mRNA_F-serratus_M_contig88.20180.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: D8LTZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ9_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 2.910e-134 Identity = 223/426 (52.35%), Postives = 288/426 (67.61%), Query Frame = 2
Query: 158 KLRNATLTVTMLTGVVDPPKCGPKVYVEIRLSD-QIRRFSPVEVDSSSGEFSYDGLDG--VQFNDNTLEQIFDEHLFVVLRSWDTQTSEWLDAAQIVVPVRTIDMTVTT--------------DREFRSFVLEPV--AENFRTDEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPAL---ISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDKLGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVNGRPGLSRPQQVFHSNGDVGAGGVQYPSE 1369
K NA ++V++L G VDP K G KVYVE+RL D ++R SPV VD +G+FSY+ G FN N LE+IFDE L +VLRSW TS W+D+A+I++ VR+I + T DR+F F LEPV ++F+T + P+LVLSATL+SPFRP +E VAR+L+G ST D A+DTVS Q T+RV PY+TS+ AL I G++ L SLP+ VLG+ G PLLVP+ + A G L VW+ SR GR WVQ +PVYD++GR +PEVLYP+GP PSPAR+ + L PT MW KL +S+ VD IG +SY VP+LGE DL+WAP+SYLLIDAMYH SSPWAG+ G +EELLPFTDI+PTATLAWMKEY+P M+ + R + Q V+HS+ +VG GGV +PS+
Sbjct: 7 KEENAIVSVSVLNGKVDPLKWGTKVYVEVRLGDLHVQRLSPVSVDPVTGDFSYESATGNITVFNSNILEEIFDETLHIVLRSWHP-TSNWVDSAKILISVRSISIDSTVRPTGVDMGDESGEADRDFMVFRLEPVPGGDSFQTADESVPNLVLSATLRSPFRPPVESVARLLQGCASTVDLALDTVSLQ-----TERVAPYLTSQAALVPTIPAGIVVLASLPLLCVLGVAGLPLLVPMLIVVAAVGGVGALLTAAVWLFSRGGRAWVQRAVRPVYDRVGRDNPEVLYPVGPGPSPARIAQCLVPTGMWSKLAMSIAVDTIGCTSYIVPILGESADLLWAPVSYLLIDAMYHGSSPWAGVFGAMEELLPFTDIIPTATLAWMKEYLPQMLQGLSAADQNR----QEQHVYHSDDNVGPGGVHFPSQ 422
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: W7TYL2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYL2_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.580e-41 Identity = 124/368 (33.70%), Postives = 187/368 (50.82%), Query Frame = 2
Query: 155 SKLRNATLTVTMLTGVVDPPKCGPKVYVEIRLSDQIRRFSPVEVDSSSGEFSYDGLDGVQFNDNTLEQIFDEHLFVVLRSWDTQTSEWLDAAQIVVPVRTIDMTVTTDREFRSFVLEPVAENFRTDEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSR---PALISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDKLGRQ--DPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKE 1243
S L+ L V LTG GP +YVE++L +Q R V+S + + V F LE ++ E+L L + +++ + Q +PV+ + M F + PVA + P++ LS L P R F++ ++ Y ST D +D + +Q PYV ++ P L+ G++ L + P V +G P+ +P+ + V + + + SR GR V+ + PV KL ++LY GPRPSP R+ ++ AP W +LV SLI+D IG SSY +PVLGE DL WAP+ + + AMY +SP+A +G +EELLPFTDI+PTATLAW +E
Sbjct: 93 SSLQVEVLEVKDLTGA----SAGP-LYVELQLGEQRLR---ANVNSRRAMAAGARPEAVVFTQKKLEDLYKENLKFKLINKESK----MVLGQSQLPVKKL-MIGKKFEAFFNLAPPPVAGKRAAEVHAGPAIRLSVELMGPLRKEFRFLSDVVSKYYSTVDRTLDGAAAAGHAAQ-----PYVANKWTLPLLVPFGVLLLAASPFMGVALTIGLPVFLPLLLLGLVAGLTMLIASIILALSSRAGRGRVEALVDPVIRKLTHTATGQQLLYETGPRPSPLRIAKTFAPKGRWERLVTSLILDTIGASSYLLPVLGEFTDLAWAPLFAVALHAMYSETSPYAHYVGLVEELLPFTDIIPTATLAWFRE 442
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A836CGD0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD0_9STRA) HSP 1 Score: 151 bits (382), Expect = 6.250e-37 Identity = 104/291 (35.74%), Postives = 157/291 (53.95%), Query Frame = 2
