mRNA_F-serratus_M_contig882.20202.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig882.20202.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 632 bits (1629), Expect = 5.280e-200 Identity = 514/1300 (39.54%), Postives = 652/1300 (50.15%), Query Frame = 1
Query: 1 KQRGGCRQHLVETLVEAAAGPVRPSALLPMLCARESGPSVGDLALEILQRVAA----GNGYNSFDGDGTGAPKKSILELLHVLVEEVIASGLAKRSKSSSTRGPPTHLLSFLSRACTVLPAHVMVFSKELLALADSRWSAARKLSITVLGLVLEHG----GSCSETI-SPALASVLRFARVDGDATVRSLAFDCVADFV-----------VGAYDGILSNAGMSVGMENIASHFLHPFLCRCVTPSH-TGTGRGEEVSNQGIVASVNSAGGGASNDGSTSNVGITPKR-GAPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHAQXXXXXXXXXXGTETSSVPDGE-------DDGKRPGQRRHEAITGPWAVGGVLFACLSVAGEALLTDGSKAVRAKATTCSLRILDAHGTDIQ-REKQCRVTTGEVG--ERFPNSSSSAARILSMVVRGACASLEAFAASSCGGSTTHEGSSPGSADVGKKRGAVDAARKLLSLPCVTPTPIELLACYVRCGDASGAAESGAMAAATAKRAIRDVIVQRFCGDIDSLLKTISAVMNV-ENSEGTRIGPVKSFDGAEGWDDRHLEGRSLDSPSEVLCELLSGVSNKILTRLLGAALKAYSRLDDAEHSGRAGVGA--PVLLRTLVLLGEAKG-------QTTAADASSAAESRDRRQEAHSECIVGERESLDQDRLLESGLGLSWRRLERRMEDIKRDGPRAKDGG-----NQGGVLSGGRSGDVEARYD--------ETVVSAAVSECAELLCLFRLLATRSLLSHETGEALEDLVFPSALSRRRLIRPAVSLALALNEPHRLLLSSLAVLQDAAFSRSSTDVGRACDYVRLIGVLARENASFIARHVREQHNIIIARSVQGGSREQPGQRDREEGQDYMAGVSNREAMEQEIRSLCEASVTSDGMLSCYTPFLLAIAK-------------CRVAESADCAFEDP---TEAPPGVHKIQSGHESVGP-REAGANVSGALDHARCPSSLCAEALWAMSEYAVLSPGLAAEKVLPLAETLARDTAEDPQVRDVAMLVLTRGELANDEIAASVCDMLDDEDPMLRQRLLRRLGCLMKESRIKITHLSRFALLLADVNEGVRRIAQGIFLDYLRPRPDAVCRCLFETYFTLDAEEAVKRSILVSLITVGERAAPGRARLESLGSALMRKTTDSCDSSAAFFLSLVLPTVPSFEAAQVALRRGQLTQVRPETLSLVASHFANGARRRT-SRLAIPSMVNHEEDDEAQDGARGVRNALPKAQALEMVERIESLVA 3681
K+R G RQHLV L EAA+GPV PSALLP+L A+E+GP+ DL LEILQR+ G G S + T K ++++LLH +V EV+ SG+ K + + +GPP HL+SFL A + LP + +VF+K+LL L +S S ARK+S+ +L +L HG C TI PALA+VLR +R DGDATVRS AFD VA F+ + D S+ ++ +H +T TG+G G +G+ + T + I P+ GA N Q T+ E +G R +R+ + GPWAVGG L + LS A EALLTDGSKAVRAKA C LRIL+ HG I+ R C TTG+ P SS ILS V +GA A+LE A + GG T + S + G+ R A D AR LL LPC+ +P++L+ CY RC A G E A+ A AKRA+R++ FC DI L K +S +M E +G G + D A+ EG S SEVLCE+L+GV + + LL AL+AY+ D+ R G A PVLLRTL LL EA G + A + +R+R + G+ E +Q R L GL WRRLE+RMEDI+RD + GG ++G + G VE + + S +SE +ELL +F+LLATRSLLS E G ALE LVFP+ALSRRR ACDYVRLIGVLARENASFIA H+REQ++ AR + E+ + + DYMAGVSNREAM A+ +G RV D E + G + E VG R A A +L + CP +LC EALWA+SEYAVLS GLAA +VLPLAE LA DT E PQVR+ A+ VLTR ELA DEIAA C +L+DE+P LR+ +L RLG L+KESR CLFETYFTLDAEEAVKR +L L+ V AAPG+ LESLGSAL+RK ++ DS AAFFLSLV PTV SFEAA+VA RRGQL Q T+SLVA+HF+ GA+R S LA + + RG L KAQALEM RI SL +
