mRNA_F-serratus_M_contig887.20246.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig887.20246.1
Unique NamemRNA_F-serratus_M_contig887.20246.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Match: D7FVG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.020e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 3 
Query: 1788 KAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRNPKSFEGWLERL 1934
            KA++YSLEKRWKPRVA IR +GVTPCF+DHW+ ++NR+P  F+ WL  L
Sbjct:  603 KALLYSLEKRWKPRVARIRAKGVTPCFHDHWKPIANRSPAKFDEWLTTL 651
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BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Match: A0A6H5JDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.050e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 3 
Query: 1782 NAKAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRNPKSFEGWLE 1928
            N+  ++YSL+KRW+PRVA +R   V P F+ HWR ++ R+ +SF  WLE
Sbjct:  558 NSSLLMYSLDKRWRPRVAHMRSLRVKPVFSAHWRPMATRDDESFGAWLE 606
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig887.20246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVG5_ECTSI2.020e-1265.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDC9_9PHAE8.050e-648.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig887contigF-serratus_M_contig887:318821..322506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FVG5
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_001000.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons2
Model size1961
Cds size1536
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig887.20246.1prot_F-serratus_M_contig887.20246.1Fucus serratus malepolypeptideF-serratus_M_contig887 320947..322482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932578.4576194-UTR-F-serratus_M_contig887:318820..3189961622932578.4576194-UTR-F-serratus_M_contig887:318820..318996Fucus serratus maleUTRF-serratus_M_contig887 318821..318996 +
1690964375.0815568-UTR-F-serratus_M_contig887:318820..3189961690964375.0815568-UTR-F-serratus_M_contig887:318820..318996Fucus serratus maleUTRF-serratus_M_contig887 318821..318996 +
1622932578.5103116-UTR-F-serratus_M_contig887:320721..3209461622932578.5103116-UTR-F-serratus_M_contig887:320721..320946Fucus serratus maleUTRF-serratus_M_contig887 320722..320946 +
