mRNA_F-serratus_M_contig88.20149.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20149.1
Unique NamemRNA_F-serratus_M_contig88.20149.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig88.20149.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.650e-5
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  148 RLLELDACPNLISLDVSSNALTELDEATGLSKXXXXXXXXXXXXSLEAVGGLRSFMALGHL 330
            RL+ LDACP++ SLDVS NALTELD A  L +             LE++GGL   MALG+L
Sbjct:    3 RLVGLDACPSVTSLDVSWNALTELDSAC-LEECKELWIVDASHNRLESLGGLSRVMALGYL 62
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BLAST of mRNA_F-serratus_M_contig88.20149.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.730e-5
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  148 RLLELDACPNLISLDVSSNALTELDEATGLSKXXXXXXXXXXXXSLEAVGGLRSFMALGHL 330
            RL+ LDACP + SLDVS NALTELD A  L               LE++GGL   MALG+L
Sbjct:    3 RLVGLDACPGVTSLDVSWNALTELDSAC-LEGCKELWIVDASHNRLESLGGLSRVMALGYL 62
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNU7_ECTSI1.650e-550.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5J9X4_9PHAE5.730e-550.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:243971..244690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932561.9649377-CDS-F-serratus_M_contig88:243972..2440171622932561.9649377-CDS-F-serratus_M_contig88:243972..244017Fucus serratus maleCDSF-serratus_M_contig88 243973..244017 -
1690964366.8282986-CDS-F-serratus_M_contig88:243972..2440171690964366.8282986-CDS-F-serratus_M_contig88:243972..244017Fucus serratus maleCDSF-serratus_M_contig88 243973..244017 -
1622932561.9793475-CDS-F-serratus_M_contig88:244405..2446901622932561.9793475-CDS-F-serratus_M_contig88:244405..244690Fucus serratus maleCDSF-serratus_M_contig88 244406..244690 -
1690964366.8406467-CDS-F-serratus_M_contig88:244405..2446901690964366.8406467-CDS-F-serratus_M_contig88:244405..244690Fucus serratus maleCDSF-serratus_M_contig88 244406..244690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20149.1prot_F-serratus_M_contig88.20149.1Fucus serratus malepolypeptideF-serratus_M_contig88 243973..244690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20149.1

>prot_F-serratus_M_contig88.20149.1 ID=prot_F-serratus_M_contig88.20149.1|Name=mRNA_F-serratus_M_contig88.20149.1|organism=Fucus serratus male|type=polypeptide|length=110bp
ILYSATRTPIDRLVKVMGVTIIRPGILRHLCKEPLGEVESVRLRGRGILR
LLELDACPNLISLDVSSNALTELDEATGLSKCRNLWMLDASNNSLEAVGG
LRSFMALGHL
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mRNA from alignment at F-serratus_M_contig88:243971..244690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20149.1 ID=mRNA_F-serratus_M_contig88.20149.1|Name=mRNA_F-serratus_M_contig88.20149.1|organism=Fucus serratus male|type=mRNA|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig88:243971..244690- (Fucus serratus male)
ATACTATACTCAGCTACTCGTACTCCTATTGACAGACTAGTCAAGGTGAT
GGGCGTAACCATAATCCGTCCCGGTATCCTTCGACACCTGTGTAAGGAGC
CGCTAGGCGAGGTGGAGTCTGTCCGGCTGCGAGGGCGGGGCATCTTGCGG
CTACTTGAACTAGACGCGTGCCCGAACCTAATCTCCTTGGACGTGTCGAG
CAACGCGCTGACGGAGCTTGACGAGGCGACGGGCCTGTCGAAGTGCCGGA
ATCTTTGGATGCTAGATGCCTCAAACAACAGCCTCGTGGGGTTTCTTTTC
CCTATTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCTGTCCGCGTT
GGTAGTGTTCTGTGTGTGGACAACGAAGACGATTCAATTGAATCTATTAA
TAGATTACTGTACTGTACATCCCTCGTGACAGCAGGTACAAGTACAGTAC
GCGCCCGGGAGTCCGATCTCAAGTCCGTACGTCCGTACGTTCCGTTTGGT
GTTTTCCTCCGCTCTATTTTTCTCGACCATCATGTCATGTGCATGCCGTC
GATTTCATTACCGCTATCATCTCCCCTGAACGAGTACAATTACGTTTCAT
AGGGATTGAAAAAAATACGCACTTACCTCGCACACCGTTCACATAAACGA
TGTCGCAACACACCTCTTCTCAGGAGGCCGTTGGTGGATTGCGCTCGTTC
ATGGCCTTGGGGCACCTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:243971..244690-

>mRNA_F-serratus_M_contig88.20149.1 ID=mRNA_F-serratus_M_contig88.20149.1|Name=mRNA_F-serratus_M_contig88.20149.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig88:243971..244690- (Fucus serratus male)
ATACTATACTCAGCTACTCGTACTCCTATTGACAGACTAGTCAAGGTGAT
GGGCGTAACCATAATCCGTCCCGGTATCCTTCGACACCTGTGTAAGGAGC
CGCTAGGCGAGGTGGAGTCTGTCCGGCTGCGAGGGCGGGGCATCTTGCGG
CTACTTGAACTAGACGCGTGCCCGAACCTAATCTCCTTGGACGTGTCGAG
CAACGCGCTGACGGAGCTTGACGAGGCGACGGGCCTGTCGAAGTGCCGGA
ATCTTTGGATGCTAGATGCCTCAAACAACAGCCTCATACTATACTCAGCT
ACTCGTACTCCTATTGACAGACTAGTCAAGGTGATGGGCGTAACCATAAT
CCGTCCCGGTATCCTTCGACACCTGTGTAAGGAGCCGCTAGGCGAGGTGG
AGTCTGTCCGGCTGCGAGGGCGGGGCATCTTGCGGCTACTTGAACTAGAC
GCGTGCCCGAACCTAATCTCCTTGGACGTGTCGAGCAACGCGCTGACGGA
GCTTGACGAGGCGACGGGCCTGTCGAAGTGCCGGAATCTTTGGATGCTAG
ATGCCTCAAACAACAGCCTCGAGGCCGTTGGTGGATTGCGCTCGTTCATG
GCCTTGGGGCACCTCGAGGCCGTTGGTGGATTGCGCTCGTTCATGGCCTT
GGGGCACCTC
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