mRNA_F-serratus_M_contig885.20228.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig885.20228.1
Unique NamemRNA_F-serratus_M_contig885.20228.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.230e-45
Identity = 88/122 (72.13%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 PSQLNQRQLFAYDIVRAHKDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPLRAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            P  LN+RQ   YD+VR H +   E EPLRMMVLGTAGTGKS+LV ALS LLGG +RRA PTGMAAFLI GSTLHSLL+LP+R GR L G SLK LQ SL GV Y++IDELSMVSQSQ AWVD
Sbjct: 1115 PDSLNERQRNCYDVVRDHFENERE-EPLRMMVLGTAGTGKSYLVYALSRLLGGFLRRAAPTGMAAFLIAGSTLHSLLRLPVRQGRNLQGQSLKALQNSLTGVKYIIIDELSMVSQSQMAWVD 1235          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A6S7IHH9_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHH9_PARCT)

HSP 1 Score: 120 bits (301), Expect = 1.280e-29
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    4 SQLNQRQLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            S  ++ Q  AY+IV+ H +D   E+EPL ++++G AGTGKS+L+NA+ +LL  +      TG A+F I G T+HSLLKLP+  R  + +TG SL RLQ+SLNG+DY+++DE SM+ Q+ F W+D
Sbjct:  224 SSFSRMQQLAYNIVKTHFEDESPEKEPLFLIIIGEAGTGKSYLINAIRNLLQSKCAVTATTGKASFNIRGVTIHSLLKLPIGTRGNKDVTGQSLCRLQESLNGIDYIIVDEYSMLGQTTFGWID 347          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A7D9HI07_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HI07_PARCT)

HSP 1 Score: 114 bits (284), Expect = 1.950e-28
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   10 LNQRQLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
             ++ Q  AY+IV++H  D   E+EPL +++ G AGTGKS+L+NA+ +LL  +   A  TG AAF I G T+HSLLKLP+  R  + LTG SL RLQ+S+N + Y++IDE SM+ Q  F W+D
Sbjct:  130 FSEMQKLAYNIVKSHFDDTSSEKEPLCLIINGFAGTGKSYLINAIRNLLQSKCAVAATTGKAAFNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLDQVTFGWID 251          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A1X7T4W5_AMPQE (ATP-dependent DNA helicase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T4W5_AMPQE)

HSP 1 Score: 108 bits (271), Expect = 1.310e-27
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 PSQLNQRQLFAYDIVRAHKDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPLRAG-RALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            P  L  RQL+ Y  V+ H + + + EPL +++ GTAGTGKS+L+  L  LLGG +R A PTG+A+F+I   TLHSLL LP+R     + G +L+++Q  ++   YL+IDE+SMV +  F  +D
Sbjct:   55 PDNLQGRQLYVYTTVKQHSESNSQ-EPLHIIINGTAGTGKSYLIKCLRLLLGGSVRVAAPTGVASFIIEVRTLHSLLHLPVRGDFMEMEGSNLQKMQDEMSSTQYLIIDEMSMVGRQTFVMID 176          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: UPI00106C8768 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8768)

HSP 1 Score: 113 bits (282), Expect = 1.420e-27
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   22 QLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            Q  A+DIV++H  D   E+EPL +++ G AGTGKS+L+NAL +LL  +      TG AA+ I G T+HSLLKLP+  R  + LTG SL RLQ+S+N ++Y++IDE SM+ Q  F W+D
Sbjct:    2 QKLAFDIVKSHFDDTSSEKEPLCLIINGVAGTGKSYLINALRNLLQSKCAITATTGKAAYNIKGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIEYIIIDEYSMLGQVTFGWLD 119          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: UPI00106C3E43 (ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C3E43)