1690964375.099587-UTR-F-serratus_M_contig887:320721..3209461690964375.099587-UTR-F-serratus_M_contig887:320721..320946Fucus serratus maleUTRF-serratus_M_contig887 320722..320946 +
1622932578.544197-UTR-F-serratus_M_contig887:322482..3225061622932578.544197-UTR-F-serratus_M_contig887:322482..322506Fucus serratus maleUTRF-serratus_M_contig887 322483..322506 +
1690964375.127431-UTR-F-serratus_M_contig887:322482..3225061690964375.127431-UTR-F-serratus_M_contig887:322482..322506Fucus serratus maleUTRF-serratus_M_contig887 322483..322506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932578.5285509-CDS-F-serratus_M_contig887:320946..3224821622932578.5285509-CDS-F-serratus_M_contig887:320946..322482Fucus serratus maleCDSF-serratus_M_contig887 320947..322482 +
1690964375.1131737-CDS-F-serratus_M_contig887:320946..3224821690964375.1131737-CDS-F-serratus_M_contig887:320946..322482Fucus serratus maleCDSF-serratus_M_contig887 320947..322482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig887.20246.1

>prot_F-serratus_M_contig887.20246.1 ID=prot_F-serratus_M_contig887.20246.1|Name=mRNA_F-serratus_M_contig887.20246.1|organism=Fucus serratus male|type=polypeptide|length=512bp
MGFLFFQLTASSPAAAAAAAAASAAMTWFGDGGFAPPRCLLFAEPIDARR
VRRHRCGRMSLASAEVTLGWAEGRLRLNGESRAEVVEVGGCGTDTRRPKN
TDETVELRLRWLRERLLLDEQTVLKMSSSFPHLTQYRVRENLEPKLDWLQ
RRLDVDSETLGRMIASVPSILGLSVEANLEPKLLWIGETLGMDEAESAKL
VLRCPSLFSMSARDGLEKKLEFLREGLGLDQKAIKKIARVSSNFFTYSVE
SNLRPKVRWLRDRMGLDDEGVAKLVSQNPGVFAMREELLERKLAWLEERL
GLDDDKAVRVMTVYPQMLSNSMAAMDGKLEWLRGRLGLSAEEIRRVVVKY
PNLLSYSVDLNLEPTLKWLEAGLGLNAADAGKLVVRLPRLLSANLDENLR
NKVPWLEENLGLSRDEVVGVLVKVPDLLNLNTERNLEPKLAFFFDEMDAS
REDVAAAVCSNAKAMVYSLEKRWKPRVAAIRERGVTPCFNDHWRSVSNRN
PKSFEGWLERL*
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mRNA from alignment at F-serratus_M_contig887:318821..322506+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig887.20246.1 ID=mRNA_F-serratus_M_contig887.20246.1|Name=mRNA_F-serratus_M_contig887.20246.1|organism=Fucus serratus male|type=mRNA|length=3686bp|location=Sequence derived from alignment at F-serratus_M_contig887:318821..322506+ (Fucus serratus male)
ACAGAGTAGTGCTGCTGTTCTGGTGTATAAACAGATCCTTGCAATGACCA
CGGAAAGAATTTGATCCGTGGACGGAGCGAGTGGTTTAACGATAGATTGA
ATCCTGAGCAAAGTTCTACTACAGCTGATGATCCTGCAACTCTTGCGCGG
CAAAGCAGTGACCTTCCTCTTAGACTGTGAGTCCTATTCGTCATAGAGTT
GAAGTATGTTCCTCTGCAGATTTGATTCCTATGGATGCAGGTTCCAGATA
