prot_F-serratus_M_contig887.20246.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig887.20246.1
Unique Nameprot_F-serratus_M_contig887.20246.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length512
Homology
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BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Match: D7FVG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.530e-13
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 0 
Query:  463 KAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRNPKSFEGWLERL 511
            KA++YSLEKRWKPRVA IR +GVTPCF+DHW+ ++NR+P  F+ WL  L
Sbjct:  603 KALLYSLEKRWKPRVARIRAKGVTPCFHDHWKPIANRSPAKFDEWLTTL 651
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BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Match: A0A6H5JDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.060e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:  461 NAKAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRNPKSFEGWLE 509
            N+  ++YSL+KRW+PRVA +R   V P F+ HWR ++ R+ +SF  WLE
Sbjct:  558 NSSLLMYSLDKRWRPRVAHMRSLRVKPVFSAHWRPMATRDDESFGAWLE 606
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVG5_ECTSI6.530e-1365.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDC9_9PHAE3.060e-648.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 272..303
e-value: 2.2
score: 17.3
coord: 381..413
e-value: 0.04
score: 23.1
coord: 344..376
e-value: 7.0E-5
score: 32.2
coord: 235..267
e-value: 0.013
score: 24.7
coord: 418..450
e-value: 57.0
score: 12.6
coord: 161..193
e-value: 0.63
score: 19.1
coord: 308..339
e-value: 16.0
score: 14.5
coord: 124..156
e-value: 1.9
score: 17.5
coord: 455..486
e-value: 76.0
score: 12.2
coord: 198..230
e-value: 8.7E-4
score: 28.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 335..486
e-value: 5.6E-23
score: 81.4
coord: 120..361
e-value: 8.9E-36
score: 123.4
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 97..249
e-value: 3.4E-23
score: 84.2
coord: 353..505
e-value: 5.1E-21
score: 77.0
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 218..265
coord: 102..182
coord: 264..480
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 175..223
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 175..223
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 218..265
coord: 102..182
coord: 264..480
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..511
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.597

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig887contigF-serratus_M_contig887:320947..322482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig887.20246.1mRNA_F-serratus_M_contig887.20246.1Fucus serratus malemRNAF-serratus_M_contig887 318821..322506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig887.20246.1 ID=prot_F-serratus_M_contig887.20246.1|Name=mRNA_F-serratus_M_contig887.20246.1|organism=Fucus serratus male|type=polypeptide|length=512bp
MGFLFFQLTASSPAAAAAAAAASAAMTWFGDGGFAPPRCLLFAEPIDARR
VRRHRCGRMSLASAEVTLGWAEGRLRLNGESRAEVVEVGGCGTDTRRPKN
TDETVELRLRWLRERLLLDEQTVLKMSSSFPHLTQYRVRENLEPKLDWLQ
RRLDVDSETLGRMIASVPSILGLSVEANLEPKLLWIGETLGMDEAESAKL
VLRCPSLFSMSARDGLEKKLEFLREGLGLDQKAIKKIARVSSNFFTYSVE
SNLRPKVRWLRDRMGLDDEGVAKLVSQNPGVFAMREELLERKLAWLEERL
GLDDDKAVRVMTVYPQMLSNSMAAMDGKLEWLRGRLGLSAEEIRRVVVKY
PNLLSYSVDLNLEPTLKWLEAGLGLNAADAGKLVVRLPRLLSANLDENLR
NKVPWLEENLGLSRDEVVGVLVKVPDLLNLNTERNLEPKLAFFFDEMDAS
REDVAAAVCSNAKAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRN
PKSFEGWLERL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf