mRNA_F-serratus_M_contig888.20255.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig888.20255.1
Unique NamemRNA_F-serratus_M_contig888.20255.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.480e-27
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            HHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA N+VY+NVNHGIIA
Sbjct:  204 HHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIA 259
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.200e-27
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            HH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA NEVY+NVNHGIIA
Sbjct:  644 HHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIA 699
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.450e-23
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            HHM+YGMYSYGHQGGVWT++ MHDN+ YGFDPHDDSDYLTI NN V++N NHGIIA
Sbjct:  287 HHMWYGMYSYGHQGGVWTDSLMHDNYVYGFDPHDDSDYLTIRNNTVWNNKNHGIIA 342
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.610e-22
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIA 127
            HHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIA
Sbjct:  172 HHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIA 213
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.730e-20
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMH---DNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            HHM+YGMYSYGHQGGVWT++ MH   DN+ YGFDPHDDSDYLTI NN V++N  HGIIA
Sbjct:  352 HHMWYGMYSYGHQGGVWTDSLMHGEDDNYVYGFDPHDDSDYLTIRNNTVWNNKKHGIIA 410
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.080e-20
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:    8 MYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            M+YG YSYGH GGVWT+N MHDNH YGFDPHDDSDYLTI+ N  Y+N NHGIIA
Sbjct:  575 MWYGHYSYGHLGGVWTDNLMHDNHVYGFDPHDDSDYLTISGNTCYNNGNHGIIA 628
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:    8 MYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            MYYGMYSYGHQGGVWT+N M DN  YGFDPHDDSD LTIA N VY N NHGIIA
Sbjct:  610 MYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIA 663
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.440e-19
Identity = 43/60 (71.67%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT------------IANNEVYD 145
            HH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT            I NNEVYD
Sbjct:  281 HHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD 340
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.180e-19
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:    8 MYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+NN VY N NHGIIA
Sbjct:  394 MYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIA 447
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BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 87.0 bits (214), Expect = 1.170e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:    2 HHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIA 169
            HH Y+G+Y+YGH+ G W  NKMH N +YGFDPHDDSD+LTI +NEVY+N NHGIIA
Sbjct:  254 HHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIA 309
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig888.20255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR8_ECTSI1.480e-2789.29Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI5.200e-2791.07Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FWW1_ECTSI3.450e-2380.36Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FIU4_ECTSI9.610e-2297.62Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF4_9PHAE1.730e-2074.58MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G257_ECTSI4.080e-2077.78Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI1.420e-1981.48Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LRM4_ECTSI3.440e-1971.67Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7G8D9_ECTSI9.180e-1979.63Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A8CEP1_SACJA1.170e-1869.64Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig888contigF-serratus_M_contig888:183989..184376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue7.8e-21
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size169
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig888.20255.1prot_F-serratus_M_contig888.20255.1Fucus serratus malepolypeptideF-serratus_M_contig888 183996..184376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.3908756-UTR-F-serratus_M_contig888:183988..1839951622932582.3908756-UTR-F-serratus_M_contig888:183988..183995Fucus serratus maleUTRF-serratus_M_contig888 183989..183995 +
1690964377.0096204-UTR-F-serratus_M_contig888:183988..1839951690964377.0096204-UTR-F-serratus_M_contig888:183988..183995Fucus serratus maleUTRF-serratus_M_contig888 183989..183995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.4103808-CDS-F-serratus_M_contig888:183995..1840281622932582.4103808-CDS-F-serratus_M_contig888:183995..184028Fucus serratus maleCDSF-serratus_M_contig888 183996..184028 +
1690964377.0235312-CDS-F-serratus_M_contig888:183995..1840281690964377.0235312-CDS-F-serratus_M_contig888:183995..184028Fucus serratus maleCDSF-serratus_M_contig888 183996..184028 +
1622932582.4298673-CDS-F-serratus_M_contig888:184247..1843761622932582.4298673-CDS-F-serratus_M_contig888:184247..184376Fucus serratus maleCDSF-serratus_M_contig888 184248..184376 +
1690964377.0341706-CDS-F-serratus_M_contig888:184247..1843761690964377.0341706-CDS-F-serratus_M_contig888:184247..184376Fucus serratus maleCDSF-serratus_M_contig888 184248..184376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig888.20255.1

>prot_F-serratus_M_contig888.20255.1 ID=prot_F-serratus_M_contig888.20255.1|Name=mRNA_F-serratus_M_contig888.20255.1|organism=Fucus serratus male|type=polypeptide|length=54bp
MYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYDNVNH
GIIA
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mRNA from alignment at F-serratus_M_contig888:183989..184376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig888.20255.1 ID=mRNA_F-serratus_M_contig888.20255.1|Name=mRNA_F-serratus_M_contig888.20255.1|organism=Fucus serratus male|type=mRNA|length=388bp|location=Sequence derived from alignment at F-serratus_M_contig888:183989..184376+ (Fucus serratus male)
TCACCACATGTACTACGGAATGTATTCCTACGGCCACCAGGTGACCAAGT
AGATATAGCGATATTCCCGTCGATGTCATGAGAGCAATTTCGGTGGTATG
TAATGCTTCACTTGGCTTGTGTTTGTCCACCGCACGTAAAATAGAATACT
ATTAATAGTGTGTGCATGACCCATCCACGTGCGCACCAATCATGACGATG
TACGTATATGCCTCCAACGCGGGCACATCGTTTCCTCATTTGTTTCCCTG
ATATGGCAGGGCGGCGTGTGGACAAACAACAAGATGCACGACAACCACCA
GTATGGTTTCGACCCCCACGATGACTCAGACTACCTCACCATCGCCAACA
ACGAGGTCTACGACAACGTGAACCATGGTATCATCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig888:183989..184376+

>mRNA_F-serratus_M_contig888.20255.1 ID=mRNA_F-serratus_M_contig888.20255.1|Name=mRNA_F-serratus_M_contig888.20255.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig888:183989..184376+ (Fucus serratus male)
ATGTACTACGGAATGTATTCCTACGGCCACCAGATGTACTACGGAATGTA
TTCCTACGGCCACCAGGGCGGCGTGTGGACAAACAACAAGATGCACGACA
ACCACCAGTATGGTTTCGACCCCCACGATGACTCAGACTACCTCACCATC
GCCAACAACGAGGTCTACGACAACGTGAACCATGGTATCATCGCGGGCGG
CGTGTGGACAAACAACAAGATGCACGACAACCACCAGTATGGTTTCGACC
CCCACGATGACTCAGACTACCTCACCATCGCCAACAACGAGGTCTACGAC
AACGTGAACCATGGTATCATCGCG
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