ACTGAACGTGTCCTAGCAAGCGCATGACCGGTCTCTACTCTCCTTGACTT
GACCGCATCTTTCACGTAGGATGTCTCGACGATTGCCAGGGGACAAACGT
GCCAGCATTCACCTTCTCGTGGAATCACAATTCTTTCGGTGCGCCGTTTA
CCCGGGGGCCACCAGTGCGCGTATTCCAGTACTGCACTGTACGTACTTAT
ACCGCTTGTAGCCTCCAAATTGGGAGTCATGTCGTACACCCCTACATGGA
AGAACATGTTGACAGGCAACATGCGCACTACGTACATTATGCTGCACTAC
CGCTGCACTACTTGTACAGCATCCTCGCTTGGCGTGCGCAGTGCGTCGCA
TCTCTTAGCCCGGGTGGTAAGCGTCCCATTCACCCCTAGAGTTGGGCGCG
GCGCTTGTGTCCGAGTACACGCGCCGATGTTCGCCTTTTTTTTTTTAGTA
CGTATGACTCGTGCAGCAGCTCTACAAACAACATCGGGATGTTTTTAAAT
AAAAAAAATAAAAAAAATAGAACGCGCCTATACCTTCTGAGCATCCCCCA
GTTTTAGAGTGGGGAAAATGCCAAAACGTTTAGGTGTCACTCGTCCCTTC
TTCAATaAAAAGTGTACAGTTTAAAGGTGGGCTTCTCCCCGACATTATAC
TGTTGACCCAATGTTATCTGCATCGGGGAACCCTTTTAAATGCCATGAAG
AGGTTTTGTATTTGCAGCCTTTGATCCCACCTAAACGTTCGGACATTTTT
TCTTCTGACTGGAGGATGCTCAGGAAGGTCTAGGCGCGTTCTAGTTTTTC
TTCAAACAATGTTTTGACCTTTTTTTATCCTGACTGGAAGATGCTCAGAA
GGTATACATAGTCTAGTCGCGTTCTGGTTTTTCTCTAAACAGAGGAAAAT
ATGTACAGAAGTACCAGTCTAAAGGCTTGAAAATTCATCACAACACGCCC
TACGTTGGAACTGTCGATACATGATACTGCTACACTGCTGTTCTTGACTG
CCTCTAGAGCGTTTGGCTCTGCCGCCTTGTTTGATGTGCTCCATGCGACT
TGGACTACACGGGGACATGCTCTGTACAATTACTAGTACTATTTATATCG
ATCGTGGAGAGTACCAGGTTACCCTGTCGAATGAACGAAACACGAGACTT
GCAGTCTATATATTATAAATATATATATATATATATGCTTGTATATATTT
ATACATCATCACCCAGATTTTGTTTGTATTGCGTCGTTTTCTGTTTCCAA
CAGCCTCACCTCGGTGGAGCATTTTTGCAACACCGAATCTTCTCCCGGTG
GTGAACGAACGATTTTTTTAGCGAGCTGTAGTCTAAAGGCACGGTAGATA
TCTCGCCTCAACAACTCTACGTTGCACATCTACAACCAAGTTCTCCACAG
CATGCGATGCGCCCGTCCAACGAGAATCCCGAGCAGTATTAGTCGACCGC
TCCAGATTTTGCTGACATCGCAAAAGCATCAGTCTGTGTCCTCCCCCCCC
CCTGCACTACGGAGGAAACGGCAAAAAAAGCCCCGCATCTACTTTACGCG
AACTCTGTGCTCTGCCCTCCTCTCAACCACGCATTACTAAAAAAATATTC
CCTGCGCTGCCGCTCCCCCGTGCTGCCGGCCACCCCCCCAACTAATTGCA
GGCGATCAATACAACGCAGCAGCAGCAGCAGCCTTCCTGGTGTGCGTCGT
ATCTCCTCCACGCAGCGGTCGGCGGCGAAGCCACGTGCGATCTTGACCCG
AACTGGCTTCGCTCTCTGCCTCCCACCGATTGATCGATACGGCTCTTCGC
TGCAACAGCGACGGCGCGCTCTGGGGCAACTCCCTATCGCGCTCCAAAGA
AGACAGCAGTGAAAACCCTCCCAGCAATGGGATTCCTCTTCTTCCAGCTG
ACCGCGAGCTCGCCCGCGGCAGCGGCGGCGGCAGCGGCGGCGTCGGCAGC
GATGACGTGGTTCGGTGACGGTGGATTTGCCCCCCCTCGCTGTCTCCTGT
TCGCGGAGCCGATCGATGCGCGCCGCGTGCGGCGACATCGATGCGGGCGG
ATGAGCCTCGCTTCCGCCGAGGTGACCCTTGGCTGGGCAGAGGGTCGCCT
CAGGCTCAACGGCGAGAGTCGGGCGGAGGTGGTGGAGGTGGGAGGCTGCG
GAACGGACACTCGGCGCCCGAAGAACACAGACGAAACGGTGGAGCTTCGG
CTTCGATGGCTACGGGAGCGGCTGCTCCTGGACGAACAGACCGTGCTCAA
GATGAGCTCGTCGTTTCCTCATCTGACGCAGTACCGTGTAAGGGAAAACT