Sbjct: 88 KKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGGGSIRSNDTS--KNAVIDLLHHVVAEVVTSGVTKGGRRGA-KGPPAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGHGRELGAQCGGTILDPALAAVLRLSRSDGDATVRSSAFDSVAKFIGEVESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAG---GGRGVTHGARAT--------ETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGHAHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVSSRVETILSAVAKGALAALEPLAGDNTGGPTI-QASLNSTGGGGRHRKAADTARALLVLPCIESSPVDLVMCYARCRVAPGVGEGEAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSA-NIDFAD-----TTEGASFPL-SEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGAAASAPVLLRTLALLAEATGHAKNGVDERNGARQPGGSSNRERLAGRSGQHGAGDEE--EQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYS---ARCLSRPGEEESAENGED---DYMAGVSNREAMG-------AATTAEEGEXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSRGDAQDEMQYRMAQQDGGKVEATVFREDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKESR-----------------------------------------CLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQG-LESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLATTASI----------AGRGGGAPLSKAQALEMAARIGSLTS 1258
BLAST of mRNA_F-serratus_M_contig882.20202.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 313 bits (802), Expect = 1.480e-90 Identity = 207/404 (51.24%), Postives = 247/404 (61.14%), Query Frame = 1
Query: 2641 MLSCYTPFLLAIAKCRVAESA------------------------------------DCAFEDPTEAPPG----------VHKIQSGH---ESVGPREAGANVSGA-------LDHARCPSSLCAEALWAMSEYAVLSPGLAAEKVLPLAETLARDTAEDPQVRDVAMLVLTRGELANDEIAASVCDMLDDEDPMLRQRLLRRLGCLMKESRIKITHLSRFALLLADVNEGVRRIAQGIFLDYLRPRPDAVCRCLFETYFTLDAEEAVKRSILVSLITVGERAAPGRARLESLGSALMRKTTDSCDSSAAFFLSLVLPTVPSFEAAQVALRRGQLTQVRPETLSLVASHFANGARRRT-SRLAIPSMVNHEEDDEAQDGARGVRNALPKAQALEMVERIESLVA 3681
MLSCYTPFLLAI + RVA++A A D EA G +H +Q E+ R+ G GA L + CP +LC EAL A+SEYAVLS GLAA +VLPLAE LA DT E PQVR+ A+ VLTR ELA DEIAA C +L+DE+P +R+ +L RLG LMKESRIK HLSRFALLL DV+EGVR+ AQ +F+D+L+PRPD VCRCLFET+FTLDAEEAVKR +L L+ V AAPG+ LESLG AL+RK ++ DS AAFFLSLV PTV SFEAA+VALRRGQL Q T+ LVA+HF+ GA+R S LAI + V RG L KAQALEM +I SL +
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQG-LESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRGAGSSLAITASV----------AGRGGGAPLSKAQALEMAAQIGSLAS 393
BLAST of mRNA_F-serratus_M_contig882.20202.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 243 bits (620), Expect = 1.150e-63 Identity = 269/840 (32.02%), Postives = 347/840 (41.31%), Query Frame = 1
