prot_F-serratus_M_contig88.20168.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig88.20168.1
Unique Name	prot_F-serratus_M_contig88.20168.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	308

Homology

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BLAST of mRNA_F-serratus_M_contig88.20168.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 9.950e-69
Identity = 131/261 (50.19%), Postives = 159/261 (60.92%), Query Frame = 0

Query:    3 RGGEAGLGPWAVFALLLISSAVVLGVEWRKECDGKLKSWLLIAVCVTAVCGILGAAFHGTNDSSRPLRFLDQDGDDYADXXXXXXXXID-GESATTGSDRGGSRGMDLGPL---GTPVRTTAQSGLPVLKEGEQLSTNSDVNGVSGAAAGTVEEEAVEHHAIDDGITSAHGSSVSAQFATRASSSLQRQYFGPGPKVFPDAIFLVLVLSQWFLAAWSVVGAILYFRLFEPGRTCPTLLRHWTLLVVIIGFLSCLLAVCYSG 259
            RG + G+G WA   LLL+SS+VVLG++W KECDG L++WLL  VCVTA+C  LGA FHG  + +RP RFLD D     D        I+   S+  G   G +   ++GP    G   R+  +   P   E    S    VNG  G A G    +++   +I  G+ S     ++AQ     SSSLQ +YFGPGPKVFPD IF +LV+SQWFLA WSVVGA LYFRLF   RTC  LLRHWTLLVVIIGFLSCLLAVC  G
Sbjct:    4 RGMDTGVGSWAALVLLLVSSSVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLDDD-----DAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEDANGNGKRSDIRITPPFKMEEGGGSGGKGVNG-GGMAGGEERRDSMGDESIVSGVPSTISHRLAAQ-----SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWG 253

[Close]

BLAST of mRNA_F-serratus_M_contig88.20168.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.300e-56
Identity = 123/256 (48.05%), Postives = 148/256 (57.81%), Query Frame = 0

Query:   54 ILGAAFHGTNDSSRPLRFLDQDGDDYADXXXXXXXXIDGESATTGSDRGGSRGM----DLGPL-----GTPVRTTAQSGLPVLKEGEQLSTNSDVNGVSGAAAGTVEEEAVEHHAIDDGITSAHGSSVSAQFATRASSSLQRQYFGPGPKVFPDAIFLVLVLSQWFLAAWSVVGAILYFRLFEPGRTCPTLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGSPFEIGRN-TGSGRRERGAFHGDLSADSNSSDVG 299
            +LGA FHG  D +RP RFLD D     D         D  + +  S  GG+ G     ++GP      G+ +R T     P   E         VNG    A G    +++   +I  G+ S     ++AQ     SSSLQ +YFGPGPKVFPD IF +LV+SQWFLA WSVVGA LYFRLF   R C  LLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLG+PF   R   GSG R++  FH DL + S+S+  G
Sbjct:    1 MLGATFHGRGDGTRPSRFLDDDAWGVDD---------DSINVSVSSAAGGTGGRASPPEMGPEHTNGNGSDIRITP----PFKMEEGGGDGGKRVNGXX-MAGGEERRDSMGDESIVSGVPSTISHRLAAQ-----SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQ--FHADLPSSSDSTSTG 235

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig88.20168.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig88.20168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FV38_ECTSI	9.950e-69	50.19	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0Y0_9PHAE	1.300e-56	48.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..59
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 235..260
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 224..234
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 261..307
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 199..223
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..198
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..27 score: 0.711
None	No IPR available	TMHMM	TMhelix		coord: 239..261
None	No IPR available	TMHMM	TMhelix		coord: 40..62
None	No IPR available	TMHMM	TMhelix		coord: 10..28
None	No IPR available	TMHMM	TMhelix		coord: 204..226

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig88	contig	F-serratus_M_contig88:585763..605757 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig88.20168.1	mRNA_F-serratus_M_contig88.20168.1	Fucus serratus male	mRNA	F-serratus_M_contig88 584692..607334 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig88.20168.1 ID=prot_F-serratus_M_contig88.20168.1|Name=mRNA_F-serratus_M_contig88.20168.1|organism=Fucus serratus male|type=polypeptide|length=308bp
MARGGEAGLGPWAVFALLLISSAVVLGVEWRKECDGKLKSWLLIAVCVTA
VCGILGAAFHGTNDSSRPLRFLDQDGDDYADDDYDDESYIDGESATTGSD
RGGSRGMDLGPLGTPVRTTAQSGLPVLKEGEQLSTNSDVNGVSGAAAGTV
EEEAVEHHAIDDGITSAHGSSVSAQFATRASSSLQRQYFGPGPKVFPDAI
FLVLVLSQWFLAAWSVVGAILYFRLFEPGRTCPTLLRHWTLLVVIIGFLS
CLLAVCYSGIMCCMLGSPFEIGRNTGSGRRERGAFHGDLSADSNSSDVGV
VDPAGMI*