TGGAGCCGAAGCTGGACTGGCTCCAGCGGCGGCTGGACGTGGACAGCGAG
ACGCTCGGGAGGATGATCGCGAGCGTCCCCTCCATCCTGGGATTGAGCGT
GGAGGCCAACCTCGAGCCGAAGCTGTTGTGGATCGGGGAGACGCTGGGCA
TGGACGAGGCCGAGTCGGCGAAGCTTGTGCTGCGGTGTCCGAGCCTTTTC
AGCATGAGCGCCCGGGACGGGCTTGAGAAGAAGCTGGAATTCCTGCGAGA
GGGCTTGGGGCTTGACCAGAAGGCCATCAAAAAGATCGCGAGGGTTTCCT
CCAACTTTTTCACCTACAGCGTCGAGAGTAACCTGCGGCCGAAGGTAAGG
TGGCTCCGCGACCGCATGGGGCTGGACGACGAGGGCGTAGCCAAGCTGGT
GAGCCAGAACCCGGGGGTGTTCGCCATGAGGGAAGAGCTCCTCGAGCGGA
AGCTGGCGTGGCTAGAGGAACGCCTGGGCCTCGACGACGACAAGGCTGTC
CGGGTCATGACCGTCTACCCCCAGATGCTGTCGAACAGTATGGCCGCCAT
GGACGGGAAGCTCGAGTGGCTGAGGGGGCGACTGGGCCTCTCCGCCGAAG
AGATCAGGCGGGTGGTGGTCAAGTACCCCAATCTCCTGTCGTACAGCGTG
GATCTCAACCTGGAGCCGACGCTGAAGTGGCTCGAAGCCGGCTTAGGGTT
GAATGCCGCCGACGCTGGCAAGCTCGTGGTTCGCTTGCCGAGGCTACTCA
GCGCCAACCTCGACGAAAACCTCCGGAACAAGGTTCCCTGGCTGGAAGAA
AACCTCGGCCTCTCGAGGGACGAGGTGGTGGGCGTACTGGTGAAGGTTCC
CGACCTTTTGAACCTCAACACGGAGAGAAACCTGGAGCCGAAGCTCGCCT
TCTTTTTTGACGAGATGGACGCCTCCCGGGAGGACGTTGCAGCGGCGGTA
TGCTCCAACGCGAAGGCGATGGTGTACAGCCTCGAGAAGCGTTGGAAACC
CCGGGTCGCGGCGATTCGGGAGCGGGGAGTGACCCCGTGTTTCAACGACC
ACTGGCGGTCGGTATCGAATCGAAATCCGAAGAGCTTTGAGGGGTGGCTT
GAGCGCTTGTAGCGACCCTTTCGGGTCCCTTGCTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig887:318821..322506+

>mRNA_F-serratus_M_contig887.20246.1 ID=mRNA_F-serratus_M_contig887.20246.1|Name=mRNA_F-serratus_M_contig887.20246.1|organism=Fucus serratus male|type=CDS|length=3072bp|location=Sequence derived from alignment at F-serratus_M_contig887:318821..322506+ (Fucus serratus male)
ATGGGATTCCTCTTCTTCCAGCTGACCGCGAGCTCGCCCGCGGCAGCGGC
GGCGGCAGCGGCGGCGTCGGCAGCGATGACGTGGTTCGGTGACGGTGGAT
TTGCCCCCCCTCGCTGTCTCCTGTTCGCGGAGCCGATCGATGCGCGCCGC
GTGCGGCGACATCGATGCGGGCGGATGAGCCTCGCTTCCGCCGAGGTGAC
CCTTGGCTGGGCAGAGGGTCGCCTCAGGCTCAACGGCGAGAGTCGGGCGG
AGGTGGTGGAGGTGGGAGGCTGCGGAACGGACACTCGGCGCCCGAAGAAC
ACAGACGAAACGGTGGAGCTTCGGCTTCGATGGCTACGGGAGCGGCTGCT
CCTGGACGAACAGACCGTGCTCAAGATGAGCTCGTCGTTTCCTCATCTGA
CGCAGTACCGTGTAAGGGAAAACTTGGAGCCGAAGCTGGACTGGCTCCAG
CGGCGGCTGGACGTGGACAGCGAGACGCTCGGGAGGATGATCGCGAGCGT
CCCCTCCATCCTGGGATTGAGCGTGGAGGCCAACCTCGAGCCGAAGCTGT
TGTGGATCGGGGAGACGCTGGGCATGGACGAGGCCGAGTCGGCGAAGCTT
GTGCTGCGGTGTCCGAGCCTTTTCAGCATGAGCGCCCGGGACGGGCTTGA
GAAGAAGCTGGAATTCCTGCGAGAGGGCTTGGGGCTTGACCAGAAGGCCA
TCAAAAAGATCGCGAGGGTTTCCTCCAACTTTTTCACCTACAGCGTCGAG
AGTAACCTGCGGCCGAAGGTAAGGTGGCTCCGCGACCGCATGGGGCTGGA
CGACGAGGGCGTAGCCAAGCTGGTGAGCCAGAACCCGGGGGTGTTCGCCA
