mRNA_F-serratus_M_contig885.20235.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig885.20235.1
Unique NamemRNA_F-serratus_M_contig885.20235.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig885.20235.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.070e-14
Identity = 62/117 (52.99%), Postives = 67/117 (57.26%), Query Frame = 3 
Query:   87 KENLRELMLALGAVEDDNPNASERSLYGQEGKEEASVAPGYRPWSQGGRRDAVEEGKISQDSSPSGNTQTGDEAAGEADAGGGNTLMSSVRAQNEVIVSRLYDMSLQEALGLSPSSS 437
            KENLRELMLALGAV D      + S    EG     V  G     + G   A     +S      G+      A GEADAGGGNTLMSSVRAQNE I SRL DMSLQEALGLS S+S
Sbjct: 3459 KENLRELMLALGAV-DVRDGDGDASAEDDEGGRRHGVGDGVEARDEAGNVSAGRGDVVSVSDGYDGDHVIA-AATGEADAGGGNTLMSSVRAQNEDISSRLQDMSLQEALGLSSSAS 3573
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BLAST of mRNA_F-serratus_M_contig885.20235.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-14
Identity = 61/117 (52.14%), Postives = 66/117 (56.41%), Query Frame = 3 
Query:   87 KENLRELMLALGAVEDDNPNASERSLYGQEGKEEASVAPGYRPWSQGGRRDAVEEGKISQDSSPSGNTQTGDEAAGEADAGGGNTLMSSVRAQNEVIVSRLYDMSLQEALGLSPSSS 437
            KENLRELMLALGAV D+     + S    EG     V        + G   A   G +   S           A GEADAGGGNTLMSSVRAQNE I SRL DMSLQEALGLS S+S
Sbjct: 3716 KENLRELMLALGAV-DNREGDGDASAEDDEGGRRHGVGGSVEAGDEAGSI-AAGHGDVVSGSDGYDGDHVMAAATGEADAGGGNTLMSSVRAQNEDISSRLQDMSLQEALGLSSSAS 3830
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig885.20235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ31_ECTSI1.070e-1452.99Viral A-type inclusion protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJI0_9PHAE2.690e-1452.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig885contigF-serratus_M_contig885:352841..354117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig885.20235.1prot_F-serratus_M_contig885.20235.1Fucus serratus malepolypeptideF-serratus_M_contig885 352948..354084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932577.6881323-UTR-F-serratus_M_contig885:352840..3529471622932577.6881323-UTR-F-serratus_M_contig885:352840..352947Fucus serratus maleUTRF-serratus_M_contig885 352841..352947 +
1690964374.7395215-UTR-F-serratus_M_contig885:352840..3529471690964374.7395215-UTR-F-serratus_M_contig885:352840..352947Fucus serratus maleUTRF-serratus_M_contig885 352841..352947 +
1622932577.7285995-UTR-F-serratus_M_contig885:354084..3541171622932577.7285995-UTR-F-serratus_M_contig885:354084..354117Fucus serratus maleUTRF-serratus_M_contig885 354085..354117 +
1690964374.7741766-UTR-F-serratus_M_contig885:354084..3541171690964374.7741766-UTR-F-serratus_M_contig885:354084..354117Fucus serratus maleUTRF-serratus_M_contig885 354085..354117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932577.7013113-CDS-F-serratus_M_contig885:352947..3532471622932577.7013113-CDS-F-serratus_M_contig885:352947..353247Fucus serratus maleCDSF-serratus_M_contig885 352948..353247 +
1690964374.7535155-CDS-F-serratus_M_contig885:352947..3532471690964374.7535155-CDS-F-serratus_M_contig885:352947..353247Fucus serratus maleCDSF-serratus_M_contig885 352948..353247 +
1622932577.7148252-CDS-F-serratus_M_contig885:353976..3540841622932577.7148252-CDS-F-serratus_M_contig885:353976..354084Fucus serratus maleCDSF-serratus_M_contig885 353977..354084 +
