mRNA_F-serratus_M_contig886.20236.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig886.20236.1
Unique NamemRNA_F-serratus_M_contig886.20236.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig886.20236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig886contigF-serratus_M_contig886:181762..182263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932577.7764006-CDS-F-serratus_M_contig886:181762..1818391622932577.7764006-CDS-F-serratus_M_contig886:181762..181839Fucus serratus maleCDSF-serratus_M_contig886 181763..181839 -
1690964374.786345-CDS-F-serratus_M_contig886:181762..1818391690964374.786345-CDS-F-serratus_M_contig886:181762..181839Fucus serratus maleCDSF-serratus_M_contig886 181763..181839 -
1622932577.8009183-CDS-F-serratus_M_contig886:182184..1822631622932577.8009183-CDS-F-serratus_M_contig886:182184..182263Fucus serratus maleCDSF-serratus_M_contig886 182185..182263 -
1690964374.8016303-CDS-F-serratus_M_contig886:182184..1822631690964374.8016303-CDS-F-serratus_M_contig886:182184..182263Fucus serratus maleCDSF-serratus_M_contig886 182185..182263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig886.20236.1prot_F-serratus_M_contig886.20236.1Fucus serratus malepolypeptideF-serratus_M_contig886 181763..182263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig886.20236.1

>prot_F-serratus_M_contig886.20236.1 ID=prot_F-serratus_M_contig886.20236.1|Name=mRNA_F-serratus_M_contig886.20236.1|organism=Fucus serratus male|type=polypeptide|length=52bp
YGRVGEGRRNCVRPAAEEERSGRGGQDHVPDWQPRKLLGMVEARSVNVKK
TT
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mRNA from alignment at F-serratus_M_contig886:181762..182263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig886.20236.1 ID=mRNA_F-serratus_M_contig886.20236.1|Name=mRNA_F-serratus_M_contig886.20236.1|organism=Fucus serratus male|type=mRNA|length=502bp|location=Sequence derived from alignment at F-serratus_M_contig886:181762..182263- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGGTTGAGGTTGCACCTGGGGTG
ACTGTAGCAAGCTTGAGACGTTTTCGAACCGCGTTGATTGGACCAACCCA
AGGACTCCCTAAGCGACGTCGATTGTGCCGTTAGTGAAAACTGAAACCCC
AAGAGTACGGAATGCGGTAGATGCTACGCGTTTGGGTGCATGGTTGCGAT
CCGGGAGGGTATAGGATGACTCGCGGCTGACTCTTTGCCACACTCTCTCT
CTCGAATGTCCCTCTTCTATTTTTTTTTTCTGGCATGTGTATTTTGTTAT
CCTTGTTCCTTTCTCTTTGTCGTTTTTGTGTGTGTGTTTGATAGATGTTC
CTCTGACCTCTTTGTGTCCAGCAGACCACGTACCGGATTGGCAACCACGT
AAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTGAAGAAAACAAC
AA
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Coding sequence (CDS) from alignment at F-serratus_M_contig886:181762..182263-

>mRNA_F-serratus_M_contig886.20236.1 ID=mRNA_F-serratus_M_contig886.20236.1|Name=mRNA_F-serratus_M_contig886.20236.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig886:181762..182263- (Fucus serratus male)
TATGGCCGCGTGGGTGAGGGAAGAAGAAATTGCGTCCGACCAGCGGCAGA
AGAAGAGAGAAGCGGAAGAGGCGGACAAGTATGGCCGCGTGGGTGAGGGA
AGAAGAAATTGCGTCCGACCAGCGGCAGAAGAAGAGAGAAGCGGAAGAGG
CGGACAAGACCACGTACCGGATTGGCAACCACGTAAATTACTGGGTATGG
TTGAGGCCCGATCGGTTAATGTGAAGAAAACAACAACCACGTACCGGATT
GGCAACCACGTAAATTACTGGGTATGGTTGAGGCCCGATCGGTTAATGTG
AAGAAAACAACA
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