mRNA_F-serratus_M_contig880.20188.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig880.20188.1
Unique NamemRNA_F-serratus_M_contig880.20188.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig880.20188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig880contigF-serratus_M_contig880:102260..102514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2e-07
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size256
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932567.9299634-CDS-F-serratus_M_contig880:102259..1025141622932567.9299634-CDS-F-serratus_M_contig880:102259..102514Fucus serratus maleCDSF-serratus_M_contig880 102260..102514 +
1690964369.6843743-CDS-F-serratus_M_contig880:102259..1025141690964369.6843743-CDS-F-serratus_M_contig880:102259..102514Fucus serratus maleCDSF-serratus_M_contig880 102260..102514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig880.20188.1prot_F-serratus_M_contig880.20188.1Fucus serratus malepolypeptideF-serratus_M_contig880 102260..102514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig880.20188.1

>prot_F-serratus_M_contig880.20188.1 ID=prot_F-serratus_M_contig880.20188.1|Name=mRNA_F-serratus_M_contig880.20188.1|organism=Fucus serratus male|type=polypeptide|length=85bp
MYEGLANKACSRQARFLSRIEVLRRYSDDEKLISSGGGLYSLVALWSAVK
KLDESLIVEEFYRKSLRDVTETKDMQNAGHLFELL
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mRNA from alignment at F-serratus_M_contig880:102260..102514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig880.20188.1 ID=mRNA_F-serratus_M_contig880.20188.1|Name=mRNA_F-serratus_M_contig880.20188.1|organism=Fucus serratus male|type=mRNA|length=255bp|location=Sequence derived from alignment at F-serratus_M_contig880:102260..102514+ (Fucus serratus male)
ATGTACGAGGGTCTCGCGAACAAGGCCTGCTCACGCCAAGCTCGGTTCTT
GTCTAGAATTGAAGTGCTTCGTAGGTACTCGGATGATGAGAAATTGATCA
GCAGCGGTGGTGGGCTTTACTCCCTCGTGGCCTTGTGGAGCGCGGTGAAG
AAGCTCGACGAGTCCCTTATCGTGGAGGAGTTCTACAGGAAATCCTTGAG
AGACGTGACTGAGACCAAAGACATGCAGAATGCTGGCCATTTGTTTGAGC
TTTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig880:102260..102514+

>mRNA_F-serratus_M_contig880.20188.1 ID=mRNA_F-serratus_M_contig880.20188.1|Name=mRNA_F-serratus_M_contig880.20188.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig880:102260..102514+ (Fucus serratus male)
ATGTACGAGGGTCTCGCGAACAAGGCCTGCTCACGCCAAGCTCGGTTCTT
GTCTAGAATTGAAGTGCTTCGTAGGTACTCGGATGATGAGAAATTGATCA
GCAGCGGTGGTGGGCTTTACTCCCTCGTGGCCTTGTGGAGCGCGGTGAAG
AAGCTCGACGAGTCCCTTATCGTGGAGGAGTTCTACAGGAAATCCTTGAG
AGACGTGACTGAGACCAAAGACATGCAGAATGCTGGCCATTTGTTTGAGC
TTTTGATGTACGAGGGTCTCGCGAACAAGGCCTGCTCACGCCAAGCTCGG
TTCTTGTCTAGAATTGAAGTGCTTCGTAGGTACTCGGATGATGAGAAATT
GATCAGCAGCGGTGGTGGGCTTTACTCCCTCGTGGCCTTGTGGAGCGCGG
TGAAGAAGCTCGACGAGTCCCTTATCGTGGAGGAGTTCTACAGGAAATCC
TTGAGAGACGTGACTGAGACCAAAGACATGCAGAATGCTGGCCATTTGTT
TGAGCTTTTG
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