HSP 1 Score: 112 bits (279), Expect = 1.470e-27
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 PSQLNQRQLFAYDIVRAHKDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPLRAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            P  LN +Q  A+DI+ A    + E EPL M+V GTAGTGK++L++AL  +L  +      TG+AAF IGG TLHS  +LP+R  R L GDSL+RLQ  L G  +L+IDE+SM+     +W+D
Sbjct:   14 PGTLNDKQRLAFDIITASMA-NDECEPLHMIVSGTAGTGKTYLISALKQVLQDQCIVTATTGIAAFSIGGQTLHSAAQLPIREYRELQGDSLQRLQLRLEGKRFLIIDEMSMIGHKMLSWLD 134          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A6S7LQ31_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LQ31_PARCT)

HSP 1 Score: 113 bits (283), Expect = 1.730e-27
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   22 QLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            Q  AYDIV++H  D   E+EPL +++ G AGTGKS+L+NA+ +LL  +      TG AA+ I G T+HSLLKLP+  R  + LTG SL RLQ+S+N + Y++IDE SM+ Q  F W+D
Sbjct:    2 QKLAYDIVKSHFHDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVTATTGKAAYNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWID 119          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A1X7U1S2_AMPQE (ATP-dependent DNA helicase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U1S2_AMPQE)

HSP 1 Score: 111 bits (278), Expect = 2.100e-27
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 PSQLNQRQLFAYDIVRAHKDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPLRAG-RALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            P  L  RQ   YD V+AH +  G  +PL ++V GTAGTGKS+L+N L  LLG  ++ A PTG+AAF+I G TLHSLL LP+R   + + G +L+ +Q+ L+   YL+IDE+SMVS+  F  +D
Sbjct:  106 PDNLQGRQRDVYDTVKAHFE-SGNDDPLHIIVNGTAGTGKSYLINCLRLLLGTSLKVAAPTGVAAFIIEGRTLHSLLHLPVRGDFKDMEGINLQNIQEELSSTKYLIIDEMSMVSKKTFGMID 227          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A7D9JFR3_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFR3_PARCT)

HSP 1 Score: 114 bits (286), Expect = 3.330e-27
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   10 LNQRQLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
             ++ Q  AYDIV++H  D   E+EPL +++ G AGTGKS+L+NA+ +LL  +   A  TG AA+ I G T+HSLLKLP+  R  + LTG SL RLQ+S+N + Y++IDE SM+ Q  F W+D
Sbjct:  260 FSEMQKLAYDIVKSHFDDVSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGARGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWID 381          
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Match: A0A7D9IK46_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IK46_PARCT)

HSP 1 Score: 114 bits (285), Expect = 4.830e-27
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   22 QLFAYDIVRAH-KDRHGEREPLRMMVLGTAGTGKSWLVNALSHLLGGRIRRAVPTGMAAFLIGGSTLHSLLKLPL--RAGRALTGDSLKRLQQSLNGVDYLVIDELSMVSQSQFAWVD 366
            Q  AYDIV++H  D   E EPL +++ G AGTGKS+L+NA+ +LL  +   A  TG AAF I G T+HSLLKLP+  R  + LTG SL RLQ+S+N + Y++IDE SM+ Q  F W+D
Sbjct: 1182 QKLAYDIVKSHFDDTSSEMEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAFNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWID 1299          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig885.20228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L976_9PHAE4.230e-4572.13ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6S7IHH9_PARCT1.280e-2948.39ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A7D9HI07_PARCT1.950e-2849.18ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A1X7T4W5_AMPQE1.310e-2744.72ATP-dependent DNA helicase n=1 Tax=Amphimedon quee... [more]
UPI00106C87681.420e-2750.00ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendr... [more]
UPI00106C3E431.470e-2748.36ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendr... [more]
A0A6S7LQ31_PARCT1.730e-2750.00ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A1X7U1S2_AMPQE2.100e-2748.78ATP-dependent DNA helicase n=1 Tax=Amphimedon quee... [more]
A0A7D9JFR3_PARCT3.330e-2749.18ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
A0A7D9IK46_PARCT4.830e-2751.69ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig885contigF-serratus_M_contig885:31619..31984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.2e-22
Seed eggNOG ortholog400682.PAC_15712517
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932576.7372475-CDS-F-serratus_M_contig885:31618..319841622932576.7372475-CDS-F-serratus_M_contig885:31618..31984Fucus serratus maleCDSF-serratus_M_contig885 31619..31984 -
1690964374.3552852-CDS-F-serratus_M_contig885:31618..319841690964374.3552852-CDS-F-serratus_M_contig885:31618..31984Fucus serratus maleCDSF-serratus_M_contig885 31619..31984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig885.20228.1prot_F-serratus_M_contig885.20228.1Fucus serratus malepolypeptideF-serratus_M_contig885 31619..31984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig885.20228.1

