mRNA_F-serratus_M_contig88.20181.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20181.1
Unique NamemRNA_F-serratus_M_contig88.20181.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:786421..790101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size672
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20181.1prot_F-serratus_M_contig88.20181.1Fucus serratus malepolypeptideF-serratus_M_contig88 786423..790101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932566.8418736-UTR-F-serratus_M_contig88:786420..7864221622932566.8418736-UTR-F-serratus_M_contig88:786420..786422Fucus serratus maleUTRF-serratus_M_contig88 786421..786422 +
1690964369.160752-UTR-F-serratus_M_contig88:786420..7864221690964369.160752-UTR-F-serratus_M_contig88:786420..786422Fucus serratus maleUTRF-serratus_M_contig88 786421..786422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932566.8659344-CDS-F-serratus_M_contig88:786422..7865401622932566.8659344-CDS-F-serratus_M_contig88:786422..786540Fucus serratus maleCDSF-serratus_M_contig88 786423..786540 +
1690964369.175943-CDS-F-serratus_M_contig88:786422..7865401690964369.175943-CDS-F-serratus_M_contig88:786422..786540Fucus serratus maleCDSF-serratus_M_contig88 786423..786540 +
1622932566.8851397-CDS-F-serratus_M_contig88:789550..7901011622932566.8851397-CDS-F-serratus_M_contig88:789550..790101Fucus serratus maleCDSF-serratus_M_contig88 789551..790101 +
1690964369.1839826-CDS-F-serratus_M_contig88:789550..7901011690964369.1839826-CDS-F-serratus_M_contig88:789550..790101Fucus serratus maleCDSF-serratus_M_contig88 789551..790101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20181.1

>prot_F-serratus_M_contig88.20181.1 ID=prot_F-serratus_M_contig88.20181.1|Name=mRNA_F-serratus_M_contig88.20181.1|organism=Fucus serratus male|type=polypeptide|length=223bp
MDSSCLSSSYPSGCPGEAVEKPESRASDEPADLVVPVAAGRRRVAPILSM
EALLTALNNVGSVGNEQPHQQWYVSTKHLQLVCLELCAACRAREASHMVV
TADTPPYFWRRRDVEDHSNERTFSRVPTLRVGAITWKISIALLSKGRRLV
EEASMARLRDVMVHGRQSFDEKAMCPQASQLMLEEGSSQELEEIVWPCSL
ERLSLTSGVNEVIDHVMWPARLQ
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mRNA from alignment at F-serratus_M_contig88:786421..790101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20181.1 ID=mRNA_F-serratus_M_contig88.20181.1|Name=mRNA_F-serratus_M_contig88.20181.1|organism=Fucus serratus male|type=mRNA|length=3681bp|location=Sequence derived from alignment at F-serratus_M_contig88:786421..790101+ (Fucus serratus male)
AGATGGACTCATCATGCTTGAGTTCATCATATCCGTCGGGGTGTCCAGGG
GAAGCTGTCGAGAAACCTGAATCGAGAGCATCGGACGAGCCGGCGGATTT
GGTGGTCCCCGTAGCTGCAGGTTTGTTTATTTATGTTAGGCTAACCTTTA
TGGTAAACAGAAACGACAGTGAAACACAGAAAAGTGAAATTTCTGTGGCG