TGAGGGAAGAGCTCCTCGAGCGGAAGCTGGCGTGGCTAGAGGAACGCCTG
GGCCTCGACGACGACAAGGCTGTCCGGGTCATGACCGTCTACCCCCAGAT
GCTGTCGAACAGTATGGCCGCCATGGACGGGAAGCTCGAGTGGCTGAGGG
GGCGACTGGGCCTCTCCGCCGAAGAGATCAGGCGGGTGGTGGTCAAGTAC
CCCAATCTCCTGTCGTACAGCGTGGATCTCAACCTGGAGCCGACGCTGAA
GTGGCTCGAAGCCGGCTTAGGGTTGAATGCCGCCGACGCTGGCAAGCTCG
TGGTTCGCTTGCCGAGGCTACTCAGCGCCAACCTCGACGAAAACCTCCGG
AACAAGGTTCCCTGGCTGGAAGAAAACCTCGGCCTCTCGAGGGACGAGGT
GGTGGGCGTACTGGTGAAGGTTCCCGACCTTTTGAACCTCAACACGGAGA
GAAACCTGGAGCCGAAGCTCGCCTTCTTTTTTGACGAGATGGACGCCTCC
CGGGAGGACGTTGCAGCGGCGGTATGCTCCAACGCGAAGGCGATGGTGTA
CAGCCTCGAGAAGCGTTGGAAACCCCGGGTCGCGGCGATTCGGGAGCGGG
GAGTGACCCCGTGTTTCAACGACCACTGGCGGTCGGTATCGAATCGAAAT
CCGAAGAGCTTTGAGGGGTGGCTTGAGCGCTTGTAGATGGGATTCCTCTT
CTTCCAGCTGACCGCGAGCTCGCCCGCGGCAGCGGCGGCGGCAGCGGCGG
CGTCGGCAGCGATGACGTGGTTCGGTGACGGTGGATTTGCCCCCCCTCGC
TGTCTCCTGTTCGCGGAGCCGATCGATGCGCGCCGCGTGCGGCGACATCG
ATGCGGGCGGATGAGCCTCGCTTCCGCCGAGGTGACCCTTGGCTGGGCAG
AGGGTCGCCTCAGGCTCAACGGCGAGAGTCGGGCGGAGGTGGTGGAGGTG
GGAGGCTGCGGAACGGACACTCGGCGCCCGAAGAACACAGACGAAACGGT
GGAGCTTCGGCTTCGATGGCTACGGGAGCGGCTGCTCCTGGACGAACAGA
CCGTGCTCAAGATGAGCTCGTCGTTTCCTCATCTGACGCAGTACCGTGTA
AGGGAAAACTTGGAGCCGAAGCTGGACTGGCTCCAGCGGCGGCTGGACGT
GGACAGCGAGACGCTCGGGAGGATGATCGCGAGCGTCCCCTCCATCCTGG
GATTGAGCGTGGAGGCCAACCTCGAGCCGAAGCTGTTGTGGATCGGGGAG
ACGCTGGGCATGGACGAGGCCGAGTCGGCGAAGCTTGTGCTGCGGTGTCC
GAGCCTTTTCAGCATGAGCGCCCGGGACGGGCTTGAGAAGAAGCTGGAAT
TCCTGCGAGAGGGCTTGGGGCTTGACCAGAAGGCCATCAAAAAGATCGCG
AGGGTTTCCTCCAACTTTTTCACCTACAGCGTCGAGAGTAACCTGCGGCC
GAAGGTAAGGTGGCTCCGCGACCGCATGGGGCTGGACGACGAGGGCGTAG
CCAAGCTGGTGAGCCAGAACCCGGGGGTGTTCGCCATGAGGGAAGAGCTC
CTCGAGCGGAAGCTGGCGTGGCTAGAGGAACGCCTGGGCCTCGACGACGA
CAAGGCTGTCCGGGTCATGACCGTCTACCCCCAGATGCTGTCGAACAGTA
TGGCCGCCATGGACGGGAAGCTCGAGTGGCTGAGGGGGCGACTGGGCCTC
TCCGCCGAAGAGATCAGGCGGGTGGTGGTCAAGTACCCCAATCTCCTGTC
GTACAGCGTGGATCTCAACCTGGAGCCGACGCTGAAGTGGCTCGAAGCCG
GCTTAGGGTTGAATGCCGCCGACGCTGGCAAGCTCGTGGTTCGCTTGCCG
AGGCTACTCAGCGCCAACCTCGACGAAAACCTCCGGAACAAGGTTCCCTG
GCTGGAAGAAAACCTCGGCCTCTCGAGGGACGAGGTGGTGGGCGTACTGG
TGAAGGTTCCCGACCTTTTGAACCTCAACACGGAGAGAAACCTGGAGCCG
AAGCTCGCCTTCTTTTTTGACGAGATGGACGCCTCCCGGGAGGACGTTGC
AGCGGCGGTATGCTCCAACGCGAAGGCGATGGTGTACAGCCTCGAGAAGC
GTTGGAAACCCCGGGTCGCGGCGATTCGGGAGCGGGGAGTGACCCCGTGT
TTCAACGACCACTGGCGGTCGGTATCGAATCGAAATCCGAAGAGCTTTGA
GGGGTGGCTTGAGCGCTTGTAG
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