGTAGGAGATTGCAAGAGGCCTCAACTAAAGTACCTCCC
AACCTGGTAGTTATACCACCCGCTTCACTATAGAGACTATCAGGTGTGAG
TATATCAACTTATTATGTTATACAGCATAGCATGTTGCGTCTCGCTCCCA
TATGAAGACGGAGTACATTATCAAGATTGTCTCTGCACGTAGCTTACTCG
AAGCAATCATTCATAGACTAGCGATGTGGACCTCAGTCTGTCTTAGGTCG
CCGATAATATTTATTCGTGAACTGCACCTTGTTTTCCCTCCCGTGTGATA
TACTTGCGGTCCCGTGTCTCTTCCAATCGTTCTCGGCGCACGGCGATGAT
GGTGGCGGTTGCGACACTCCTGACTTTCTGTTGCTGGATCGTTATCGTCA
TGGTCGGGAAAATCCACTTCGTGGCTATTGGATGACAACGATTGTGAGTA
CCGTATTTGGCAGGTTTTTGCGTTGGGTGGTGGAGCCTAGGCGAATCTAC
TGCATCCAGATGCAAATCACGGCGACACTCGTTTCTGTTTCGGGAGTGGG
GCGACAAACGATCTGTCGATTGAAACTGAATGTGTCCTCTCTTCCTTCAA
CCATATACCGCCATATGTTTCTAAATCAAGCTGCCCCCACTGGAACAACC
GGAAAGGCTGAGTGGAACTACGAACGAACAGCTACAGGCGGGGGAGAGCC
TTACGGACCCAGGTACGACCTTCCTTGCAGTGTTTTGTCAACCCACGAGA
AGAGCAGTGCCACATAAATAGTCTTTCTTTTTTCTATAGTAAAAGTAACA
GAGACTGCGGCGTCGTGATGCCAGATGTGTGTACATCAAATTCCTTTGAT
CGAGTGAGGGGTTCAACGATTGGGAGGGCGGGGATACGACGATTTAGTCC
CCGGAGAGGTCACCAAAACAGCCCCTTCCGGGGATTAGGCTTATGATCCT
CTACATGGGCGGCAAGCTTGCCCCGAACTTATCGCATTTGACCAGGGGGT
TGGTCATATATGTTCCCGGTGGGGGCTATTTTCGTGTCGTTTCCTAACAA
AACGGGGACAAATATGTTACACCCCCGCCCCCCTCCGATCGTTGACCTGA
TCGAGTGGGGGTTGCTCTTCCGCGGGCAAGGTTGGACACACAGTAGATGC
TGTATTAGTGTGTTCGTCCCACCTACAAGTCTGTACTTTCAGGTATCAAG
AGACTACCGTATTGCGTAGTATGGGTGTGCACTTGACCTGACGTATCGAT
CGCATGTACGCTGTCCGCAGCAATTGGTTCCAGGGCTTCCCCGACTGCGG
TGGCAGTGCTCAGAGCCCCATCAATCTCGCGGCTAACACGCATACGCCAG
CAGAGGTGAGAAAGATCCTATCCCAATTCAACTTACGCTAAAAAACTGCA
CACCGATCGACTGCACCATCGTCAGCCGTAGACGATGGCCTCGTTGCAGG
CAGAAACAAAGCTGACCTCCTTCCTTGACCTTCCCTGTTGCTTGTCCCCT
ATACTGGTGCGTACGAACATATATCCGAGAGCAGTCGACCCAGTTTGACC
TCCAGTTCACCCCTCACACGTGTGCATCGAGCGACCTGGCCTTCATCGCC
AACGAGCGCGTGTGGGAGGTGAGGGATATATGCTAAACTACTCCAGTGTA
GAGTCATGCAGTCGCGTCGCTTTGATGGAGTGTCGTTACGAAACAACCCA
GGTATGCAATAAAATGCTGTTTTTCAGGTGATGAGGCATCATCCGCACGG
CAATCACCTTCCTAGAGCTTTACTTCAAAGTTACCCCTTCAAAACAGCGT
CTGCAGATTCCCCCTGTCTACGACGAGCGGAACATGCGACCTCTTGAGTG
CTCGAATTACTTCACCGGAAGCATAGCGTGATTCGTAGGACATCTCCATA
CAGGGAAGCTCAAGGAGACAAAACACACGGATTGATCGTTACGCGATTCG
GAGAACAACGACGCTAACATTGAGCAATAACCTTTTGAGCGTGTTGTGTA
ACGTGTGATCTCACGAGCAACGCATTAACAATGTATGTTCTTTTTCTCCT
CTGACGAAACATGATGATTCCGACGCAGGTCCTCTTCGACGGATGTGCGC
AGCAGGCCTCTCTAACCTTCAACGCAGAAACTTACAATCTGATTCAGATC
CATATCCATTCCCCCTCTGAGCACGCGGTAAGAAAACAAGTGGACGTTGG
GGCCATCGATTTGCGCAGAGAAATACGCGCCGCGGGTAGCTCTGACGAAG
CGCACCCGTAAAGCCATGTCTCTGAAGCACAAATCTTGTCGCGCGCTCGA