AAATTTTTGTAAACGTTGCACTATGGGCCCCGTGCCACAGAAACGTAGCC
CTACAGAAATGGCGAATTTCTGTGGGAGGCTATTTTTCTCTTCCCACCTA
CAGAAATGAGGCTCATTTATGTAGGTGTCTCGACAAGTTTATTTCGCCAC
AGGAATGATTCACGCCTTCCAAGAACGATTGGGAGGTCGGGACTGTAGCA
TCCCTCCTATCAAATAGGTATCGGCAAAGAAGAGCTCGTGAGTGCTGTTG
TACGATGGGTGCCGAGCAGCAGTAGTTGTGTGATGATCGCCGCAGCAGCA
GATTTGGAGGAAAGTTATAGAAGCTGTTGAGGTGATGGGCCCGGGCAAGC
AGATTTAGAGGAAAATTATAAAAGCTGTTGAGTTGATGGACCCGGACCAG
CTGATCGCCGGCGGCGGGAGCGGTTGAATGGGTGGCGCCGGAGATGAGGC
AGGGACGGACTGCGTGTACGAGCGTCCGACCGCTCGCCATCGAAACGATG
TCGCTCTGCCCACTCTATTTGCGATGTACTCGCAATTAAGTACCAAACGA
CCCTGTCTCGCCGGACCAAATTCTCAGGCGCAATTCTCAGGCGCAAACGA
AGAGAGGGAAATATTAATTTTCCCTGTTCAGTTGACCACGAGCAGGACTG
GCAACCTTACCAGGTTGATGCATACTCTGCTATGTGCACATACTCGCACC
TGTCTTTGTGCGGTGATGGGGGGCCGGAAATGGCGGGGTTAATCCGATAT
GCTCCCCGTTTTTTTCTGTATTTTTTGTTTATCCCATAAACAACCAACTA
CAGTTTTTCCCCACGGATTTTTTGGCCACAGAAAGTACAAATTTCTGTAG
TTTGCGTTTCTGTTTTTACGTTTCACATTAAGGTTGGCGTTTTGTTTTTC
TGTGCTGTACCTTCATCTTATCATATTTTTGTCTTTGAATATACCAGTAA
TAGTTAAGGCGGCGTGAGGAGTGCAGTGCTCAACCGTGGTGCAAAGAAGC
GGTACTGTATAGATCATTGTGCGAAGCAATGTCTCGCTATCAACATACGA
ATTTTAGCTATGTGTAAATGGTCATCACATATAGCAAGAGAACGGATCAA
CCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTAAACAGGGAAAATGA
ATATTTTCCTGTCCCCGTTCGCGCCTGAGCATTTGGTCTCGCGAGACGGG
TTCAGCCGTCCCGTCCCGCGTCAGCCTTCCAATTCTCCATACCCAGGCTG
AATCTGCTTACTCACGGAATTCCTCCCGAATTCCGCGGTGGCGTTCATTT
ATTTTTTTAAACCGCCAAACGCCATCGGTTCACTGCCGATATTCCGCCGG
TACAGGGCCAGTAGTCCTCAAGGTAGTTCCAGTAACGGTTGCTGCACCAA
TTAACGTGCGCCTCTCTTTTCCAAGACCCCCTATACTGTTATTAGTATGA
AGTGGGCATGTTGAAAGTATCCAAGACAAACGTGAAATGCTTGAAATACC
ACCGTTTGAAGGTCAAGCGATTGTCATTTTGATAGTCTTGTACCCCCCCT
TAAGTAGCCTGGCAGACATATGCACGCCTTATTTTCTGTGAACTTTTCGA
TAAAAAAATCTGGCGGGATTGTTTGCAGCCATGGCTCCTACCTGGTACGT
CTTACTGGTGTTTCGGGATGGGTCGATACATGTGATACCACCCCAGCGAG
GTGGTGCATGGAATGTGAAAACGTTTTGTGGAAATGACGAGTACACTGCT
GGGCATATTGATCGTTGTTCTAGGAAAAGTTTCCGGTCGGCTTGACAAAT
AGTGCGCCTGCCGGCGCGAGGCTGGACATCTTCCAACCGTTTCGAGACCT
TAACCCTTTTGGTACTATCGGTCTGACAACGGCTATTTTTTTCTTCTTGA
CAGTCCTGTGATACTCGCGCTACTTTGCATGGGCCAGCCACCATGATCAT
TCATTTTACAGTATACTGTTTACATATCCCAAGTAGTATACGCCTACTTC
GTCTCTAGCCGTTATTGTTAAGCGGTTGTTAGTACCAAACTAGTACGACA
TTTTTCAGGAATGTTATAGTAAAGTCAAGTGAAGAACAAAGTTGGTTTGG
GGTTTACATTTTGTACCGTGCACAGGTTTGCGGGGTTGATTCGTGTTATA
TCCTTGCTGAGCCGCATCTTGGGATTGCTTTTAGTTTGGGAAGGTACCGT
ACTCGGGCTCCTGATCTCGCTGCCCAATCAAGGCTAGAAAATAAACAGGC
GGTCGACCGCCTGTTAAGCCCTCTCAAGTACCAAAGGGGTTAAACCGTTT
TTTTTCGTTCTCGACGAGTGCGAACAAAAGCGATTTCCCAGACGTTTTTG
CGCACGCGTCAGTCAATTGGGAAATCAAACCCTTGGATGTAATGTTGAAA
ATGAGCTCTAATATTACATGACTGTATTACTCCCGGTGGTGGTAAGACAT
GCCGAGCGGTGTGTGGCTGCTTTGACGTCGCCCCAGGGTCTCTCGAGGAT
AGTATAATAGTATCTAATAGTACCACGCCAGGTATAGTATATACTCCTGA
TCCCAAGATGAAGTTTAGAATTACGGCCGGACGACATGGTAGTTTGCATT