Query: 367 SKELLALADSRWSAARKLSITVLGLVLEHG----GSCSETI-SPALASVLRFARVDGDATVRSLAFDCVADFV-----------VGAYDGILSNAGMSVGMENIASHFLHPFLCRCVTPSHTGTGRGEEVSNQGIVASVNSAGGGASNDGSTSNVGITP-KRGAPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHAQXXXXXXXXXXGTETSSVPD-------GEDDGKRPGQRRHEAIT-GPWAVGGVLFACLSVAGEALLTDGSKAVRAKATTCSLRILDAHGTDIQ-REKQCRVTTG-EVGERF-PNSSSSAARILS--------------------------------------------------------------------------------------MVVRGACASLEAFAASSCGGSTTHEGSSPGSADVGKKRGAVDAARKLLSLPCVTPTPIELLACYVRCGDASGAAESGAMAAATAKRAIRDVIVQRFCGDIDSLLKTISAVMNV-ENSEGTRIGPVKSFDGAEGWDDRHLEGRSLDSPSEVLCELLSGVSNKILTRLLGAALKAYSRLDDAEHSGRAGVGAPVLLRTLVLLGEAKGQTTAADASSAAESRDRRQEAHSECIVGERESLDQDRLLESGLGLSWRRLERRMEDIKRDGPRAKDG-----GNQGGVLSGGRSGDVEARYD---------------ETVVSAAVSECAELLCLFRLLATRSLLSHETGEALEDLVFPSALSRRRLIRPAVSLALALNEPHRLLLSSLAVLQDAAFSRSSTDVGRACDYVRLIGVLARENASFIARHVREQH 2481
+++LLAL +S S ARK+S+ VL +LEHG C TI PALA++LR AR DGDATVRS AFD +A F+ + D S+ ++ +H +T +G+ + T ++ I P +RGA + Q TS +G R GQRR ++ GPW +GG L + LS A EALLTDGSKAVRAKA CSL IL+ HG IQ R C T G E G P SS R LS V +GA +LEA A + GGSTT + S + G+ R A D AR LL LPCV P+P+EL+ CY RC ASG E A+ A AKRA+R++ F DI LLK +S +M E +G G + + A+ EG S S SEVL E+L+GV + + LL AL+AY+ D+ R G+T +S E E L R L GL WRRLE+RMEDI+RD R + G G++G + G +E + + AVSE +ELL +F+LLAT SLLS + ALE LVFP+ALSRRRLI VS ++ ++ L+ RACDYVRLIGVLARENASFIA HVREQ+
Sbjct: 11 TQDLLALTESSSSPARKMSLAVLAAILEHGRELGAQCGGTILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXX--RGVTHGARAT--------ETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNR-GQRREAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTT-QASLNSTGGGGRHRKAADTARALLILPCVEPSPVELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSA-NINFAD-----TTEGASF-SLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDR------------------DGETR----------------KYSNYNSDEEEQL---RTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI---VSRSIDIHNSFAFLVLVWG--------------SRACDYVRLIGVLARENASFIAAHVREQY 777 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig882.20202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig882.20202.1 >prot_F-serratus_M_contig882.20202.1 ID=prot_F-serratus_M_contig882.20202.1|Name=mRNA_F-serratus_M_contig882.20202.1|organism=Fucus serratus male|type=polypeptide|length=1267bp KQRGGCRQHLVETLVEAAAGPVRPSALLPMLCARESGPSVGDLALEILQRback to top mRNA from alignment at F-serratus_M_contig882:187438..197755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig882.20202.1 ID=mRNA_F-serratus_M_contig882.20202.1|Name=mRNA_F-serratus_M_contig882.20202.1|organism=Fucus serratus male|type=mRNA|length=10318bp|location=Sequence derived from alignment at F-serratus_M_contig882:187438..197755+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig882:187438..197755+ >mRNA_F-serratus_M_contig882.20202.1 ID=mRNA_F-serratus_M_contig882.20202.1|Name=mRNA_F-serratus_M_contig882.20202.1|organism=Fucus serratus male|type=CDS|length=7602bp|location=Sequence derived from alignment at F-serratus_M_contig882:187438..197755+ (Fucus serratus male)back to top |