mRNA_F-serratus_M_contig88.20160.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.160e-42 Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query: 3 DPCSNGENTSMLACSLCAETGV-RGGAMKMVTP-GVERSRSWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDIKVPLD 416
D C GE+ S+ C LC ET + +GGAMK V G + WVHV C++WIPEV S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D+ G++ RS+ + +L+V+C+ H D+ LD
Sbjct: 45 DVCEAGEDASVTVCELCKETNLSKGGAMKQVLGNGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDR--GIINRSISVQSHLHVFCQDHKADVISSLD 182
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.920e-34 Identity = 55/106 (51.89%), Postives = 80/106 (75.47%), Query Frame = 3
Query: 99 GVERSRSWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDIKVPLD 416
G + WVHV C++WIPEV S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D+ G++ RS+ + +L+V+C+ H D+ LD
Sbjct: 8 GKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDR--GIINRSISVQSHLHVFCQDHKADVISSLD 111
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A482RWD5_9ARCH (PHD-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD5_9ARCH) HSP 1 Score: 93.6 bits (231), Expect = 9.270e-21 Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 3
Query: 9 CSNGENTSMLACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVG--SDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKN-NGLLFRSLDTKGNLNVYCRKHIGDIKVPL 413
C G + + ++C LC+ +GGA K + ++ W H C+ WIPE++ ++++ ++ + R LKC LC ++G CVQC+ GRC++A HPWC LHT + + R D ++CR H + P+
Sbjct: 58 CRVGLDPTTVSCELCS---YKGGAYKPI----DKPHKWAHPLCSTWIPELYEEHKANKVPIINTSKLDSKRFKLKCALCKQKGACVQCSSGRCVIAAHPWCALHTPQGFTRRIVRGPDDLPLWQIFCRTHASGVSEPV 188
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A8J5B3H7_9ASCO (NuA3 HAT complex component NTO1 n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5B3H7_9ASCO) HSP 1 Score: 84.0 bits (206), Expect = 3.630e-16 Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query: 39 ACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDELEPV-HLEYVPKDRKTLKCVLCGKR-GVCVQCAGGRCLVAYHPWCL----LHTDKNNGLLFRSLDTKGNLNVYCRKHIGD 398
+C C + GA KM T ++W HV C +WIPEV +G +EP+ H+ VP+ R L C +C +R G C+QCA G C+ A+H C L + +G+ ++ G++ YC H GD
Sbjct: 273 SCIFCPS---QVGAFKMTT-----QKTWGHVICALWIPEVKIGGRNMEPISHVRDVPRSRWKLHCYICKQRMGACIQCARGTCVQAFHVTCARRAGLQMEMTHGVQ-GAIFEPGSMRAYCHNHGGD 389
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL) HSP 1 Score: 83.6 bits (205), Expect = 5.250e-16 Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 3
Query: 51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVF---VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
CA + GGA+++ ++ W HV C WIPE++ G+ + E V + + K R TL+C++CG RG C+QC GRC A+H C + +LF + + +CR H+ D+
Sbjct: 58 CAVCPIAGGALRLT----DQCDVWCHVLCLNWIPELYHSLTGAMD-EAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSS--ILFTGYNLQNQQVYHCRTHLSDV 170
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN) HSP 1 Score: 83.2 bits (204), Expect = 7.160e-16 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 3
Query: 51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
CA + GGA+++ ++ W HV C WIPE++ + E V + K R TL+CV+CG RG C+QC GRC A+H C + + L+F +++ +C+ H+ D+
Sbjct: 74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPSS--LVFTGYNSQNQQVYHCKTHLSDV 186
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: D0MU88_PHYIT (Kinesin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU88_PHYIT) HSP 1 Score: 83.2 bits (204), Expect = 7.320e-16 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 3
Query: 51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
CA + GGA+++ ++ W HV C WIPE++ + E V + K R TL+CV+CG RG C+QC GRC A+H C + + L+F +++ +C+ H+ D+
Sbjct: 74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPSS--LVFTGYNSQNQQVYHCKTHLSDV 186
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A484E017_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E017_BRELC) HSP 1 Score: 82.8 bits (203), Expect = 9.760e-16 Identity = 38/119 (31.93%), Postives = 62/119 (52.10%), Query Frame = 3
Query: 51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVF--VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
CA + GGA+++ ++ W H+ C WIPE++ + E V + + K R TL+C++CG RG C+QC GRC A+H C + LLF + + +C+ H+ D+
Sbjct: 71 CAVCPIAGGALRLT----DQRDVWCHLLCINWIPELYHSLSGAMDEAVQISLLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSS--LLFTGYNAQNQQVYHCKTHLSDV 183
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 9.950e-16 Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 3
Query: 42 CSLCAETGVRGGAMKMVT-PGVERSRSWVHVCCTMWIPEVFVG-SDEL-EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
C +C V GGA++ + PGV WVHV C WIPE+ + EL + V++ + + R+TL+C++CG+RG C+QC GRC A+H C + + L+F + +C+ H+ D+
Sbjct: 95 CVVCP---VEGGALRRTSQPGV-----WVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPST--LIFTGYNGANQQVYHCKAHLADV 207
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: K3WLS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLS9_GLOUD) HSP 1 Score: 81.6 bits (200), Expect = 2.480e-15 Identity = 39/123 (31.71%), Postives = 70/123 (56.91%), Query Frame = 3
Query: 42 CSLCAETGVRGGAMKMVT-PGVERSRSWVHVCCTMWIPEVF--VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
C++C + GGA++ + PGV W HV C WIPE+ + + E V++ + + R++L+C++CG+RG C+QC GRC A+H C + + + L+F + + +C+ H+ D+
Sbjct: 94 CAICP---IEGGALRRTSQPGV-----WSHVLCINWIPELSHSLTGEMNEEVNIALLDRSRESLRCLVCGQRGGCIQCISGRCTRAFHVLCAMRSPAS--LIFTGYNGENQQVYHCKTHLSDV 206 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig88.20160.1 >prot_F-serratus_M_contig88.20160.1 ID=prot_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=polypeptide|length=128bp MLACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDELEback to top mRNA from alignment at F-serratus_M_contig88:443534..447602- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig88.20160.1 ID=mRNA_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=mRNA|length=4069bp|location=Sequence derived from alignment at F-serratus_M_contig88:443534..447602- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig88:443534..447602- >mRNA_F-serratus_M_contig88.20160.1 ID=mRNA_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig88:443534..447602- (Fucus serratus male)back to top |