>prot_F-serratus_M_contig885.20228.1 ID=prot_F-serratus_M_contig885.20228.1|Name=mRNA_F-serratus_M_contig885.20228.1|organism=Fucus serratus male|type=polypeptide|length=122bp
PSQLNQRQLFAYDIVRAHKDRHGEREPLRMMVLGTAGTGKSWLVNALSHL
LGGRIRRAVPTGMAAFLIGGSTLHSLLKLPLRAGRALTGDSLKRLQQSLN
GVDYLVIDELSMVSQSQFAWVD
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mRNA from alignment at F-serratus_M_contig885:31619..31984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig885.20228.1 ID=mRNA_F-serratus_M_contig885.20228.1|Name=mRNA_F-serratus_M_contig885.20228.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig885:31619..31984- (Fucus serratus male)
CCTTCTCAGCTTAATCAGCGTCAGCTTTTCGCCTATGATATTGTTCGTGC CCACAAGGATAGACATGGCGAACGTGAACCCCTGCGTATGATGGTGCTAG GGACTGCAGGAACGGGGAAGTCTTGGCTCGTGAACGCCCTGTCTCACTTA CTCGGGGGTAGAATCAGACGTGCGGTGCCGACGGGAATGGCAGCATTCCT CATCGGCGGCAGCACTTTGCACAGTTTACTGAAACTGCCCTTGCGGGCAG GTCGAGCGTTAACGGGAGATTCCCTCAAAAGGCTACAGCAATCGCTTAAC GGTGTTGATTACCTCGTTATTGACGAACTAAGCATGGTGAGTCAGTCACA GTTTGCTTGGGTGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig885:31619..31984-

>mRNA_F-serratus_M_contig885.20228.1 ID=mRNA_F-serratus_M_contig885.20228.1|Name=mRNA_F-serratus_M_contig885.20228.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig885:31619..31984- (Fucus serratus male)
CCTTCTCAGCTTAATCAGCGTCAGCTTTTCGCCTATGATATTGTTCGTGC
CCACAAGGATAGACATGGCGAACGTGAACCCCTGCGTATGATGGTGCTAG
GGACTGCAGGAACGGGGAAGTCTTGGCTCGTGAACGCCCTGTCTCACTTA
CTCGGGGGTAGAATCAGACGTGCGGTGCCGACGGGAATGGCAGCATTCCT
CATCGGCGGCAGCACTTTGCACAGTTTACTGAAACTGCCCTTGCGGGCAG
GTCGAGCGTTAACGGGAGATTCCCTCAAAAGGCTACAGCAATCGCTTAAC
GGTGTTGATTACCTCGTTATTGACGAACTAAGCATGGTGAGTCAGTCACA
GTTTGCTTGGGTGGACCCTTCTCAGCTTAATCAGCGTCAGCTTTTCGCCT
ATGATATTGTTCGTGCCCACAAGGATAGACATGGCGAACGTGAACCCCTG
CGTATGATGGTGCTAGGGACTGCAGGAACGGGGAAGTCTTGGCTCGTGAA
CGCCCTGTCTCACTTACTCGGGGGTAGAATCAGACGTGCGGTGCCGACGG
GAATGGCAGCATTCCTCATCGGCGGCAGCACTTTGCACAGTTTACTGAAA
CTGCCCTTGCGGGCAGGTCGAGCGTTAACGGGAGATTCCCTCAAAAGGCT
ACAGCAATCGCTTAACGGTGTTGATTACCTCGTTATTGACGAACTAAGCA
TGGTGAGTCAGTCACAGTTTGCTTGGGTGGAC
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