AGTCGTAAGCCTGAATTTCCTTATGCCCACAACCCATCATCCCCTCACTC
ATAACGATGGATCTACATTGTTGTCTTCTCCGTGGTTCTCCTCCATGGCA
GATTGGAGGGTCCCTTCGCGCGGCCGAGATACACTGGGTGCACGCCAAGG
CAGGGACGGGCGAACTTCTTGTGGTTGGCGTACTCTTTGACGTCAGCGAG
TACGGTACCAACGTTGAGGTCCGTCCGTATGAAAGACGAACTAAAATTGT
GTCACCGTCCTTCCCCGCGGGCTTAACACAGTCTGAGCTGTCGAATGCGG
TCGCCAGATTGCCTGTCGTTTGGGCCGAGACAAGGTCTGCACGTAGAAAG
GATTCGTTGTGACGATCGCCCGAGCCCATCGTTTTGATATCTTACAAGAA
ATATTTGTTGTGATGTGTTGTGTTTGATACACATTATTACTCTTATTAAC
CTCAAAGTCGCAGTTTTCGGCTTCCGGATCCTCTCTCTCCATGCCCTGCC
AATGCGCACGCGATACTGCAGATTCAGCCTCTTTGGGACGTTCTGGACAT
CGGTGTGGCCTCCACAAGTGCATCGTTCGACACGCAGATTTACGGCCTGA
TCCCACCCAACAAAGTGTTTTCGCACTACACGGGATCTCTAACAACGCCC
CCTTGTTCGGAGGTGAGATAGGTAGCTTCAATAGCGCGAAAACCAGAAAT
GGAGATCGGATAGGCTTCGCTACTCGTGTCCGTTTTGGAAGCCTTTTTTG
TTATACAGTACTGAGCACTACTTTTCTTTTTGTGCCACAGAAGCTTCCTA
AATATTCGCGGGGGCTGTGTGTAGCCTGCATCCATTAATATGTTTGTTTT
TTTCCCGAACATATACATATGAAACAGCCAGAAAAACTCCAGTTCTAACC
TATGCCTTGCGACCGATCGTCATTGAACGCTACAGGGCGTCACGTGGATC
GTCATGAACGAGCCTACAGTCATTAGCAAGATGCAGCTGGACGAGTTTCG
CGTTTCGGTCGCGCTGTTCCCGGACTCCAAGGTGTATTTCGGGATGGGGA
TAGCGGCGATATCATTATGGTTTTGATATATATGTACCTAAAGTTCATGG
GTGTTCTACGAGGTGTAACCCGTAACGCCCCGTCGCCCTCGATGATAACC
TGTTATTTTGGGTTGACCATATCTCATGTTGGTGTTGGATATCAACTACC
AGGCGCACATTCCTAATCCACGCCCTCCCATCCCTTCGCTTGAACGTTAC
GGCCGCAATAAGGTCGACGAGCAAGGCAACACCAACCGTCCATACCAGCC
ACTGAACGACCGTGACGTCTTTCTCGTGAAGGCCTAAGAGTACGCCCTGC
ACGCTCTGGAACTTGAGTGAATCGTCCCTGGCATCCTCATCGAGGTAGAA
ATGTTTGGACGAAGGCTTTTGCCGGTGACCTAGATAAGGGATCGCCATCG
GTTCGAAATGCTTGTTTTGTCGTCACTGTACGAAATACTCGGAGTATAGA
GCTAGCTCTATACCTTTAGCGCTGGCGGTATCTCAAAGTCGACGAGGAAC
GGGAAGTTGCCATACAACGGTATCATCGCCCGTAATACGATAACTTGAAG
GGGAAAGTAAGCTCAGTTGTAGCCGCTAAATTGGCATGGCGCTTGAGGCA
AGCCGTACGAGTACATCGCTATAGTTACGCTGGCAGTGTTTATCATCGAT
ATTGAGGACTAGTTTCGTATCATATGTGTTTGATTACTTATTTTAAAACA
GCCAGGATCAAGGCTTATTTCGGGGTGAGGAGAAACCAGCCGTTTGAATA
GACCACTGAACAAAGGCAGGAATAACGTGTAGTACTCAGTGTAAGGGTTT
CACCCACGTAACGGCCGATCCTTTTATAGTGTATTCGTCGCGTTTGGCTG
GCCGTCCGCGCAAAGTATATCATGGTCGTGGTACCCAAACAACGACTACT
GCGGTAAGCATAAAGCTAGAAGAAAGAGTGCCTGCGTACCCTCCGTTTTG
GTGGTGTATTCGTACTATCCAGATCGTCAAGCTGGAAGGCGTCAACTGTC
CGTTTCAGTGGCTGACTAGCAGTGATGATGGACGGGCGTAGAGGTACAGC
GTGGAAGCTTAGACAGGCCACGTAGCCTATCGTGTAAGTTTACCATAGAA
TGATCGCCCCTCAGTATATAAGGGCATTAAGGTTGTTCTGTTTTCCGCGG
ATGTACGGTCGCCCCGGTACCCGATTCAGTTGTCAGCGAAGTTCGATCAC
TCTGCCTGGCGTGAAGACTTGCCACAAGTATTCCGTCTCTGCTGGACTTC