1690964374.7657118-CDS-F-serratus_M_contig885:353976..3540841690964374.7657118-CDS-F-serratus_M_contig885:353976..354084Fucus serratus maleCDSF-serratus_M_contig885 353977..354084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig885.20235.1

>prot_F-serratus_M_contig885.20235.1 ID=prot_F-serratus_M_contig885.20235.1|Name=mRNA_F-serratus_M_contig885.20235.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MLALGAVEDDNPNASERSLYGQEGKEEASVAPGYRPWSQGGRRDAVEEGK
ISQDSSPSGNTQTGDEAAGEADAGGGNTLMSSVRAQNEVIVSRLYDMSLQ
EALGLSPSSSESRPPWPVSGSPGAASSSSPLADPT*
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mRNA from alignment at F-serratus_M_contig885:352841..354117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig885.20235.1 ID=mRNA_F-serratus_M_contig885.20235.1|Name=mRNA_F-serratus_M_contig885.20235.1|organism=Fucus serratus male|type=mRNA|length=1277bp|location=Sequence derived from alignment at F-serratus_M_contig885:352841..354117+ (Fucus serratus male)
GCGGAGTGGTCGCGTTGGGGAGGGGAAGGGACAGAGAAAGGGAGGCGGCA
ACGGCTGCAAGCGATACCGATGACACCGAGGCTGAGAAGGAGAATCTGAG
AGAGTTGATGTTAGCTCTAGGCGCCGTCGAGGACGACAACCCGAACGCCT
CGGAACGATCCCTTTACGGCCAGGAGGGAAAGGAGGAAGCCTCTGTTGCC
CCAGGTTACCGGCCGTGGTCCCAGGGCGGGAGGCGAGACGCTGTCGAGGA
AGGAAAGATAAGCCAGGACAGCAGCCCCAGCGGCAATACGCAGACAGGCG
ACGAGGCGGCGGGCGAGGCAGACGCTGGGGGAGGAAATACTCTGATGTCG
TCGGTTCGGGCGCAGAATGAGGTCATCGTGTCCCGCCTCTACGACATGTC
GCTGCAGGTTCGTTCCTTTTCTTTCACGTATTTCACGCGGATCGCTCTCT
AATCTAGTATTGCCGTAAAGAACGGAGTTAACGCCCCCCAGGGCGTTCCA
TAAAACAATTCCGAAATAGCGCCCTGGGGGCGTTTTTCAGAACAGAAATA
GGGCAGAGGGCGCACCCCCCCGGGGCGTTCACAGAAAGAAAAAAATGTTG
GTCTGGTCGTCTTCCACTGGTCGAGACACGAAAGTAAAAAAAGAAGAAGC
TTGAATTGATGAAGAAATATGAAGAGAAAAAAAGGTACCCGTGCTATTCC
GCCCACTCCATGCTGCTATTAGTAAGTGTGCCTTTCCGCTTCGGCAGTAT
TAATGTTAATAGAGTCCTTCTCGAACACCTTCTCGTGTCGTGGGCTCGGC
CCACGGGGCTTCCTCTGGAAAAAGCGCGAAAAATAAGGCCCCGGGGCGTT
TTTCAGTATAACAAAATAAATCGAGGCGCCCCGGGGCGTTTGCTTTGACG
GGGGCGTTTAGATCGTTCTGTACGGTATTGGACGTGCGAATTGATGGAAG
TTAACACAGTAGCGGCGGAAGTGTTTTTGGCACGAGGAGAGGCCCTCTAA
CGCCCTTGACGTTCAGGATTAAGACGCATCATGCAGCATCATGCATCATG
CATCATGGAGCCGGCCGTGCAGAAGTGTACTAAATCGTTTCGTATCCCAT
GTACTACGTGCGTTGATTGATGCAATTCTTGCGCAGGAAGCGTTGGGATT
ATCACCGTCGTCGTCCGAATCTCGACCGCCCTGGCCAGTATCAGGATCGC
CAGGAGCAGCATCATCATCATCACCTCTGGCCGATCCTACCTAACCTAAC
CTAACCTAACCTGTTAGGACGACGGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig885:352841..354117+

>mRNA_F-serratus_M_contig885.20235.1 ID=mRNA_F-serratus_M_contig885.20235.1|Name=mRNA_F-serratus_M_contig885.20235.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig885:352841..354117+ (Fucus serratus male)
ATGTTAGCTCTAGGCGCCGTCGAGGACGACAACCCGAACGCCTCGGAACG
ATCCCTTTACGGCCAGGAGGGAAAGGAGGAAGCCTCTGTTGCCCCAGGTT
ACCGGCCGTGGTCCCAGGGCGGGAGGCGAGACGCTGTCGAGGAAGGAAAG
ATAAGCCAGGACAGCAGCCCCAGCGGCAATACGCAGACAGGCGACGAGGC
GGCGGGCGAGGCAGACGCTGGGGGAGGAAATACTCTGATGTCGTCGGTTC
GGGCGCAGAATGAGGTCATCGTGTCCCGCCTCTACGACATGTCGCTGCAG
ATGTTAGCTCTAGGCGCCGTCGAGGACGACAACCCGAACGCCTCGGAACG
ATCCCTTTACGGCCAGGAGGGAAAGGAGGAAGCCTCTGTTGCCCCAGGTT
ACCGGCCGTGGTCCCAGGGCGGGAGGCGAGACGCTGTCGAGGAAGGAAAG
ATAAGCCAGGACAGCAGCCCCAGCGGCAATACGCAGACAGGCGACGAGGC
GGCGGGCGAGGCAGACGCTGGGGGAGGAAATACTCTGATGTCGTCGGTTC
GGGCGCAGAATGAGGTCATCGTGTCCCGCCTCTACGACATGTCGCTGCAG
GAAGCGTTGGGATTATCACCGTCGTCGTCCGAATCTCGACCGCCCTGGCC
AGTATCAGGATCGCCAGGAGCAGCATCATCATCATCACCTCTGGCCGATC
CTACCTAAGAAGCGTTGGGATTATCACCGTCGTCGTCCGAATCTCGACCG
CCCTGGCCAGTATCAGGATCGCCAGGAGCAGCATCATCATCATCACCTCT
GGCCGATCCTACCTAA
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