Query: 569 LQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPAL---ISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVW----VGSRNGR---------------------------------PWVQ-LITKPVYDKLGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVNGRPGLSRPQQV 1318
L RP + + + L Y + AD A D V+ ++ P++T+R A + +G L SLP L +V PL++P+ AV A+AG+ +V T++ + SRNGR P ++ LI + D LG++ ++Y GPRP+P +V+R +AP + WPKL S+ VDFIG +SY +PVLGE+ D+ WAP+S +LI AMY + P+ +G EE+LPFTDI+PTA+LAW +E+ P +IH SR+ G + P+ V
Sbjct: 101 LHGELRPEVGALLKFLGHYTAVADVAADQVAQVG-----EKARPFITARAAAAAAVPLGAAALASLP----LLLVAAPLVLPL----AVVAAAGIAVVATLFALLALSSRNGRLQRXXXXXXXXRAAPSLXXXXXXXXXXVRALLMPKIEPLIQEMQRDVLGQR---IMYNTGPRPTPMQVLRYVAPKSKWPKLAASVAVDFIGCTSYALPVLGEVGDVAWAPLSAVLIAAMYDDKQPYMAYMGFAEEILPFTDIIPTASLAWAREFAPELIHMIGSRLRGGAVEATPEHV 375
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A7S2VHH7_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHH7_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.550e-34 Identity = 99/340 (29.12%), Postives = 175/340 (51.47%), Query Frame = 2
Query: 380 VVLRSWDTQTSEWLDAAQIVVPVRTIDMTV-TTDREFRSFVLEPVAENFRT----------------DEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGST----ADSAVDTVSHQASHSQTKRVVPYVTSRPALISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDK--LGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVNGRPGLSRPQQVFHSN 1330
V+ S T T ++ DA++ + TI T+ D ++ L+PV+++ T +P+L L L+ P+RP + V ++ G+ + +D+ V VS + +++ T A +++G +LP+ + I+G P +PI + + + +V+ +R+GR +Q + +P Y + + ++Y +GPRPSP + ++ P+ M KL++SL++D IG +SY +P+ GE DL WAPMS +L+ A+Y + P I IEELLPFTD +P+ATL W+KE+ P +I A+ R+ R ++ +N
Sbjct: 111 VLFESTVTFTLKYPDASKNLTSTCTIHKTLRVNDTQWLILNLDPVSDSAGTRTPLKSSASRISTSSSSNEQQPTLRLKLRLEGPYRPEIAAVVNLMNGWFTAVDVISDNTVGFVSDIPKNVPAVKLLLVPTVPLATVAIG-----ALPILGGIMIIGIPFFLPIILIVLTLGLSLGAIGSSVYFSTRSGRTRIQHVAEPSYQTFLMTKTGQRIIYDVGPRPSPQSLAHAVLPSDMIGKLIVSLVIDAIGSASYLIPLAGEGFDLTWAPMSMILVGALYDDVMPNLKYIALIEELLPFTDFIPSATLGWVKEFGPNIIDEAKGRMGDAKRAGRRERDALAN 445
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: B8C7V5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7V5_THAPS) HSP 1 Score: 146 bits (369), Expect = 2.170e-34 Identity = 92/268 (34.33%), Postives = 145/268 (54.10%), Query Frame = 2
Query: 545 PSLVLSATLQSPFRPSLEFVARMLRG-YGST---ADSAVDTVSHQASHSQTKRVVPYVTSRPALISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDK--LGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVNGRPGLSRPQQVFHSN 1330
P+L L L+ P+RP + V ++ +G+ +D+AV TVS K V + + + + +LP+ + I+G P +PI + A+ ++ +R GR +Q + +P Y + + ++Y +GPRPSP + ++ PT M KLV+SL+VDFIG +SY +PVLGE DL WAPMS +L+ AMY + P + IEELLPFTDI+P+ATL W+KE+ P + R R+ +R ++ +N
Sbjct: 203 PTLRLKLRLEGPYRPEISAVIKLANSWFGAVDIISDTAVGTVSGLV-RDLPKNVPAVKLLLVPTVPIATVAVAALPILGGVLIIGIPFFLPIVLIILAAAATIGAAGSALYFSTREGRTKIQHVAEPTYQTFLMTKTGQRIVYDVGPRPSPQSLAHAVLPTDMIGKLVVSLVVDFIGSASYLLPVLGEGFDLTWAPMSMILVGAMYDDVMPNLKYVALIEELLPFTDILPSATLGWVKEFGPNIFEEGRKRMGDSKVAARRERDALAN 469