ACATGAGAATGTTTTATGCCGGTGGGCCGGGCATTTCTGAGGCTCCGGGG
GCAGAGCTCCGTTTCAACACACCTTGTGTTGAGGCCCGCTTTCGATCGAG
TTGGTATTTAGTAGATTTAGTCGTGAAACGTTTCCTTTTTCACATGGCTT
GTCTCCAAACGGTTTGCCTCACTGTTTTTCGATAACGTTTCACTGAAAAT
GCTGTTTCGACAGGCGTAGAATTCTTTGCAGCTGCCATGCCCGAAATTCG
CGCGGCAACCCTTCACCACTCCGCTATCCCTTGTCTTCCCTTCTCTCCTG
CTGTCGTTTGTTTTGTTTGTCTTGGATAAGGGCGGCGACGTGTAGCACCC
ATTCTATCCATGGAAGCCTTGCTTACAGCGCTCAACAACGTCGGGAGCGT
CGGGAACGAACAGCCACATCAGCAATGGTATGTATCCACTAAACATCTGC
AGCTCGTGTGTCTGGAGCTTTGCGCTGCATGTCGCGCTCGCGAGGCATCA
CACATGGTTGTCACAGCGGACACGCCGCCCTACTTCTGGCGACGGCGAGA
CGTCGAAGATCACTCGAATGAACGCACCTTCTCTCGCGTTCCAACGCTGA
GAGTTGGCGCAATCACTTGGAAGATATCGATTGCCCTGCTATCGAAGGGC
AGGCGGCTTGTCGAGGAGGCATCGATGGCGCGATTGCGTGATGTTATGGT
TCACGGACGCCAAAGTTTCGACGAGAAGGCGATGTGTCCTCAGGCTTCTC
AGCTGATGCTTGAGGAGGGTTCCAGTCAGGAACTGGAAGAGATCGTTTGG
CCGTGTTCACTCGAGCGGCTGTCTCTAACGTCGGGCGTTAATGAGGTCAT
CGACCACGTCATGTGGCCGGCCAGGCTCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:786421..790101+

>mRNA_F-serratus_M_contig88.20181.1 ID=mRNA_F-serratus_M_contig88.20181.1|Name=mRNA_F-serratus_M_contig88.20181.1|organism=Fucus serratus male|type=CDS|length=1338bp|location=Sequence derived from alignment at F-serratus_M_contig88:786421..790101+ (Fucus serratus male)
ATGGACTCATCATGCTTGAGTTCATCATATCCGTCGGGGTGTCCAGGGGA
AGCTGTCGAGAAACCTGAATCGAGAGCATCGGACGAGCCGGCGGATTTGG
TGGTCCCCGTAGCTGCAGATGGACTCATCATGCTTGAGTTCATCATATCC
GTCGGGGTGTCCAGGGGAAGCTGTCGAGAAACCTGAATCGAGAGCATCGG
ACGAGCCGGCGGATTTGGTGGTCCCCGTAGCTGCAGGGCGGCGACGTGTA
GCACCCATTCTATCCATGGAAGCCTTGCTTACAGCGCTCAACAACGTCGG
GAGCGTCGGGAACGAACAGCCACATCAGCAATGGTATGTATCCACTAAAC
ATCTGCAGCTCGTGTGTCTGGAGCTTTGCGCTGCATGTCGCGCTCGCGAG
GCATCACACATGGTTGTCACAGCGGACACGCCGCCCTACTTCTGGCGACG
GCGAGACGTCGAAGATCACTCGAATGAACGCACCTTCTCTCGCGTTCCAA
CGCTGAGAGTTGGCGCAATCACTTGGAAGATATCGATTGCCCTGCTATCG
AAGGGCAGGCGGCTTGTCGAGGAGGCATCGATGGCGCGATTGCGTGATGT
TATGGTTCACGGACGCCAAAGTTTCGACGAGAAGGCGATGTGTCCTCAGG
CTTCTCAGCTGATGCTTGAGGAGGGTTCCAGTCAGGAACTGGAAGAGATC
GTTTGGCCGTGTTCACTCGAGCGGCTGTCTCTAACGTCGGGCGTTAATGA
GGTCATCGACCACGTCATGTGGCCGGCCAGGCTCCAGGGCGGCGACGTGT
AGCACCCATTCTATCCATGGAAGCCTTGCTTACAGCGCTCAACAACGTCG
GGAGCGTCGGGAACGAACAGCCACATCAGCAATGGTATGTATCCACTAAA
CATCTGCAGCTCGTGTGTCTGGAGCTTTGCGCTGCATGTCGCGCTCGCGA
GGCATCACACATGGTTGTCACAGCGGACACGCCGCCCTACTTCTGGCGAC
GGCGAGACGTCGAAGATCACTCGAATGAACGCACCTTCTCTCGCGTTCCA
ACGCTGAGAGTTGGCGCAATCACTTGGAAGATATCGATTGCCCTGCTATC
GAAGGGCAGGCGGCTTGTCGAGGAGGCATCGATGGCGCGATTGCGTGATG
TTATGGTTCACGGACGCCAAAGTTTCGACGAGAAGGCGATGTGTCCTCAG
GCTTCTCAGCTGATGCTTGAGGAGGGTTCCAGTCAGGAACTGGAAGAGAT
CGTTTGGCCGTGTTCACTCGAGCGGCTGTCTCTAACGTCGGGCGTTAATG
AGGTCATCGACCACGTCATGTGGCCGGCCAGGCTCCAG
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