AGCATAAGTTGTATACTAAACTACTGGAGTAGTTCTGGGTGTCACGTTAG
AGTACGCATGTAAGGAGTCAATGTGTTTGTTTGTAGACAGCCCTTGGTTG
GAATGATATTGTTGAAGTGCGCCAACTGGTGTTATGTGTTCGGACTGAAG
CCACAATGAGGTCTGAGTCTCTAGGCCTCGAGATAAGAAGAGATTGAACG
ACCAGAGCTACCGCCGCCTCAATGCCAAGCTTACGGTATGTCATATCACT
GTGAGTACCAAAATACTTATTTACCAGCGGCCTAATAATAGTATTATATT
CGTATTTATAACAGCGAAACCAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig889:75300..81372-

>mRNA_F-serratus_M_contig889.20260.1 ID=mRNA_F-serratus_M_contig889.20260.1|Name=mRNA_F-serratus_M_contig889.20260.1|organism=Fucus serratus male|type=CDS|length=1650bp|location=Sequence derived from alignment at F-serratus_M_contig889:75300..81372- (Fucus serratus male)
ATGTCGCGATTCGTGCTGCTGGCGGCTTTCCTTCTGGCATACGACGCCAC
CGTTCACGTCTCTGCACAATCGATGTCGCGATTCGTGCTGCTGGCGGCTT
TCCTTCTGGCATACGACGCCACCGTTCACGTCTCTGCACAATCGGCTGAG
TGGAACTACGAACGAACAGCTACAGGCGGGGGAGAGCCTTACGGACCCAG
GCTGAGTGGAACTACGAACGAACAGCTACAGGCGGGGGAGAGCCTTACGG
ACCCAGCAATTGGTTCCAGGGCTTCCCCGACTGCGGTGGCAGTGCTCAGA
GCCCCATCAATCTCGCGGCTAACACGCATACGCCAGCAGAGCAATTGGTT
CCAGGGCTTCCCCGACTGCGGTGGCAGTGCTCAGAGCCCCATCAATCTCG
CGGCTAACACGCATACGCCAGCAGAGTCGACCCAGTTTGACCTCCAGTTC
ACCCCTCACACGTGTGCATCGAGCGACCTGGCCTTCATCGCCAACGAGCG
CGTGTGGGAGTCGACCCAGTTTGACCTCCAGTTCACCCCTCACACGTGTG
CATCGAGCGACCTGGCCTTCATCGCCAACGAGCGCGTGTGGGAGGTCCTC
TTCGACGGATGTGCGCAGCAGGCCTCTCTAACCTTCAACGCAGAAACTTA
CAATCTGATTCAGATCCATATCCATTCCCCCTCTGAGCACGCGGTCCTCT
TCGACGGATGTGCGCAGCAGGCCTCTCTAACCTTCAACGCAGAAACTTAC
AATCTGATTCAGATCCATATCCATTCCCCCTCTGAGCACGCGATTGGAGG
GTCCCTTCGCGCGGCCGAGATACACTGGGTGCACGCCAAGGCAGGGACGG
GCGAACTTCTTGTGGTTGGCGTACTCTTTGACGTCAGCGAGTACGGTACC
AACGTTGAGATTGGAGGGTCCCTTCGCGCGGCCGAGATACACTGGGTGCA
CGCCAAGGCAGGGACGGGCGAACTTCTTGTGGTTGGCGTACTCTTTGACG
TCAGCGAGTACGGTACCAACGTTGAGATTCAGCCTCTTTGGGACGTTCTG
GACATCGGTGTGGCCTCCACAAGTGCATCGTTCGACACGCAGATTTACGG
CCTGATCCCACCCAACAAAGTGTTTTCGCACTACACGGGATCTCTAACAA
CGCCCCCTTGTTCGGAGATTCAGCCTCTTTGGGACGTTCTGGACATCGGT
GTGGCCTCCACAAGTGCATCGTTCGACACGCAGATTTACGGCCTGATCCC
ACCCAACAAAGTGTTTTCGCACTACACGGGATCTCTAACAACGCCCCCTT
GTTCGGAGGGCGTCACGTGGATCGTCATGAACGAGCCTACAGTCATTAGC
AAGATGCAGCTGGACGAGTTTCGCGTTTCGGTCGCGCTGTTCCCGGACTC
CAAGGGCGTCACGTGGATCGTCATGAACGAGCCTACAGTCATTAGCAAGA
TGCAGCTGGACGAGTTTCGCGTTTCGGTCGCGCTGTTCCCGGACTCCAAG
GTCGACGAGCAAGGCAACACCAACCGTCCATACCAGCCACTGAACGACCG
TGACGTCTTTCTCGTGAAGGCCTAAGTCGACGAGCAAGGCAACACCAACC
GTCCATACCAGCCACTGAACGACCGTGACGTCTTTCTCGTGAAGGCCTAA
back to top