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A7S4HQ87_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQ87_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.050e-31 Identity = 85/253 (33.60%), Postives = 131/253 (51.78%), Query Frame = 2
Query: 545 PSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVD----TVSHQASHSQTKRVVPYVTSRPALISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDKLGRQDP--EVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVN 1285
P+L + L+ PFRP + V M + + T D D TV + K + P + GL + LPV + I+G P +P+ + FA++ + G+++V +R+GR + PVY LY GPRPSP + R + P +M KL+ SL++D IG SSY +P++GE DL WAP +L+ AMY + SP + EE+LPFTD++P+AT W++E+ P + +VN
Sbjct: 160 PTLRMQMRLEGPFRPEISTVVGMSKTWFGTVDGVSDAAGSTVRSLTTDLPGKVPALRILLIPTVPLAGL-GVALLPVGAGILIIGLPFFLPLLVVLITFAASVGAIFGSLYVSTRDGRAKIAPFVTPVYSTFASTPAGQSFLYETGPRPSPVTLARCVLPDSMTGKLIASLLIDLIGSSSYLLPLVGEAFDLSWAPTQAVLVAAMYDDVSPSLKYVAFAEEILPFTDLIPSATYGWLREFGPGFFDEGKKKVN 411
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: K0RA89_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA89_THAOC) HSP 1 Score: 138 bits (347), Expect = 2.240e-31 Identity = 86/270 (31.85%), Postives = 142/270 (52.59%), Query Frame = 2
Query: 503 EPVAENFRTDEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPAL-------ISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDK--LGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVN 1285
E A + + P+L L ++ P+RP + V + + AVD V+ + T V + PA+ + + I +V+LP+ +GIV P L+P+ + + + G ++ +R GR +Q + +P Y + + ++Y +GPRPSP + ++ P M KLV SL+VD +G +SY +P+ GE DL WAP+S +L+ AMY + P + +EELLP TD +P+ATL W+KE+ P +I+ SR+N
Sbjct: 200 ESRASDSEKGDESTPTLRLKLRVEGPYRPEVAAVINLANSWF----HAVDAVTDATVGTTTGFVRDIPKNFPAVQLLLVPTVPLATIGVVALPIVAGVGIVCLPFLLPVLMLLLTIGAISGAIGGGLYFSTREGRTRIQHVAEPSYQTFLMTKTGQRIVYDVGPRPSPQALAHAVLPQDMMGKLVASLLVDLVGSASYLIPLAGEAFDLTWAPVSMVLVGAMYDDVMPNLKYVALMEELLPLTDWIPSATLGWVKEFGPGIINIGVSRMN 465
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A7S4QJI5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJI5_9STRA) HSP 1 Score: 135 bits (341), Expect = 3.030e-31 Identity = 84/260 (32.31%), Postives = 142/260 (54.62%), Query Frame = 2
Query: 530 DEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPALIS---MGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWV------QLITKPVYDKLGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRV 1282
+E P+L + L P+RP + + + + S DS VS ++ T+ Y+ ++ LI + +V PV T + +VG P +P+ ASA +V ++ + GR + L+ ++ G++ ++Y IGPRP+P + +S+ PT +W KLV+SL++DF+G SSY +P+ GE +DL WAP+ +LI AMY + SP + +EE+LPFTD++P+ATL W +E+ P + + +V
Sbjct: 115 EEQATPTLRIRLLLSGPYRPEISALLSIGSSWFSIVDSTQSNVSSVFANFPTQTF--YLYNKYLLIPAVPVAAAAVVLTPVITGVLLVGLPFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQR---LVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGWTREFGPQLWMESMEKV 369
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A7S1ZMQ1_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMQ1_TRICV) HSP 1 Score: 135 bits (341), Expect = 3.510e-31 Identity = 83/261 (31.80%), Postives = 132/261 (50.57%), Query Frame = 2
Query: 530 DEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPAL-------ISMGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWVQLITKPVYDKLGRQDP--EVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRVN 1285
+E P+L + A L+ P+RP + V + + T D+ D A V PAL + + + +V+LP+A + +VG P +P+ + A+ G ++ +R+GR V + P Y+ L +Y G RPSP + ++ P M KL+LSL++D +G SSY +PV+GE DL WAP +LI AMY SP + EE+LPFTD++P+AT W+++Y ++ + RVN
Sbjct: 121 EEEHPPTLRVKARLEGPYRPEVHAVVKASEAWFGTVDNVTDAAGALAK----SLTVDLPDKVPALKVLLIPAVPLAGLGVVALPIAAGVLVVGLPFFLPLLVVFGALAATIAAAAGGLYFSTRDGRARVGPLIGPAYEALAATSTGQRFVYETGDRPSPVALAEAVVPRDMAGKLILSLLIDLVGSSSYLLPVVGEAFDLAWAPTQSVLIAAMYDEVSPNLKYVSFAEEILPFTDVIPSATYGWLRQYGTGFLNEGKRRVN 377
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Match: A0A7S4QI85_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QI85_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.470e-30 Identity = 84/260 (32.31%), Postives = 142/260 (54.62%), Query Frame = 2
Query: 530 DEMDKPSLVLSATLQSPFRPSLEFVARMLRGYGSTADSAVDTVSHQASHSQTKRVVPYVTSRPALIS---MGLITLVSLPVATVLGIVGFPLLVPIFFMCAVFASAGMFLVGTVWVGSRNGRPWV------QLITKPVYDKLGRQDPEVLYPIGPRPSPARVIRSLAPTTMWPKLVLSLIVDFIGFSSYFVPVLGELMDLVWAPMSYLLIDAMYHNSSPWAGIIGGIEELLPFTDIVPTATLAWMKEYIPVMIHRARSRV 1282
+E P+L + L P+RP + + + + S DS VS ++ T+ Y+ ++ LI + +V PV T + +VG P +P+ ASA +V ++ + GR + L+ ++ G++ ++Y IGPRP+P + +S+ PT +W KLV+SL++DF+G SSY +P+ GE +DL WAP+ +LI AMY + SP + +EE+LPFTD++P+ATL W +E+ P + + +V
Sbjct: 216 EEQATPTLRIRLLLSGPYRPEISALLSIGSSWFSIVDSTQSNVSSVFANFPTQTF--YLYNKYLLIPAVPVAAAAVVLTPVITGVLLVGLPFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQR---LVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGWTREFGPQLWMESMEKV 470 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig88.20180.1 >prot_F-serratus_M_contig88.20180.1 ID=prot_F-serratus_M_contig88.20180.1|Name=mRNA_F-serratus_M_contig88.20180.1|organism=Fucus serratus male|type=polypeptide|length=428bp MSSSESSDDVGEVSTEMQSKLRNATLTVTMLTGVVDPPKCGPKVYVEIRLback to top mRNA from alignment at F-serratus_M_contig88:756463..768435- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig88.20180.1 ID=mRNA_F-serratus_M_contig88.20180.1|Name=mRNA_F-serratus_M_contig88.20180.1|organism=Fucus serratus male|type=mRNA|length=11973bp|location=Sequence derived from alignment at F-serratus_M_contig88:756463..768435- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig88:756463..768435- >mRNA_F-serratus_M_contig88.20180.1 ID=mRNA_F-serratus_M_contig88.20180.1|Name=mRNA_F-serratus_M_contig88.20180.1|organism=Fucus serratus male|type=CDS|length=2568bp|location=Sequence derived from alignment at F-serratus_M_contig88:756463..768435- (Fucus serratus male)back to top |